mRNA_M-pyrifera_M_contig8322.19435.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8322.19435.1
Unique NamemRNA_M-pyrifera_M_contig8322.19435.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig8322.19435.1 vs. uniprot
Match: D8LER4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LER4_ECTSI)

HSP 1 Score: 332 bits (852), Expect = 5.090e-114
Identity = 170/208 (81.73%), Postives = 177/208 (85.10%), Query Frame = 1
Query:    1 VLAAAHAEPANALSFPTWMVHVSSLIEWLAAMTYVWRFADVSGLNEWKGLTWGMLPLHTSGLIACTYHIFYNSPELISLVAMQAGLTCFGNATMAFATWRVWQAGKQAWKGDEVEEAEAAAEAAAVASADGETSSSPLSGSDASFYAQILGITVVGAGLVKWGELLVDFPFEPSYVAAAALILGPTALNAKKWADRSADPSAPIKGII 624
            +LAAAH EP NALSFPTWMVHVSSLIEWLAAMTYVWRFADVSGL EWKGLTWGMLPLHTSGLIACTYHIFYN+PELISLVAMQAGLTCFGNATMAFATWRVWQAGKQ W+GDEVEEA             GE SSS   G D  FY Q+L ITVVGA LVKWGEL +DFPF+PSY AAAALILGPTALNAKKWADRS DPSA I+GII
Sbjct:    2 MLAAAHTEPGNALSFPTWMVHVSSLIEWLAAMTYVWRFADVSGLKEWKGLTWGMLPLHTSGLIACTYHIFYNAPELISLVAMQAGLTCFGNATMAFATWRVWQAGKQEWRGDEVEEAXXXXXXXXXXXX-GEASSSL--GDDVPFYGQVLAITVVGAALVKWGELYLDFPFQPSYAAAAALILGPTALNAKKWADRSKDPSAAIEGII 206          
BLAST of mRNA_M-pyrifera_M_contig8322.19435.1 vs. uniprot
Match: A0A6H5KGT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGT7_9PHAE)

HSP 1 Score: 337 bits (863), Expect = 7.310e-112
Identity = 171/206 (83.01%), Postives = 176/206 (85.44%), Query Frame = 1
Query:    7 AAAHAEPANALSFPTWMVHVSSLIEWLAAMTYVWRFADVSGLNEWKGLTWGMLPLHTSGLIACTYHIFYNSPELISLVAMQAGLTCFGNATMAFATWRVWQAGKQAWKGDEVEEAEAAAEAAAVASADGETSSSPLSGSDASFYAQILGITVVGAGLVKWGELLVDFPFEPSYVAAAALILGPTALNAKKWADRSADPSAPIKGII 624
            AAAHAEP NALSFPTWMVHVSSLIEWLAAMTYVWRFADVSGL EWKGLTWGMLPLHTSGLIACTYHIFYN+PELISLVAMQAGLTCFGNATMAFATWRVWQAGKQ W+GDEVEEAE            GE SSS     D  FY Q+L ITVVGA LVKWGEL +DFPFEPSY AAAALILGPTALNAKKWADRS DPSA I+GII
Sbjct:  269 AAAHAEPGNALSFPTWMVHVSSLIEWLAAMTYVWRFADVSGLKEWKGLTWGMLPLHTSGLIACTYHIFYNAPELISLVAMQAGLTCFGNATMAFATWRVWQAGKQEWRGDEVEEAEXXXXXXXXXXRKGEASSSLRD--DVPFYGQLLAITVVGAALVKWGELYLDFPFEPSYAAAAALILGPTALNAKKWADRSKDPSAAIEGII 472          
BLAST of mRNA_M-pyrifera_M_contig8322.19435.1 vs. uniprot
Match: A0A835YN17_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN17_9STRA)

HSP 1 Score: 268 bits (684), Expect = 2.260e-88
Identity = 132/208 (63.46%), Postives = 157/208 (75.48%), Query Frame = 1
Query:    1 VLAAAHAEPANALSFPTWMVHVSSLIEWLAAMTYVWRFADVSGLNEWKGLTWGMLPLHTSGLIACTYHIFYNSPELISLVAMQAGLTCFGNATMAFATWRVWQAGKQAWKGDEVEEAEAAAEAAAVASADGETSSSPLSGSDASFYAQILGITVVGAGLVKWGELLVDFPFEPSYVAAAALILGPTALNAKKWADRSADPSAPIKGII 624
            +L A H EPANALS+PTWMVHVSS+IEWL AM Y+WR+A VSGL +WKGLTWGMLPLHTSGL ACTYHI YNSP+++ LVA+QAGLTCFGNATMA AT+R+WQAGK    GD         +A    +AD      P   +DA+FY Q++ +TV+GA LVKWGELLVDFPFEPSY AAAALI GPTA+N  KW +RS  P + + G+ 
Sbjct:   21 MLVALHPEPANALSWPTWMVHVSSIIEWLVAMAYIWRYAAVSGLQQWKGLTWGMLPLHTSGLCACTYHILYNSPDVVGLVALQAGLTCFGNATMAAATYRIWQAGKA---GD--------LQAGESVTAD------PSEANDATFYGQLVAMTVIGAALVKWGELLVDFPFEPSYAAAAALIFGPTAVNVYKWYERSQKPDSAVTGLF 211          
BLAST of mRNA_M-pyrifera_M_contig8322.19435.1 vs. uniprot
Match: R7Q950_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q950_CHOCR)

HSP 1 Score: 189 bits (479), Expect = 4.750e-55
Identity = 95/207 (45.89%), Postives = 135/207 (65.22%), Query Frame = 1
Query:    4 LAAAHAEPANALSFPTWMVHVSSLIEWLAAMTYVWRFADVSGLNEWKGLTWGMLPLHTSGLIACTYHIFYNSPELISLVAMQAGLTCFGNATMAFATWRVWQAGKQAWKGDEVEEAEAAAEAAAVASADGETSSSPLSGSDASFYAQILGITVVGAGLVKWGELLVDFPFEPSYVAAAALILGPTALNAKKWADRSADPSAPIKGII 624
            L + H EPANALSFPTW++HVSSL+EWL AM  VW++A+V+    WKGLTWGMLPLHTSG+ ACTYH+FYN+P L  LVA+QA LT FGN T+  A +R+ ++ K+     +   +++     ++   + + +      S+A F  ++ GI+ VG+ LVKWG L +D PFEP+   + ++I+ PT LN  KWA RS    +   G +
Sbjct:  187 LGSLHVEPANALSFPTWVIHVSSLVEWLVAMGLVWKYAEVTDNPAWKGLTWGMLPLHTSGICACTYHLFYNAPSLNILVALQAALTFFGNGTLVAAAYRISRSEKKTMAAHKSVSSQSEKRNISLVGFE-DLAVQLQQDSNAKFLLKLFGISCVGSALVKWGSLAIDAPFEPTLALSLSIIVIPTVLNMAKWAVRSNKEMSDFGGFL 392          
BLAST of mRNA_M-pyrifera_M_contig8322.19435.1 vs. uniprot
Match: K8F0D0_9CHLO (Uncharacterized protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8F0D0_9CHLO)

HSP 1 Score: 189 bits (480), Expect = 6.180e-54
Identity = 97/210 (46.19%), Postives = 136/210 (64.76%), Query Frame = 1
Query:    1 VLAAAHAEPANALSFPTWMVHVSSLIEWLAAMTYVWRFADVSGLNEWKGLTWGMLPLHTSGLIACTYHIFYNSPELISLVAMQAGLTCFGNATMAFATWRVWQAGKQAW-KGDEVEEAEAAAEAAAVASADGETS-SSPLSGSDASFYAQILGITVVGAGLVKWGELLVDFPFEPSYVAAAALILGPTALNAKKWADRSADPSAPIKGII 624
            + +A H EP NALS PTW++H SSLIEWL AM+ +W +ADV     +KGLTWGM+  H SGL ACT+H+FYNSP L S+VA+QAGLTC GNATM  A +R++Q GK+     D+ ++A+A +  A   +    ++ +S L   DA    ++  ++ + + LVKWG L VDFPFEPS + A ++I+ PT LN   W   S DP+     ++
Sbjct:  317 IASAKHGEPGNALSLPTWVIHASSLIEWLVAMSLIWNYADVKKRPSYKGLTWGMVTSHASGLAACTFHVFYNSPALNSVVALQAGLTCIGNATMGIAAYRMYQEGKRLGISSDDADDADAVSVLAGTKALQTPSAGTSFLETDDAFLLLKLALVSTLVSALVKWGSLFVDFPFEPSVLLAYSMIVFPTILNMNAWKKLSDDPTKKADSLL 526          
BLAST of mRNA_M-pyrifera_M_contig8322.19435.1 vs. uniprot
Match: A0A2V3IH42_9FLOR (Ycf49-like protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IH42_9FLOR)

HSP 1 Score: 184 bits (467), Expect = 6.400e-54
Identity = 97/196 (49.49%), Postives = 128/196 (65.31%), Query Frame = 1
Query:    1 VLAAAHAEPANALSFPTWMVHVSSLIEWLAAMTYVWRFADVSGLNEWKGLTWGMLPLHTSGLIACTYHIFYNSPELISLVAMQAGLTCFGNATMAFATWRVWQAGKQAWKGDEVEEAEAAAEAAAVASADGETSSSPLSGSDASFYAQILGITVVGAGLVKWGELLVDFPFEPSYVAAAALILGPTALNAKKWADR 588
            +LA  H EPANALSFPTW++HVSSL+EWL AM  VW +++ S    WKGLTWGM+PLHTSG+ ACTYH+FYN+P L  LV +QA LT  GN +MAFAT R+   G ++  GD+ ++ +  AE++ +   D  TS +    S+     ++  ++ +G+  VKWG LL D PF  S   A  LI  PTALN  KWA R
Sbjct:  142 LLATVHEEPANALSFPTWIIHVSSLVEWLVAMGLVWEYSERSRNERWKGLTWGMVPLHTSGICACTYHLFYNAPSLSVLVLLQAALTFVGNCSMAFATCRIGGQGDES--GDDADDDKVEAESSLMGFEDMGTSKN----SNLMLLGKVFALSAMGSAGVKWGSLLFDAPFSGSLPLALTLITVPTALNVVKWASR 331          
BLAST of mRNA_M-pyrifera_M_contig8322.19435.1 vs. uniprot
Match: A0A7S4UM71_GUITH (Hypothetical protein n=3 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4UM71_GUITH)

HSP 1 Score: 184 bits (468), Expect = 4.010e-53
Identity = 95/192 (49.48%), Postives = 122/192 (63.54%), Query Frame = 1
Query:   16 HAEPANALSFPTWMVHVSSLIEWLAAMTYVWRFADVSGLNEWKGLTWGMLPLHTSGLIACTYHIFYNSPELISLVAMQAGLTCFGNATMAFATWRVWQAGKQAWKGDEVEEAEAAAEAAAVASADGETSSSPLSGSDASFYAQILGITVVGAGLVKWGELLVDFPFEPSYVAAAALILGPTALNAKKWADRS 591
            H EP+NALS PTWMVHVSSLIEWLAAM  VWR+A+V+G   WKGLTWGMLP H+SGL ACTYH+FYNSP +  LVA+Q+ LT  G+ T  +A +R+++  K        +  E  AE  A    DG    + L  S+  +  ++  + +  +  VKWGELLVDFPF+P+Y  A  +I  PT  N   W  RS
Sbjct:  228 HGEPSNALSLPTWMVHVSSLIEWLAAMGLVWRYAEVTGNPRWKGLTWGMLPFHSSGLCACTYHLFYNSPAVSGLVALQSALTVVGDFTCWYAAYRIYEYSKSG------QVKEVGAEGVAGERKDG----TALEDSEGEYLTKLFFLVLASSAAVKWGELLVDFPFDPNYTTALLIIFVPTLANIFTWFARS 409          
BLAST of mRNA_M-pyrifera_M_contig8322.19435.1 vs. uniprot
Match: A0A7S1GS18_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1GS18_HEMAN)

HSP 1 Score: 177 bits (449), Expect = 4.940e-50
Identity = 100/198 (50.51%), Postives = 124/198 (62.63%), Query Frame = 1
Query:   10 AAHAEPANALSFPTWMVHVSSLIEWLAAMTYVWRFADVSGLNEWKGLTWGMLPLHTSGLIACTYHIFYNSPELISLVAMQAGLTCFGNATMAFATWRVWQAGKQAWKGDEVEEAEAAAEAAAVASADGETSSSPLSGSDASFYAQILGITVVGAGLVKWGELLVDFPFEPSYVAAAALILGPTALNAKKWADRSADPS 603
            A H EPANALSFPTWMVH+SSLIEWLAAM  VWR+++VSG   WKGLTWGMLP H+SGL A TYH FYN+  +  LVA+Q  LT  G+ T  +AT+R++Q   +   G  V  A AA     +  A    +S  L  S+  +   + G+  V +  VKWGEL +D PFEPS  AAA ++ G TALN   W  RS   S
Sbjct:  248 ALHPEPANALSFPTWMVHISSLIEWLAAMGLVWRYSEVSGNPRWKGLTWGMLPFHSSGLCAVTYHFFYNAKAVEVLVAVQGALTVVGDLTCWYATYRIYQWACENPGG--VPLAPAAQSGGQLPPATRPRASGGLD-SEGKYLWSLFGLVAVLSAAVKWGELAIDLPFEPSVGAAAGIVGGLTALNVATWLQRSTSES 442          
BLAST of mRNA_M-pyrifera_M_contig8322.19435.1 vs. uniprot
Match: A0A0G4G427_VITBC (Uncharacterized protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4G427_VITBC)

HSP 1 Score: 172 bits (435), Expect = 2.310e-48
Identity = 103/234 (44.02%), Postives = 130/234 (55.56%), Query Frame = 1
Query:    1 VLAAAHAEPANALSFPTWMVHVSSLIEWLAAMTYVWRFADVSGLNEWKGLTWGMLPLHTSGLIACTYHIFYNSPELISLVAMQAGLTCFGNATMAFATWRVWQAGKQA-----------------WKGDEVEEAEAAAEAAAVA--SADGETSSSPLSG-----------SDASFYAQILGITVVGAGLVKWGELLVDFPFEPSYVAAAALILGPTALNAKKWADRSADPSAPI 612
            V + AH EP NALS PTW +HVSSL+EWL AM  +W++ADV     WKGLTWGMLPLH+SG+ ACTYH FYN+ +L  LV +QA LT  G+ T A A WR+WQ+ K                          +A    + A VA  S  G    SPL G           S+ SF  ++  I+V  +  VK+GEL +D PF PS   A A+I  PT LN+ KWA RS + SA +
Sbjct:  171 VFSDAHPEPWNALSLPTWAIHVSSLVEWLIAMGLIWQYADVRRNPAWKGLTWGMLPLHSSGICACTYHFFYNASQLDFLVGLQAFLTVVGDTTCALAAWRIWQSEKNLPTPATDTHPQXXXXXXXXXXXXXXQASRLPDGATVAQYSGGGAGGGSPLKGWEDLGELFGQDSNLSFGLKLAAISVAVSAAVKYGELYLDLPFSPSLTPALAIIGVPTLLNSVKWALRSRNSSADL 404          
BLAST of mRNA_M-pyrifera_M_contig8322.19435.1 vs. uniprot
Match: A0A061R910_9CHLO (Uncharacterized protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R910_9CHLO)

HSP 1 Score: 170 bits (431), Expect = 5.150e-48
Identity = 100/213 (46.95%), Postives = 126/213 (59.15%), Query Frame = 1
Query:   16 HAEPANALSFPTWMVHVSSLIEWLAAMTYVWRFADVSGLNEWKGLTWGMLPLHTSGLIACTYHIFYNSPELISLVAMQAGLTCFGNATMAFATWRVWQAGKQAWKGDEVEEAEAAAEAAAVASADGETSSSPL--------------------SGSDASFYAQILGITVVGAGLVKWGELLVDFPF-EPSYVAAAALILGPTALNAKKWADRS 591
            HAEP+NALS PTW VH SS+IE+L AM  VW++A+VSG   WKGLTWGMLP H+ GL ACTYH+F+NSP L S+VA+QA LT  GN T A A +R+WQ G Q            +AE  A +SA   +S SP                     S SDA F A+I G +++ A ++K+GEL + FPF E   + A   I  P+ LN  KWA  S
Sbjct:  170 HAEPSNALSLPTWAVHTSSVIEYLVAMGLVWQYAEVSGNPRWKGLTWGMLPSHSGGLCACTYHLFFNSPALSSIVALQALLTTVGNTTCAIAAYRLWQYGSQR-----------SAEERATSSAGNGSSPSPTDASHAGTGQRGWEDLAEEYKSDSDAVFVAKIAGWSILLAAVIKYGELGLGFPFSEQPLLPALGCIAVPSLLNISKWASLS 371          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8322.19435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LER4_ECTSI5.090e-11481.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGT7_9PHAE7.310e-11283.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YN17_9STRA2.260e-8863.46Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
R7Q950_CHOCR4.750e-5545.89Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
K8F0D0_9CHLO6.180e-5446.19Uncharacterized protein n=1 Tax=Bathycoccus prasin... [more]
A0A2V3IH42_9FLOR6.400e-5449.49Ycf49-like protein n=1 Tax=Gracilariopsis chorda T... [more]
A0A7S4UM71_GUITH4.010e-5349.48Hypothetical protein n=3 Tax=Guillardia theta TaxI... [more]
A0A7S1GS18_HEMAN4.940e-5050.51Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A0G4G427_VITBC2.310e-4844.02Uncharacterized protein n=3 Tax=Vitrella brassicaf... [more]
A0A061R910_9CHLO5.150e-4846.95Uncharacterized protein n=1 Tax=Tetraselmis sp. GS... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8322contigM-pyrifera_M_contig8322:8381..11895 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score338.2
Seed ortholog evalue2.8e-90
Seed eggNOG ortholog2880.D8LER4
KEGG koko:K03453
KEGG TC2.A.28
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF2499)
EggNOG OGs2ANPI@1,2RZEV@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons4
Model size627
Cds size627
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8322.19435.1prot_M-pyrifera_M_contig8322.19435.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8322 8381..11895 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816738.970249-CDS-M-pyrifera_M_contig8322:8380..86151622816738.970249-CDS-M-pyrifera_M_contig8322:8380..8615Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8322 8381..8615 -
1692278149.5783298-CDS-M-pyrifera_M_contig8322:8380..86151692278149.5783298-CDS-M-pyrifera_M_contig8322:8380..8615Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8322 8381..8615 -
1622816738.9829538-CDS-M-pyrifera_M_contig8322:10212..103551622816738.9829538-CDS-M-pyrifera_M_contig8322:10212..10355Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8322 10213..10355 -
1692278149.604729-CDS-M-pyrifera_M_contig8322:10212..103551692278149.604729-CDS-M-pyrifera_M_contig8322:10212..10355Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8322 10213..10355 -
1622816738.9994338-CDS-M-pyrifera_M_contig8322:11343..114821622816738.9994338-CDS-M-pyrifera_M_contig8322:11343..11482Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8322 11344..11482 -
1692278149.6146064-CDS-M-pyrifera_M_contig8322:11343..114821692278149.6146064-CDS-M-pyrifera_M_contig8322:11343..11482Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8322 11344..11482 -
1622816739.011171-CDS-M-pyrifera_M_contig8322:11785..118951622816739.011171-CDS-M-pyrifera_M_contig8322:11785..11895Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8322 11786..11895 -
1692278149.624153-CDS-M-pyrifera_M_contig8322:11785..118951692278149.624153-CDS-M-pyrifera_M_contig8322:11785..11895Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8322 11786..11895 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8322.19435.1

>prot_M-pyrifera_M_contig8322.19435.1 ID=prot_M-pyrifera_M_contig8322.19435.1|Name=mRNA_M-pyrifera_M_contig8322.19435.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=209bp
VLAAAHAEPANALSFPTWMVHVSSLIEWLAAMTYVWRFADVSGLNEWKGL
TWGMLPLHTSGLIACTYHIFYNSPELISLVAMQAGLTCFGNATMAFATWR
VWQAGKQAWKGDEVEEAEAAAEAAAVASADGETSSSPLSGSDASFYAQIL
GITVVGAGLVKWGELLVDFPFEPSYVAAAALILGPTALNAKKWADRSADP
SAPIKGII*
back to top

mRNA from alignment at M-pyrifera_M_contig8322:8381..11895-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8322.19435.1 ID=mRNA_M-pyrifera_M_contig8322.19435.1|Name=mRNA_M-pyrifera_M_contig8322.19435.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3515bp|location=Sequence derived from alignment at M-pyrifera_M_contig8322:8381..11895- (Macrocystis pyrifera P11B4 male)
GTACTCGCAGCGGCGCACGCGGAACCAGCCAACGCGCTGTCGTTCCCCAC TTGGATGGTTCACGTTTCGAGCCTGATCGAGTGGCTCGCGGCCATGACCT ACGTTTGGAGGTGGGAAGGGGGGCGTGTGGGGTATGGGCAGTGTATTTTC AGTGGGTTAAACGTATTCTCGAGAGATTGGCCCCTTTTAGTACCGCAGTC TCGATTAGGGGACAAATCACTTGGAATTAGACTGGTTTGTCCCCAAATCG GGACTGCGGTACTAAGACGGTTAAACGCATTGTTTAGATGCTCGAGTATG ATCGAGGGGTGAAAGGTGTGCTCGAGATTTTGAAAACGTGCCCTGGAAGG CTGAAACGTTGTTCTCCTCAAAAATGTTTTCGTCGGGCCTTGCTGCCGTT CCCTTGCCGCCAGGTTCGCTGATGTGTCGGGCTTGAACGAGTGGAAGGGA CTGACCTGGGGCATGCTCCCTCTGCATACGAGCGGGCTCATCGCCTGCAC GTACCACATCTTCTACAACTCCCCGGAGCTGATCTCGCTCGTGGCGATGC AGGTGCGAGGAGCCGTCTGCCGCGCGCGGCCCACGTCCTTTGGTTGTTTA GTTGATTTGATGGGTTGGTTGGTTGGTCGGTTGGTTGGTTGTTTTGAATT GTTCACGCCTCGAACAGATCAGATGGATCATTTCCAGTTCATGATCTAGA TCCTTCAGGGAAGATATATATATATATCCCTGGTCCGTATGAGCTGTATG ATCTGTATGATCTAGCTCTTGTTGCCGGGTGGGACCAGTGCAACCTGCAA GATCTAGCACATGTCTCACCGATTGGATCTGTACCCCGAGTATGCAGATC CCGCACAACCCTCCGCAAGGGCAGGTGAGGAACTACATGATCTACTGTAC ATAAGTAGATCATGAGCTGGTTGGGGTGCGGATTCTTTGGTTGGTTGGTT GTTTCAATTGGCGATATGTTTGAGCGATTCGTTGGTTGGTTGGCCGATTG GTTGGTTGGGTCGGTCGTTCGATTGGTTGGTTGGTGGGTTTGATTGGTTG CTTTTTCGTGTGCTGATTGAGGTTCCTCGTCCCTCAAGAACGCCCGACCC CTCCAGAACCAACGCAAAACGCCAACTGCCGCCACGGGTTTCGTTTTCCT CGCTTCCAAGTCTTTCCATCTCTACACACCGACAGCTACGCGACGATGTC GCTCGCCTAGTATTGGGCGCCCGCAGCTCATCCACCGTGCTAGCACCCGG TGGTGTGTTGATACCATCTTAACATTGTAACCCGACCTGCGCTCCGCCCC GGCATTGGAGGGATGCGAGGGGCCAGGGTCGTCCGACTACGGCCGCGCAT GATAATGGGTACCCCCCCCCCCCCCCCCGCCCCCCGGCCCTTCCCGCTTG GTTCCCCTTCCCCTCCCCGCCATCTTATCTCCACAACAATCTTACGTGTT CTCCTGCCGTCAAAACGCACCCTGAATACCTGCGCGCGCATGGGTTTTGC CTGCGCAATTGCAACACAACAATGGCGACGACGGGTAAAGGCGGGGCTGA CGTGCTTCGGAAACGCCACCATGGCATTCGCGACTTGGAGGGTGTGGCAA GCGGGCAAGCAGGCGTGGAAGGGGGACGAGGTGGAAGAAGCCGAGGCGGC GGCTGAGGCGGCGGCGGTAGCTTCTGCCGATGGGTGAGCGAGCGAGGGCT GTACAGATCCTTTTGCTTAAATCCCAGAACGAATGCCGGAGAAATAATCT TGGGACTTTAAACCCCAACCCTGTCCGAAACTCCAACCGCCTAGGAAACT TGTCTTACGGAGGGCCGTAGTAAATAGCACCTACGGTACACACAAAAACC TTTACATTTACCTATTTTTACTAACAATATTTGGTCCCATTTACTATGCC CCCCCCCCGTAATAGAACTTAAAAAAAAAACTTGAGACATGTCATGAAGG GATATTATGGAACAATCTGTATCTGAATACATGGGATATTTTGTACACTA ATATTCAATTAAAAATTACCTATATTTAGGGACAGAGCGGTCTTTCTTTT TTTTTTTGTGCGTCTGCATTTTTGGAGTGAGCGGCGTAAGGCGCGAAGCC TATATTTAGGGACAGAGCGGTCTTTTTTTTTTGCGTCCAGCATTTTTGGA GTGAGCGGCGTGAGGCGCGAAGCGATGAAGGTATAGGGGGGGAAAAGTTA ATATAACCCTGTCGACACCCGAAAAACGGGAAATAATCGACAAGTATATA CCAAGTATGGTATAATATATAAATATATAAGCGGCCTTATCAACCGCCTA CATCATAGGTTGAGCGCGAAGCAGCATGGCCATGGGGGTATCATGCTACG CACGGGTCGTGAAACTCGTTGGATTGTACCTCAGAAGACATATTACGAAT ATTACGGGGGTCCATAGTTAACGGGACCAAATTTTGTTAGTAAAAATAGG TAAATATATAGGTTTTTATGTATACCATAGGTCCTATTAACTGTATACCT CCGTAAATAGTATCGTCTAAACCATCTCCTTGACCCTGCAGCCCGTGTTA TTTTTTCCAAGTGTGGCCGATGGATGCCGTAATCCTGGTTCATTCTGTGT GCACCCCCCCCCCTCCCCCCCCCCGCCCCCGCGCACGCCTCCGAAGCCCC AAGAGGATTGAGAGTATCCCCTTTACAACTATATCCACTTTTTGGGTACG TATAACATGAAATTAGTTTTGGGCATTCTATGCTGTCGGGGAATGGTTAT AACCCGTCTAGGGCTGCACTCACGTCGTGGGGAAAACATGGTTGATAGTC CACCCAGGTTTGGACAAAAATGGTTGATAGTCCACACGACCTTCCGCGTT GCATCTTCGTAGCCGAGACGGGCTGGCCTGACTGACTGAATGTCCTCTTC CTCCGTTTTTATCGGATGGCGTTGGCAATTCGAGAGGGGCTGCCTGCGAG GCTCGCAATTGAAAATCGCTTGTGAATGTTTGGACACGATGGCCGTCAGC CACGTTATAAACCTCGGGGGAAGTTTTCTTGTTTTTTTTTTCGGTTGGGA TCGAAGAAGCAATTTATTGTGATAGTTGCCTTGGTGTTTCTTTCGAGCCA TAACTGTTCGCAATTTCAATGGAAAAACCTTATCAATAGGTCGTCAAGGC AACCATCCAACCGGCACTTCTGCGCCCCTCACGTGAATCCTTACGGAAAC CGTTTCCCCGTGTCCCGGTGTCCCCTCTCCCCTCCCCCTTCCTTCCCTTG CCCTGCTGCGTGCATGCCGCCGTTTCGTAGAGAAACCTCCTCCTCTCCCC TGTCTGGCAGCGACGCGTCCTTTTACGCGCAAATCCTGGGCATCACGGTC GTGGGCGCGGGGCTGGTCAAGTGGGGGGAGCTGCTGGTGGACTTCCCTTT CGAGCCCTCGTATGTCGCGGCAGCCGCGCTTATCCTTGGGCCAACCGCCC TCAACGCCAAGAAATGGGCAGATAGGAGCGCCGACCCGTCGGCCCCGATT AAGGGCATCATTTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig8322:8381..11895-

>mRNA_M-pyrifera_M_contig8322.19435.1 ID=mRNA_M-pyrifera_M_contig8322.19435.1|Name=mRNA_M-pyrifera_M_contig8322.19435.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1254bp|location=Sequence derived from alignment at M-pyrifera_M_contig8322:8381..11895- (Macrocystis pyrifera P11B4 male)
GTACTCGCAGCGGCGCACGCGGAACCAGCCAACGCGCTGTCGTTCCCCAC
TTGGATGGTTCACGTTTCGAGCCTGATCGAGTGGCTCGCGGCCATGACCT
ACGTTTGGAGGTACTCGCAGCGGCGCACGCGGAACCAGCCAACGCGCTGT
CGTTCCCCACTTGGATGGTTCACGTTTCGAGCCTGATCGAGTGGCTCGCG
GCCATGACCTACGTTTGGAGGTTCGCTGATGTGTCGGGCTTGAACGAGTG
GAAGGGACTGACCTGGGGCATGCTCCCTCTGCATACGAGCGGGCTCATCG
CCTGCACGTACCACATCTTCTACAACTCCCCGGAGCTGATCTCGCTCGTG
GCGATGCAGGTTCGCTGATGTGTCGGGCTTGAACGAGTGGAAGGGACTGA
CCTGGGGCATGCTCCCTCTGCATACGAGCGGGCTCATCGCCTGCACGTAC
CACATCTTCTACAACTCCCCGGAGCTGATCTCGCTCGTGGCGATGCAGGC
GGGGCTGACGTGCTTCGGAAACGCCACCATGGCATTCGCGACTTGGAGGG
TGTGGCAAGCGGGCAAGCAGGCGTGGAAGGGGGACGAGGTGGAAGAAGCC
GAGGCGGCGGCTGAGGCGGCGGCGGTAGCTTCTGCCGATGGGCGGGGCTG
ACGTGCTTCGGAAACGCCACCATGGCATTCGCGACTTGGAGGGTGTGGCA
AGCGGGCAAGCAGGCGTGGAAGGGGGACGAGGTGGAAGAAGCCGAGGCGG
CGGCTGAGGCGGCGGCGGTAGCTTCTGCCGATGGAGAAACCTCCTCCTCT
CCCCTGTCTGGCAGCGACGCGTCCTTTTACGCGCAAATCCTGGGCATCAC
GGTCGTGGGCGCGGGGCTGGTCAAGTGGGGGGAGCTGCTGGTGGACTTCC
CTTTCGAGCCCTCGTATGTCGCGGCAGCCGCGCTTATCCTTGGGCCAACC
GCCCTCAACGCCAAGAAATGGGCAGATAGGAGCGCCGACCCGTCGGCCCC
GATTAAGGGCATCATTTGAAGAAACCTCCTCCTCTCCCCTGTCTGGCAGC
GACGCGTCCTTTTACGCGCAAATCCTGGGCATCACGGTCGTGGGCGCGGG
GCTGGTCAAGTGGGGGGAGCTGCTGGTGGACTTCCCTTTCGAGCCCTCGT
ATGTCGCGGCAGCCGCGCTTATCCTTGGGCCAACCGCCCTCAACGCCAAG
AAATGGGCAGATAGGAGCGCCGACCCGTCGGCCCCGATTAAGGGCATCAT
TTGA
back to top