mRNA_M-pyrifera_M_contig82849.19354.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82849.19354.1
Unique NamemRNA_M-pyrifera_M_contig82849.19354.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig82849.19354.1 vs. uniprot
Match: A0A7Y2DCK2_9ACTN (DUF5317 family protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DCK2_9ACTN)

HSP 1 Score: 63.2 bits (152), Expect = 8.530e-10
Identity = 31/90 (34.44%), Postives = 54/90 (60.00%), Query Frame = 1 
Query:   31 MVLTPLAIAIGLVIGFLRGGRFDAVLENRVAAWPLLAAGIVFQTVGESFDVPGRAVVVMVGLLCLIGCAMKNLHIAGAAVAGIGVTLNMA 300
            M+LT +A+A+GL++G L GG FD +    +    L+A G++   + E FD P    +++  LL ++  A  N+H+ G  V  +G+T+N+A
Sbjct:    1 MLLTVIAVAVGLLLGRLSGGGFDRLGSTPIRFPLLMAIGLIVPALAERFDWPATNFIIVAALLAVVAFAGANMHMVGMGVVLVGITMNLA 90
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BLAST of mRNA_M-pyrifera_M_contig82849.19354.1 vs. uniprot
Match: A0A7V9V6S3_9ACTN (DUF5317 domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V9V6S3_9ACTN)

HSP 1 Score: 52.4 bits (124), Expect = 5.550e-6
Identity = 28/89 (31.46%), Postives = 47/89 (52.81%), Query Frame = 1 
Query:   40 TPLAIAIGLVIGFLRGGRFDAVLENRVAAWPLLAAGIVFQTVGESFDVPGRAVVVMVGLLCLIGCAMKNLHIAGAAVAGIGVTLNMAVL 306
            T +A+A G++IG L GGR   + +      PLL  G+  Q +G   +     V+++   L L+G A+ N  + G  +  +GV LN+ V+
Sbjct:    4 TLMAVAAGILIGVLTGGRVRHLGDRTFRLLPLLVTGVALQALGVRMESTAGLVMILASYLLLLGFAVANASLVGMWLVALGVALNLLVI 92
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82849.19354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7Y2DCK2_9ACTN8.530e-1034.44DUF5317 family protein n=1 Tax=Acidimicrobiales ba... [more]
A0A7V9V6S3_9ACTN5.550e-631.46DUF5317 domain-containing protein n=1 Tax=Actinomy... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82849contigM-pyrifera_M_contig82849:3..308 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size306
Cds size306
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816735.2569194-CDS-M-pyrifera_M_contig82849:2..3081622816735.2569194-CDS-M-pyrifera_M_contig82849:2..308Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82849 3..308 -
1692278147.5486012-CDS-M-pyrifera_M_contig82849:2..3081692278147.5486012-CDS-M-pyrifera_M_contig82849:2..308Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82849 3..308 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82849.19354.1prot_M-pyrifera_M_contig82849.19354.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82849 3..308 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82849.19354.1

>prot_M-pyrifera_M_contig82849.19354.1 ID=prot_M-pyrifera_M_contig82849.19354.1|Name=mRNA_M-pyrifera_M_contig82849.19354.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp
MLGSGLEIVDMVLTPLAIAIGLVIGFLRGGRFDAVLENRVAAWPLLAAGI
VFQTVGESFDVPGRAVVVMVGLLCLIGCAMKNLHIAGAAVAGIGVTLNMA
VL
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mRNA from alignment at M-pyrifera_M_contig82849:3..308-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82849.19354.1 ID=mRNA_M-pyrifera_M_contig82849.19354.1|Name=mRNA_M-pyrifera_M_contig82849.19354.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig82849:3..308- (Macrocystis pyrifera P11B4 male)
ATGCTCGGCAGCGGATTGGAGATCGTGGACATGGTGCTCACACCCCTCGC
AATTGCAATCGGCCTCGTCATCGGCTTCCTCCGCGGGGGTCGGTTCGACG
CCGTGCTCGAAAACCGTGTTGCGGCATGGCCGCTGCTCGCCGCCGGCATC
GTCTTCCAGACGGTCGGTGAGAGCTTCGACGTCCCGGGCCGGGCCGTCGT
GGTCATGGTCGGGCTGCTGTGCCTGATCGGGTGCGCCATGAAGAACCTGC
ACATCGCCGGGGCCGCGGTCGCCGGCATCGGCGTCACGCTCAACATGGCC
GTGCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82849:3..308-

>mRNA_M-pyrifera_M_contig82849.19354.1 ID=mRNA_M-pyrifera_M_contig82849.19354.1|Name=mRNA_M-pyrifera_M_contig82849.19354.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig82849:3..308- (Macrocystis pyrifera P11B4 male)
ATGCTCGGCAGCGGATTGGAGATCGTGGACATGGTGCTCACACCCCTCGC
AATTGCAATCGGCCTCGTCATCGGCTTCCTCCGCGGGGGTCGGTTCGACG
CCGTGCTCGAAAACCGTGTTGCGGCATGGCCGCTGCTCGCCGCCGGCATC
GTCTTCCAGACGGTCGGTGAGAGCTTCGACGTCCCGGGCCGGGCCGTCGT
GGTCATGGTCGGGCTGCTGTGCCTGATCGGGTGCGCCATGAAGAACCTGC
ACATCGCCGGGGCCGCGGTCGCCGGCATCGGCGTCACGCTCAACATGGCC
GTGCTCATGCTCGGCAGCGGATTGGAGATCGTGGACATGGTGCTCACACC
CCTCGCAATTGCAATCGGCCTCGTCATCGGCTTCCTCCGCGGGGGTCGGT
TCGACGCCGTGCTCGAAAACCGTGTTGCGGCATGGCCGCTGCTCGCCGCC
GGCATCGTCTTCCAGACGGTCGGTGAGAGCTTCGACGTCCCGGGCCGGGC
CGTCGTGGTCATGGTCGGGCTGCTGTGCCTGATCGGGTGCGCCATGAAGA
ACCTGCACATCGCCGGGGCCGCGGTCGCCGGCATCGGCGTCACGCTCAAC
ATGGCCGTGCTC
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