mRNA_M-pyrifera_M_contig83570.19521.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83570.19521.1
Unique NamemRNA_M-pyrifera_M_contig83570.19521.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig83570.19521.1 vs. uniprot
Match: A0A8B9F7S0_9PSIT (Pre-mRNA processing factor 40 homolog A n=1 Tax=Amazona collaria TaxID=241587 RepID=A0A8B9F7S0_9PSIT)

HSP 1 Score: 63.2 bits (152), Expect = 8.340e-10
Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    7 PGVQSAGTWTEAKGADGKVYYYNVVTQETTYERPDALKGPAERGVGGCP 153
            PG Q + TWTE K  DG+ YYYN  T+++T+E+PD LK PAE+ +  CP
Sbjct:  209 PGTQKSSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCP 257
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BLAST of mRNA_M-pyrifera_M_contig83570.19521.1 vs. uniprot
Match: A0A397TWH2_9GLOM (Uncharacterized protein (Fragment) n=1 Tax=Gigaspora rosea TaxID=44941 RepID=A0A397TWH2_9GLOM)

HSP 1 Score: 54.7 bits (130), Expect = 3.230e-8
Identity = 20/41 (48.78%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:   31 WTEAKGADGKVYYYNVVTQETTYERPDALKGPAERGVGGCP 153
            WTE    DG+ YYYN VT+++++++P+ LK P ER +G CP
Sbjct:    2 WTEHTAPDGRTYYYNTVTKQSSWDKPEELKTPEERALGSCP 42
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BLAST of mRNA_M-pyrifera_M_contig83570.19521.1 vs. uniprot
Match: A0A8C9TC29_SCLFO (Pre-mRNA processing factor 40 homolog A n=1 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9TC29_SCLFO)

HSP 1 Score: 58.5 bits (140), Expect = 3.480e-8
Identity = 27/52 (51.92%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:    7 PGVQSAGT---WTEAKGADGKVYYYNVVTQETTYERPDALKGPAERGVGGCP 153
            PGV    T   WTE K  DGK YYYN  T+++T+E+PD LK PAE+ +  CP
Sbjct:    5 PGVSPVDTKSVWTEHKSVDGKTYYYNTETKQSTWEKPDDLKSPAEQLLSKCP 56
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BLAST of mRNA_M-pyrifera_M_contig83570.19521.1 vs. uniprot
Match: A0A672UZN9_STRHB (Pre-mRNA processing factor 40 homolog A n=5 Tax=Strigops habroptila TaxID=2489341 RepID=A0A672UZN9_STRHB)

HSP 1 Score: 58.5 bits (140), Expect = 3.530e-8
Identity = 27/54 (50.00%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:    7 PGV-----QSAGTWTEAKGADGKVYYYNVVTQETTYERPDALKGPAERGVGGCP 153
            PGV     Q + TWTE K  DG+ YYYN  T+++T+E+PD LK PAE+ +  CP
Sbjct:  167 PGVNSMDAQKSSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCP 220
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BLAST of mRNA_M-pyrifera_M_contig83570.19521.1 vs. uniprot
Match: A0A3B1IJR3_ASTMX (Uncharacterized protein n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A3B1IJR3_ASTMX)

HSP 1 Score: 57.0 bits (136), Expect = 3.730e-8
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:   31 WTEAKGADGKVYYYNVVTQETTYERPDALKGPAERGVGGCP 153
            WTE K  DGK YYYN  T+++T+E+PD LK PAE+ +  CP
Sbjct:   80 WTEHKSLDGKTYYYNTETKQSTWEKPDELKSPAEQMLSKCP 120
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BLAST of mRNA_M-pyrifera_M_contig83570.19521.1 vs. uniprot
Match: A0A674PLR8_TAKRU (Uncharacterized protein n=1 Tax=Takifugu rubripes TaxID=31033 RepID=A0A674PLR8_TAKRU)

HSP 1 Score: 58.2 bits (139), Expect = 4.780e-8
Identity = 28/54 (51.85%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:    1 SAPGVQSAG---TWTEAKGADGKVYYYNVVTQETTYERPDALKGPAERGVGGCP 153
            SA  VQ  G    WTE K  DGK YYYN  T+++T+E+PD LK PAE+ +  CP
Sbjct:   78 SAASVQPTGPKSVWTEHKSMDGKTYYYNTETKQSTWEKPDDLKSPAEQMLSKCP 131
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BLAST of mRNA_M-pyrifera_M_contig83570.19521.1 vs. uniprot
Match: A0A672UZU4_STRHB (Pre-mRNA processing factor 40 homolog A n=1 Tax=Strigops habroptila TaxID=2489341 RepID=A0A672UZU4_STRHB)

HSP 1 Score: 58.2 bits (139), Expect = 4.810e-8
Identity = 24/46 (52.17%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:   16 QSAGTWTEAKGADGKVYYYNVVTQETTYERPDALKGPAERGVGGCP 153
            Q + TWTE K  DG+ YYYN  T+++T+E+PD LK PAE+ +  CP
Sbjct:  137 QKSSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCP 182
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BLAST of mRNA_M-pyrifera_M_contig83570.19521.1 vs. uniprot
Match: A0A672UYK0_STRHB (Pre-mRNA processing factor 40 homolog A n=11 Tax=Psittaciformes TaxID=9223 RepID=A0A672UYK0_STRHB)

HSP 1 Score: 58.2 bits (139), Expect = 4.820e-8
Identity = 24/46 (52.17%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:   16 QSAGTWTEAKGADGKVYYYNVVTQETTYERPDALKGPAERGVGGCP 153
            Q + TWTE K  DG+ YYYN  T+++T+E+PD LK PAE+ +  CP
Sbjct:  238 QKSSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCP 283
[Close]
BLAST of mRNA_M-pyrifera_M_contig83570.19521.1 vs. uniprot
Match: A0A7L0M7T3_9PSIT (PR40A factor (Fragment) n=1 Tax=Amazona guildingii TaxID=175529 RepID=A0A7L0M7T3_9PSIT)

HSP 1 Score: 58.2 bits (139), Expect = 4.820e-8
Identity = 24/46 (52.17%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:   16 QSAGTWTEAKGADGKVYYYNVVTQETTYERPDALKGPAERGVGGCP 153
            Q + TWTE K  DG+ YYYN  T+++T+E+PD LK PAE+ +  CP
Sbjct:  118 QKSSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCP 163
[Close]
BLAST of mRNA_M-pyrifera_M_contig83570.19521.1 vs. uniprot
Match: A0A8B9F1L5_9PSIT (Pre-mRNA processing factor 40 homolog A n=1 Tax=Amazona collaria TaxID=241587 RepID=A0A8B9F1L5_9PSIT)

HSP 1 Score: 58.2 bits (139), Expect = 4.840e-8
Identity = 24/46 (52.17%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:   16 QSAGTWTEAKGADGKVYYYNVVTQETTYERPDALKGPAERGVGGCP 153
            Q + TWTE K  DG+ YYYN  T+++T+E+PD LK PAE+ +  CP
Sbjct:  238 QKSSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCP 283
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83570.19521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8B9F7S0_9PSIT8.340e-1053.06Pre-mRNA processing factor 40 homolog A n=1 Tax=Am... [more]
A0A397TWH2_9GLOM3.230e-848.78Uncharacterized protein (Fragment) n=1 Tax=Gigaspo... [more]
A0A8C9TC29_SCLFO3.480e-851.92Pre-mRNA processing factor 40 homolog A n=1 Tax=Sc... [more]
A0A672UZN9_STRHB3.530e-850.00Pre-mRNA processing factor 40 homolog A n=5 Tax=St... [more]
A0A3B1IJR3_ASTMX3.730e-856.10Uncharacterized protein n=1 Tax=Astyanax mexicanus... [more]
A0A674PLR8_TAKRU4.780e-851.85Uncharacterized protein n=1 Tax=Takifugu rubripes ... [more]
A0A672UZU4_STRHB4.810e-852.17Pre-mRNA processing factor 40 homolog A n=1 Tax=St... [more]
A0A672UYK0_STRHB4.820e-852.17Pre-mRNA processing factor 40 homolog A n=11 Tax=P... [more]
A0A7L0M7T3_9PSIT4.820e-852.17PR40A factor (Fragment) n=1 Tax=Amazona guildingii... [more]
A0A8B9F1L5_9PSIT4.840e-852.17Pre-mRNA processing factor 40 homolog A n=1 Tax=Am... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83570contigM-pyrifera_M_contig83570:46..282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size237
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816743.2226472-CDS-M-pyrifera_M_contig83570:45..2821622816743.2226472-CDS-M-pyrifera_M_contig83570:45..282Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83570 46..282 +
1692278151.9295006-CDS-M-pyrifera_M_contig83570:45..2821692278151.9295006-CDS-M-pyrifera_M_contig83570:45..282Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83570 46..282 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83570.19521.1prot_M-pyrifera_M_contig83570.19521.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83570 46..282 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83570.19521.1

>prot_M-pyrifera_M_contig83570.19521.1 ID=prot_M-pyrifera_M_contig83570.19521.1|Name=mRNA_M-pyrifera_M_contig83570.19521.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=79bp
SAPGVQSAGTWTEAKGADGKVYYYNVVTQETTYERPDALKGPAERGVGGC
PWLEHAGDGGKVYYHNKTTGATVWEEPEE
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mRNA from alignment at M-pyrifera_M_contig83570:46..282+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83570.19521.1 ID=mRNA_M-pyrifera_M_contig83570.19521.1|Name=mRNA_M-pyrifera_M_contig83570.19521.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=237bp|location=Sequence derived from alignment at M-pyrifera_M_contig83570:46..282+ (Macrocystis pyrifera P11B4 male)
TCGGCTCCAGGTGTCCAGAGTGCTGGGACATGGACGGAGGCAAAAGGTGC
GGATGGAAAAGTGTATTATTACAATGTTGTGACGCAAGAAACTACATATG
AGCGTCCAGATGCCTTGAAAGGCCCTGCAGAACGTGGTGTTGGTGGATGT
CCGTGGCTGGAACACGCAGGAGATGGTGGAAAGGTGTATTATCACAACAA
AACCACTGGAGCTACAGTGTGGGAAGAGCCAGAGGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83570:46..282+

>mRNA_M-pyrifera_M_contig83570.19521.1 ID=mRNA_M-pyrifera_M_contig83570.19521.1|Name=mRNA_M-pyrifera_M_contig83570.19521.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig83570:46..282+ (Macrocystis pyrifera P11B4 male)
TCGGCTCCAGGTGTCCAGAGTGCTGGGACATGGACGGAGGCAAAAGGTGC
GGATGGAAAAGTGTATTATTACAATGTTGTGACGCAAGAAACTACATATG
AGCGTCCAGATGCCTTGAAAGGCCCTGCAGAACGTGGTGTTGGTGGATGT
CCGTGGCTGGAACACGCAGGAGATGGTGGAAAGGTGTATTATCACAACAA
AACCACTGGAGCTACAGTGTGGGAAGAGCCAGAGGAGTCGGCTCCAGGTG
TCCAGAGTGCTGGGACATGGACGGAGGCAAAAGGTGCGGATGGAAAAGTG
TATTATTACAATGTTGTGACGCAAGAAACTACATATGAGCGTCCAGATGC
CTTGAAAGGCCCTGCAGAACGTGGTGTTGGTGGATGTCCGTGGCTGGAAC
ACGCAGGAGATGGTGGAAAGGTGTATTATCACAACAAAACCACTGGAGCT
ACAGTGTGGGAAGAGCCAGAGGAG
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