mRNA_M-pyrifera_M_contig83124.19414.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83124.19414.1
Unique NamemRNA_M-pyrifera_M_contig83124.19414.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig83124.19414.1 vs. uniprot
Match: L8HAW3_ACACA (Clu domain-containing protein (Fragment) n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HAW3_ACACA)

HSP 1 Score: 100 bits (249), Expect = 2.150e-22
Identity = 52/110 (47.27%), Postives = 70/110 (63.64%), Query Frame = 1
Query:    1 RDWNVEFQRILEMPNGTPQERLERALRVRKFKGDFEEKALQHARTIIEEVHLPNLQKSIRSLDVGGQAGGEKYMADNIFFKFAIDSSNLYGGDEHAMKAASHELMGLRSY 330
            R+WN EFQ +LE+P  T +ERL+R   +     DF   A  + + II E  LP   ++I+   VGG AGG KY+ + IFFKFA+D   +YG DE+AMKAA+H+L GL  Y
Sbjct:  653 RNWNEEFQSLLELPVVTEKERLKRYELIHNLAQDFSITAKLYGKIIIAEAFLPRKYQTIKPCVVGGLAGGPKYIYNGIFFKFAMDDLGIYGSDENAMKAAAHDLKGLMRY 762          
BLAST of mRNA_M-pyrifera_M_contig83124.19414.1 vs. uniprot
Match: A0A2P6NDL7_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NDL7_9EUKA)

HSP 1 Score: 100 bits (249), Expect = 2.180e-22
Identity = 49/110 (44.55%), Postives = 73/110 (66.36%), Query Frame = 1
Query:    1 RDWNVEFQRILEMPNGTPQERLERALRVRKFKGDFEEKALQHARTIIEEVHLPNLQKSIRSLDVGGQAGGEKYMADNIFFKFAIDSSNLYGGDEHAMKAASHELMGLRSY 330
            R+WN EFQ+IL++P  T +ER++R  ++ +   +FE  ++ + + II E  L   QK+I+ + +GGQAGGEKY+   I +KFA D   +YGGDE  MK+AS+E  GL  Y
Sbjct:  249 RNWNEEFQKILDLPQRTTEERVKRFEQISQLASEFERTSILYGKIIINEETLSIDQKTIKPISIGGQAGGEKYVHAGILYKFAKDWKGIYGGDEFCMKSASNEQKGLTRY 358          
BLAST of mRNA_M-pyrifera_M_contig83124.19414.1 vs. uniprot
Match: L8GEL6_ACACA (Clu domain-containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GEL6_ACACA)

HSP 1 Score: 99.0 bits (245), Expect = 6.510e-22
Identity = 50/110 (45.45%), Postives = 71/110 (64.55%), Query Frame = 1
Query:    1 RDWNVEFQRILEMPNGTPQERLERALRVRKFKGDFEEKALQHARTIIEEVHLPNLQKSIRSLDVGGQAGGEKYMADNIFFKFAIDSSNLYGGDEHAMKAASHELMGLRSY 330
            ++WN +FQ +L+MP        E+  ++ +   DF   A  + + II E+ LP  +K+I+ +  GGQAGGEKY+   IFFKFA+D   +YGGDE+AMKAASH+L GL  Y
Sbjct:  328 KNWNTDFQHLLDMPPSA-----EKFTKLARLAHDFVFAAETYGKIIISELGLPVEKKTIKPVAAGGQAGGEKYIVQGIFFKFALDIFGIYGGDEYAMKAASHDLKGLIHY 432          
BLAST of mRNA_M-pyrifera_M_contig83124.19414.1 vs. uniprot
Match: UPI0006449048 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006449048)

HSP 1 Score: 97.1 bits (240), Expect = 3.540e-21
Identity = 49/110 (44.55%), Postives = 71/110 (64.55%), Query Frame = 1
Query:    1 RDWNVEFQRILEMPNGTPQERLERALRVRKFKGDFEEKALQHARTIIEEVHLPNLQKSIRSLDVGGQAGGEKYMADNIFFKFAIDSSNLYGGDEHAMKAASHELMGLRSY 330
            R+W++EF + L+M +    E L R+  ++K   +F + A +H  TII+E  + +   SI  +DVGG AGG+K++ D IF+KFA D   +YGGD +AMKAA HEL GL  Y
Sbjct:  377 RNWSLEFWKALQMEHNCGVENLMRSQTIQKIAEEFVQVATKHGITIIKERGMLSGSHSIPPIDVGGVAGGQKFLKDGIFYKFAFDVYGIYGGDAYAMKAAGHELKGLMGY 486          
BLAST of mRNA_M-pyrifera_M_contig83124.19414.1 vs. uniprot
Match: A0A0L0DSU4_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DSU4_THETB)

HSP 1 Score: 96.7 bits (239), Expect = 4.940e-21
Identity = 52/112 (46.43%), Postives = 70/112 (62.50%), Query Frame = 1
Query:    1 RDWNVEFQRILEMPNGTPQERLERALRVRKFKGDFEEKALQHARTIIEEVHLPN--LQKSIRSLDVGGQAGGEKYMADNIFFKFAIDSSNLYGGDEHAMKAASHELMGLRSY 330
            RDWN EFQ +LE+P  TP ERL RA R+      F E A   AR I++E  LP    ++ + + + GG AGGEKY+  ++FFKFA DS  +Y G + A+ AA  EL GLR++
Sbjct:    4 RDWNAEFQTLLELPVATPHERLVRAARLYALTSTFAETAQAIARIIVDEAGLPQGAPRRILPATEAGGVAGGEKYVVASMFFKFATDSHGIYAGAQFAIAAAGLELEGLRAF 115          
BLAST of mRNA_M-pyrifera_M_contig83124.19414.1 vs. uniprot
Match: A0A2P6N5R7_9EUKA (ABC transporter B family member 11-like n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N5R7_9EUKA)

HSP 1 Score: 94.7 bits (234), Expect = 2.350e-20
Identity = 53/113 (46.90%), Postives = 67/113 (59.29%), Query Frame = 1
Query:    1 RDWNVEFQRILEMPNGTPQERLERALRVRKFKG---DFEEKALQHARTIIEEVHLPNLQKSIRSLDVGGQAGGEKYMADNIFFKFAIDSSNLYGGDEHAMKAASHELMGLRSY 330
            RDWN E+Q IL+MP+          ++ RK K    DF   A  + R II E  LP   ++IR + VGG AGGEK++   I FKF +D   LY GD +AMKAASHEL GL+ Y
Sbjct:  350 RDWNAEYQSILDMPDSK--------IKYRKLKSLATDFVYAAETYGRIIISEHCLPLSSRTIRPVTVGGLAGGEKFIVCGILFKFCVDFHGLYNGDHNAMKAASHELKGLQQY 454          
BLAST of mRNA_M-pyrifera_M_contig83124.19414.1 vs. uniprot
Match: A0A7S4I1U1_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I1U1_9EUKA)

HSP 1 Score: 94.4 bits (233), Expect = 3.070e-20
Identity = 52/107 (48.60%), Postives = 68/107 (63.55%), Query Frame = 1
Query:    1 RDWNVEFQRILEMPNGTPQERLERALRVRKFKGDFEEKALQHARTIIEEVHLPNLQKSIRSLDV-GGQAGGEKYMADNIFFKFAIDSSNLYGGDEHAMKAASHELMG 318
            RDWN EF  +LE P       LERA ++RK + +F E A    + II E ++   QK+++++ V  G AGGEKY    IFFKFA+D ++LYG DEHAMK A HEL G
Sbjct:  231 RDWNKEFNEVLESPL------LERAEKLRKLEKEFVEVASIIGKIIISEKNVHPSQKTVKAISVDSGIAGGEKYQVKGIFFKFAVDKADLYGSDEHAMKVACHELKG 331          
BLAST of mRNA_M-pyrifera_M_contig83124.19414.1 vs. uniprot
Match: A0A2P6N2S8_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N2S8_9EUKA)

HSP 1 Score: 93.6 bits (231), Expect = 5.940e-20
Identity = 51/110 (46.36%), Postives = 66/110 (60.00%), Query Frame = 1
Query:    4 DWNVEFQRILEMPNGTPQERLERALRVRKFKGDFEEKALQHARTIIEEVHLPNLQKSIR-SLDVGGQAGGEKYMADNIFFKFAIDSSNLYGGDEHAMKAASHELMGLRSY 330
            DWN EFQ+IL +P  T  E+L +   +     DF   A    + II E +L    ++I  + +VGG AGGEKY+   I FKFAID  NLYGGD +AMKAA+HEL  +  Y
Sbjct:  170 DWNDEFQKILALPENTEDEKLHKYSELSSLNKDFVHIAKTFGKIIISERYLHAKHRTINPTTEVGGVAGGEKYVYHGILFKFAIDWRNLYGGDHNAMKAANHELQAVTRY 279          
BLAST of mRNA_M-pyrifera_M_contig83124.19414.1 vs. uniprot
Match: L8HFE9_ACACA (Leucine-rich repeat-containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HFE9_ACACA)

HSP 1 Score: 89.4 bits (220), Expect = 1.160e-19
Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = 1
Query:   88 KFKGDFEEKALQHARTIIEEVHLPNLQKSIRSLDVGGQAGGEKYMADNIFFKFAIDSSNLYGGDEHAMKAASHELMGLRSY 330
            K   DF   A  + + II E+ LP  +K+I+ + VGGQAGGEKY+   IFFKFA+D   +YGGDE AMKAASH+L GL  Y
Sbjct:   20 KLAHDFVFAAETYGKIIISELSLPEPKKTIKPMAVGGQAGGEKYIVQGIFFKFALDLYGIYGGDEFAMKAASHDLKGLTHY 100          
BLAST of mRNA_M-pyrifera_M_contig83124.19414.1 vs. uniprot
Match: L8H7K1_ACACA (Clu domain-containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H7K1_ACACA)

HSP 1 Score: 92.0 bits (227), Expect = 2.020e-19
Identity = 52/120 (43.33%), Postives = 69/120 (57.50%), Query Frame = 1
Query:    7 WNVEFQRILEMPNGTPQERLERALRVRKFKGDFEEKALQHARTIIEEVHLPNLQKSIRSLDVGGQAGGEKYMADNIFFKFAIDSSNLYGGDEHAM------------KAASHELMGLRSY 330
            WN EFQ+ILE+P    Q++LE+  R+     DF+  A    + II E +LPN  K+IR+++VGG AGG+KY+   I FKFA D   LYG DE+A+            KAA  EL G   Y
Sbjct:  525 WNAEFQKILELPQDDEQQQLEKFERLSALAADFQHTAKTCGKIIISEKNLPNEFKTIRAVEVGGHAGGQKYIYHGILFKFATDWLRLYGSDEYAIPPITSDFQYCFRKAAGLELKGAMRY 644          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83124.19414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L8HAW3_ACACA2.150e-2247.27Clu domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A2P6NDL7_9EUKA2.180e-2244.55Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
L8GEL6_ACACA6.510e-2245.45Clu domain-containing protein n=1 Tax=Acanthamoeba... [more]
UPI00064490483.540e-2144.55hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A0L0DSU4_THETB4.940e-2146.43Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
A0A2P6N5R7_9EUKA2.350e-2046.90ABC transporter B family member 11-like n=1 Tax=Pl... [more]
A0A7S4I1U1_9EUKA3.070e-2048.60Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A2P6N2S8_9EUKA5.940e-2046.36Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
L8HFE9_ACACA1.160e-1954.32Leucine-rich repeat-containing protein n=1 Tax=Aca... [more]
L8H7K1_ACACA2.020e-1943.33Clu domain-containing protein n=1 Tax=Acanthamoeba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83124contigM-pyrifera_M_contig83124:506..835 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.8
Seed ortholog evalue3.3e-18
Seed eggNOG ortholog529818.AMSG_11086T0
KEGG koko:K22376
Hectar predicted targeting categoryother localisation
EggNOG free text desc.microtubule depolymerization
EggNOG OGsCOG5021@1,KOG0941@2759,KOG1280@1,KOG1280@2759,KOG1839@1,KOG1839@2759
EC2.3.2.27
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons1
Model size330
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816738.0601737-CDS-M-pyrifera_M_contig83124:505..8351622816738.0601737-CDS-M-pyrifera_M_contig83124:505..835Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83124 506..835 +
1692278149.1080017-CDS-M-pyrifera_M_contig83124:505..8351692278149.1080017-CDS-M-pyrifera_M_contig83124:505..835Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83124 506..835 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83124.19414.1prot_M-pyrifera_M_contig83124.19414.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83124 506..835 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83124.19414.1

>prot_M-pyrifera_M_contig83124.19414.1 ID=prot_M-pyrifera_M_contig83124.19414.1|Name=mRNA_M-pyrifera_M_contig83124.19414.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=110bp
RDWNVEFQRILEMPNGTPQERLERALRVRKFKGDFEEKALQHARTIIEEV
HLPNLQKSIRSLDVGGQAGGEKYMADNIFFKFAIDSSNLYGGDEHAMKAA
SHELMGLRSY
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mRNA from alignment at M-pyrifera_M_contig83124:506..835+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83124.19414.1 ID=mRNA_M-pyrifera_M_contig83124.19414.1|Name=mRNA_M-pyrifera_M_contig83124.19414.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig83124:506..835+ (Macrocystis pyrifera P11B4 male)
AGAGACTGGAATGTGGAGTTCCAAAGGATCCTCGAGATGCCGAACGGTAC CCCTCAGGAGCGACTCGAGAGAGCGCTGAGGGTGAGGAAGTTCAAGGGAG ACTTCGAGGAGAAGGCACTGCAGCATGCGCGGACGATCATCGAGGAGGTG CACCTCCCTAACCTGCAGAAGAGCATCCGCTCGCTGGACGTGGGCGGCCA GGCGGGAGGCGAGAAGTACATGGCAGACAACATCTTCTTCAAGTTTGCCA TCGACTCCTCGAACCTCTATGGCGGCGACGAGCACGCCATGAAGGCCGCC TCCCACGAGCTGATGGGGTTGCGCTCCTAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83124:506..835+

>mRNA_M-pyrifera_M_contig83124.19414.1 ID=mRNA_M-pyrifera_M_contig83124.19414.1|Name=mRNA_M-pyrifera_M_contig83124.19414.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig83124:506..835+ (Macrocystis pyrifera P11B4 male)
AGAGACTGGAATGTGGAGTTCCAAAGGATCCTCGAGATGCCGAACGGTAC
CCCTCAGGAGCGACTCGAGAGAGCGCTGAGGGTGAGGAAGTTCAAGGGAG
ACTTCGAGGAGAAGGCACTGCAGCATGCGCGGACGATCATCGAGGAGGTG
CACCTCCCTAACCTGCAGAAGAGCATCCGCTCGCTGGACGTGGGCGGCCA
GGCGGGAGGCGAGAAGTACATGGCAGACAACATCTTCTTCAAGTTTGCCA
TCGACTCCTCGAACCTCTATGGCGGCGACGAGCACGCCATGAAGGCCGCC
TCCCACGAGCTGATGGGGTTGCGCTCCTACAGAGACTGGAATGTGGAGTT
CCAAAGGATCCTCGAGATGCCGAACGGTACCCCTCAGGAGCGACTCGAGA
GAGCGCTGAGGGTGAGGAAGTTCAAGGGAGACTTCGAGGAGAAGGCACTG
CAGCATGCGCGGACGATCATCGAGGAGGTGCACCTCCCTAACCTGCAGAA
GAGCATCCGCTCGCTGGACGTGGGCGGCCAGGCGGGAGGCGAGAAGTACA
TGGCAGACAACATCTTCTTCAAGTTTGCCATCGACTCCTCGAACCTCTAT
GGCGGCGACGAGCACGCCATGAAGGCCGCCTCCCACGAGCTGATGGGGTT
GCGCTCCTAC
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