mRNA_M-pyrifera_M_contig8193.19170.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8193.19170.1
Unique NamemRNA_M-pyrifera_M_contig8193.19170.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8193.19170.1 vs. uniprot
Match: A0A6H5KMH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMH3_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 2.060e-22
Identity = 50/72 (69.44%), Postives = 58/72 (80.56%), Query Frame = 3 
Query:    3 VIERLDIESVMATLDGDTITSDTVKDLFAGLSEKAKNSTTRVARLPSGQLSLEELKSLKERLDAKLQHLRST 218
            VIERLDIE+ MA LD +TITSD VKDLFAGL EKAK S+TRVA LPS QL+  EL + K+RL  +L+HLRST
Sbjct:    6 VIERLDIEAAMAALDDETITSDKVKDLFAGLGEKAKASSTRVAALPSSQLNCAELAACKQRLKDRLEHLRST 77
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8193.19170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KMH3_9PHAE2.060e-2269.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8193contigM-pyrifera_M_contig8193:6283..6617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size335
Cds size234
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8193.19170.1prot_M-pyrifera_M_contig8193.19170.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8193 6315..6548 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816726.61513-UTR-M-pyrifera_M_contig8193:6282..63141622816726.61513-UTR-M-pyrifera_M_contig8193:6282..6314Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8193 6283..6314 +
1692278143.070916-UTR-M-pyrifera_M_contig8193:6282..63141692278143.070916-UTR-M-pyrifera_M_contig8193:6282..6314Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8193 6283..6314 +
1622816726.639718-UTR-M-pyrifera_M_contig8193:6548..66171622816726.639718-UTR-M-pyrifera_M_contig8193:6548..6617Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8193 6549..6617 +
1692278143.0993812-UTR-M-pyrifera_M_contig8193:6548..66171692278143.0993812-UTR-M-pyrifera_M_contig8193:6548..6617Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8193 6549..6617 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816726.6290352-CDS-M-pyrifera_M_contig8193:6314..65481622816726.6290352-CDS-M-pyrifera_M_contig8193:6314..6548Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8193 6315..6548 +
1692278143.0818264-CDS-M-pyrifera_M_contig8193:6314..65481692278143.0818264-CDS-M-pyrifera_M_contig8193:6314..6548Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8193 6315..6548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8193.19170.1

>prot_M-pyrifera_M_contig8193.19170.1 ID=prot_M-pyrifera_M_contig8193.19170.1|Name=mRNA_M-pyrifera_M_contig8193.19170.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=78bp
MATLDGDTITSDTVKDLFAGLSEKAKNSTTRVARLPSGQLSLEELKSLKE
RLDAKLQHLRSTGVLFDMKGVGDLNQI*
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mRNA from alignment at M-pyrifera_M_contig8193:6283..6617+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8193.19170.1 ID=mRNA_M-pyrifera_M_contig8193.19170.1|Name=mRNA_M-pyrifera_M_contig8193.19170.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=335bp|location=Sequence derived from alignment at M-pyrifera_M_contig8193:6283..6617+ (Macrocystis pyrifera P11B4 male)
AGGTAATCGAAAGGCTCGACATCGAATCGGTTATGGCCACGCTAGATGGT
GACACCATCACGTCAGACACCGTCAAGGACTTGTTCGCCGGCCTGAGTGA
GAAGGCGAAAAACTCAACGACTCGGGTTGCGCGGTTGCCCTCGGGGCAGC
TAAGCCTCGAAGAACTTAAATCGTTAAAGGAGCGCTTGGACGCGAAGCTG
CAACATCTTCGTTCAACGGGAGTTTTGTTTGATATGAAGGGGGTGGGGGA
CCTTAACCAAATATGACGCCTTGCGGTGATAATCGGCCAAATTTTGTTCT
TTCCCTCACGGATTTTCTGTTTTCTAGAATACCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8193:6283..6617+

>mRNA_M-pyrifera_M_contig8193.19170.1 ID=mRNA_M-pyrifera_M_contig8193.19170.1|Name=mRNA_M-pyrifera_M_contig8193.19170.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig8193:6283..6617+ (Macrocystis pyrifera P11B4 male)
ATGGCCACGCTAGATGGTGACACCATCACGTCAGACACCGTCAAGGACTT
GTTCGCCGGCCTGAGTGAGAAGGCGAAAAACTCAACGACTCGGGTTGCGC
GGTTGCCCTCGGGGCAGCTAAGCCTCGAAGAACTTAAATCGTTAAAGGAG
CGCTTGGACGCGAAGCTGCAACATCTTCGTTCAACGGGAGTTTTGTTTGA
TATGAAGGGGGTGGGGGACCTTAACCAAATATGAATGGCCACGCTAGATG
GTGACACCATCACGTCAGACACCGTCAAGGACTTGTTCGCCGGCCTGAGT
GAGAAGGCGAAAAACTCAACGACTCGGGTTGCGCGGTTGCCCTCGGGGCA
GCTAAGCCTCGAAGAACTTAAATCGTTAAAGGAGCGCTTGGACGCGAAGC
TGCAACATCTTCGTTCAACGGGAGTTTTGTTTGATATGAAGGGGGTGGGG
GACCTTAACCAAATATGA
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