prot_M-pyrifera_M_contig83570.19521.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig83570.19521.1
Unique Nameprot_M-pyrifera_M_contig83570.19521.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length79
Homology
BLAST of mRNA_M-pyrifera_M_contig83570.19521.1 vs. uniprot
Match: A0A8B9F7S0_9PSIT (Pre-mRNA processing factor 40 homolog A n=1 Tax=Amazona collaria TaxID=241587 RepID=A0A8B9F7S0_9PSIT)

HSP 1 Score: 63.2 bits (152), Expect = 8.340e-10
Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 0
Query:    3 PGVQSAGTWTEAKGADGKVYYYNVVTQETTYERPDALKGPAERGVGGCP 51
            PG Q + TWTE K  DG+ YYYN  T+++T+E+PD LK PAE+ +  CP
Sbjct:  209 PGTQKSSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCP 257          
BLAST of mRNA_M-pyrifera_M_contig83570.19521.1 vs. uniprot
Match: A0A397TWH2_9GLOM (Uncharacterized protein (Fragment) n=1 Tax=Gigaspora rosea TaxID=44941 RepID=A0A397TWH2_9GLOM)

HSP 1 Score: 54.7 bits (130), Expect = 3.230e-8
Identity = 20/41 (48.78%), Postives = 30/41 (73.17%), Query Frame = 0
Query:   11 WTEAKGADGKVYYYNVVTQETTYERPDALKGPAERGVGGCP 51
            WTE    DG+ YYYN VT+++++++P+ LK P ER +G CP
Sbjct:    2 WTEHTAPDGRTYYYNTVTKQSSWDKPEELKTPEERALGSCP 42          
BLAST of mRNA_M-pyrifera_M_contig83570.19521.1 vs. uniprot
Match: A0A8C9TC29_SCLFO (Pre-mRNA processing factor 40 homolog A n=1 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9TC29_SCLFO)

HSP 1 Score: 58.5 bits (140), Expect = 3.480e-8
Identity = 27/52 (51.92%), Postives = 34/52 (65.38%), Query Frame = 0
Query:    3 PGVQSAGT---WTEAKGADGKVYYYNVVTQETTYERPDALKGPAERGVGGCP 51
            PGV    T   WTE K  DGK YYYN  T+++T+E+PD LK PAE+ +  CP
Sbjct:    5 PGVSPVDTKSVWTEHKSVDGKTYYYNTETKQSTWEKPDDLKSPAEQLLSKCP 56          
BLAST of mRNA_M-pyrifera_M_contig83570.19521.1 vs. uniprot
Match: A0A672UZN9_STRHB (Pre-mRNA processing factor 40 homolog A n=5 Tax=Strigops habroptila TaxID=2489341 RepID=A0A672UZN9_STRHB)

HSP 1 Score: 58.5 bits (140), Expect = 3.530e-8
Identity = 27/54 (50.00%), Postives = 36/54 (66.67%), Query Frame = 0
Query:    3 PGV-----QSAGTWTEAKGADGKVYYYNVVTQETTYERPDALKGPAERGVGGCP 51
            PGV     Q + TWTE K  DG+ YYYN  T+++T+E+PD LK PAE+ +  CP
Sbjct:  167 PGVNSMDAQKSSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCP 220          
BLAST of mRNA_M-pyrifera_M_contig83570.19521.1 vs. uniprot
Match: A0A3B1IJR3_ASTMX (Uncharacterized protein n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A3B1IJR3_ASTMX)

HSP 1 Score: 57.0 bits (136), Expect = 3.730e-8
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 0
Query:   11 WTEAKGADGKVYYYNVVTQETTYERPDALKGPAERGVGGCP 51
            WTE K  DGK YYYN  T+++T+E+PD LK PAE+ +  CP
Sbjct:   80 WTEHKSLDGKTYYYNTETKQSTWEKPDELKSPAEQMLSKCP 120          
BLAST of mRNA_M-pyrifera_M_contig83570.19521.1 vs. uniprot
Match: A0A674PLR8_TAKRU (Uncharacterized protein n=1 Tax=Takifugu rubripes TaxID=31033 RepID=A0A674PLR8_TAKRU)

HSP 1 Score: 58.2 bits (139), Expect = 4.780e-8
Identity = 28/54 (51.85%), Postives = 35/54 (64.81%), Query Frame = 0
Query:    1 SAPGVQSAG---TWTEAKGADGKVYYYNVVTQETTYERPDALKGPAERGVGGCP 51
            SA  VQ  G    WTE K  DGK YYYN  T+++T+E+PD LK PAE+ +  CP
Sbjct:   78 SAASVQPTGPKSVWTEHKSMDGKTYYYNTETKQSTWEKPDDLKSPAEQMLSKCP 131          
BLAST of mRNA_M-pyrifera_M_contig83570.19521.1 vs. uniprot
Match: A0A672UZU4_STRHB (Pre-mRNA processing factor 40 homolog A n=1 Tax=Strigops habroptila TaxID=2489341 RepID=A0A672UZU4_STRHB)

HSP 1 Score: 58.2 bits (139), Expect = 4.810e-8
Identity = 24/46 (52.17%), Postives = 33/46 (71.74%), Query Frame = 0
Query:    6 QSAGTWTEAKGADGKVYYYNVVTQETTYERPDALKGPAERGVGGCP 51
            Q + TWTE K  DG+ YYYN  T+++T+E+PD LK PAE+ +  CP
Sbjct:  137 QKSSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCP 182          
BLAST of mRNA_M-pyrifera_M_contig83570.19521.1 vs. uniprot
Match: A0A672UYK0_STRHB (Pre-mRNA processing factor 40 homolog A n=11 Tax=Psittaciformes TaxID=9223 RepID=A0A672UYK0_STRHB)

HSP 1 Score: 58.2 bits (139), Expect = 4.820e-8
Identity = 24/46 (52.17%), Postives = 33/46 (71.74%), Query Frame = 0
Query:    6 QSAGTWTEAKGADGKVYYYNVVTQETTYERPDALKGPAERGVGGCP 51
            Q + TWTE K  DG+ YYYN  T+++T+E+PD LK PAE+ +  CP
Sbjct:  238 QKSSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCP 283          
BLAST of mRNA_M-pyrifera_M_contig83570.19521.1 vs. uniprot
Match: A0A7L0M7T3_9PSIT (PR40A factor (Fragment) n=1 Tax=Amazona guildingii TaxID=175529 RepID=A0A7L0M7T3_9PSIT)

HSP 1 Score: 58.2 bits (139), Expect = 4.820e-8
Identity = 24/46 (52.17%), Postives = 33/46 (71.74%), Query Frame = 0
Query:    6 QSAGTWTEAKGADGKVYYYNVVTQETTYERPDALKGPAERGVGGCP 51
            Q + TWTE K  DG+ YYYN  T+++T+E+PD LK PAE+ +  CP
Sbjct:  118 QKSSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCP 163          
BLAST of mRNA_M-pyrifera_M_contig83570.19521.1 vs. uniprot
Match: A0A8B9F1L5_9PSIT (Pre-mRNA processing factor 40 homolog A n=1 Tax=Amazona collaria TaxID=241587 RepID=A0A8B9F1L5_9PSIT)

HSP 1 Score: 58.2 bits (139), Expect = 4.840e-8
Identity = 24/46 (52.17%), Postives = 33/46 (71.74%), Query Frame = 0
Query:    6 QSAGTWTEAKGADGKVYYYNVVTQETTYERPDALKGPAERGVGGCP 51
            Q + TWTE K  DG+ YYYN  T+++T+E+PD LK PAE+ +  CP
Sbjct:  238 QKSSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCP 283          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83570.19521.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8B9F7S0_9PSIT8.340e-1053.06Pre-mRNA processing factor 40 homolog A n=1 Tax=Am... [more]
A0A397TWH2_9GLOM3.230e-848.78Uncharacterized protein (Fragment) n=1 Tax=Gigaspo... [more]
A0A8C9TC29_SCLFO3.480e-851.92Pre-mRNA processing factor 40 homolog A n=1 Tax=Sc... [more]
A0A672UZN9_STRHB3.530e-850.00Pre-mRNA processing factor 40 homolog A n=5 Tax=St... [more]
A0A3B1IJR3_ASTMX3.730e-856.10Uncharacterized protein n=1 Tax=Astyanax mexicanus... [more]
A0A674PLR8_TAKRU4.780e-851.85Uncharacterized protein n=1 Tax=Takifugu rubripes ... [more]
A0A672UZU4_STRHB4.810e-852.17Pre-mRNA processing factor 40 homolog A n=1 Tax=St... [more]
A0A672UYK0_STRHB4.820e-852.17Pre-mRNA processing factor 40 homolog A n=11 Tax=P... [more]
A0A7L0M7T3_9PSIT4.820e-852.17PR40A factor (Fragment) n=1 Tax=Amazona guildingii... [more]
A0A8B9F1L5_9PSIT4.840e-852.17Pre-mRNA processing factor 40 homolog A n=1 Tax=Am... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001202WW domainSMARTSM00456ww_5coord: 6..38
e-value: 5.2E-7
score: 39.3
coord: 47..79
e-value: 0.0023
score: 27.2
IPR001202WW domainPFAMPF00397WWcoord: 51..77
e-value: 4.5E-7
score: 29.8
coord: 11..36
e-value: 4.6E-8
score: 33.0
IPR001202WW domainPROSITEPS01159WW_DOMAIN_1coord: 11..36
IPR001202WW domainPROSITEPS50020WW_DOMAIN_2coord: 51..79
score: 10.719
IPR001202WW domainPROSITEPS50020WW_DOMAIN_2coord: 11..38
score: 10.955
NoneNo IPR availableGENE3D2.20.70.10coord: 48..79
e-value: 5.3E-10
score: 40.4
coord: 4..46
e-value: 3.8E-14
score: 53.7
NoneNo IPR availablePANTHERPTHR11864:SF0PRP40 PRE-MRNA PROCESSING FACTOR 40 HOMOLOG A (YEAST)coord: 6..79
IPR039726Pre-mRNA-processing factor Prp40PANTHERPTHR11864PRE-MRNA-PROCESSING PROTEIN PRP40coord: 6..79
IPR036020WW domain superfamilySUPERFAMILY51045WW domaincoord: 10..43
IPR036020WW domain superfamilySUPERFAMILY51045WW domaincoord: 51..79

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83570contigM-pyrifera_M_contig83570:46..282 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83570.19521.1mRNA_M-pyrifera_M_contig83570.19521.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig83570 46..282 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig83570.19521.1 ID=prot_M-pyrifera_M_contig83570.19521.1|Name=mRNA_M-pyrifera_M_contig83570.19521.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=79bp
SAPGVQSAGTWTEAKGADGKVYYYNVVTQETTYERPDALKGPAERGVGGC
PWLEHAGDGGKVYYHNKTTGATVWEEPEE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001202WW_dom
IPR039726Prp40-like
IPR036020WW_dom_sf