mRNA_M-pyrifera_M_contig8147.19057.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8147.19057.1
Unique NamemRNA_M-pyrifera_M_contig8147.19057.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8147.19057.1 vs. uniprot
Match: D7G1H5_ECTSI (Regucalcin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1H5_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 9.540e-8
Identity = 23/36 (63.89%), Postives = 33/36 (91.67%), Query Frame = -1 
Query:  397 SIGLDDRQRLDQPNAGALFAIRLQGIKGVPESCYHG 504
            S+GL+D+QR++QPNAGA+FAIRL+G+KG+PE  + G
Sbjct:  277 SVGLNDQQRMEQPNAGAVFAIRLEGVKGIPEPRFRG 312
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8147.19057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1H5_ECTSI9.540e-863.89Regucalcin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8147contigM-pyrifera_M_contig8147:591..1094 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size505
Cds size339
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816721.1201382-CDS-M-pyrifera_M_contig8147:590..9291622816721.1201382-CDS-M-pyrifera_M_contig8147:590..929Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8147 591..929 +
1692278139.77608-CDS-M-pyrifera_M_contig8147:590..9291692278139.77608-CDS-M-pyrifera_M_contig8147:590..929Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8147 591..929 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816721.131541-UTR-M-pyrifera_M_contig8147:929..10941622816721.131541-UTR-M-pyrifera_M_contig8147:929..1094Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8147 930..1094 +
1692278139.792971-UTR-M-pyrifera_M_contig8147:929..10941692278139.792971-UTR-M-pyrifera_M_contig8147:929..1094Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8147 930..1094 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8147.19057.1prot_M-pyrifera_M_contig8147.19057.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8147 591..929 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8147.19057.1

>prot_M-pyrifera_M_contig8147.19057.1 ID=prot_M-pyrifera_M_contig8147.19057.1|Name=mRNA_M-pyrifera_M_contig8147.19057.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp
STSGCPPGEAGSRSSRRRVPLSPKVGPGCLYVCPRSIRAVSNSTSGAVWD
QILRGLEFPCGCGQTDRQDCNYQNRDSVLQTENSRLNTQVGDLSVVSKIT
APTRAQNLRKTP*
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mRNA from alignment at M-pyrifera_M_contig8147:591..1094+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8147.19057.1 ID=mRNA_M-pyrifera_M_contig8147.19057.1|Name=mRNA_M-pyrifera_M_contig8147.19057.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig8147:591..1094+ (Macrocystis pyrifera P11B4 male)
TCCACAAGTGGTTGCCCCCCCGGTGAGGCTGGGTCGCGTAGCTCAAGGCG
CAGGGTTCCGTTGAGCCCGAAAGTTGGTCCAGGCTGCTTGTATGTGTGTC
CGCGGTCGATTCGCGCGGTATCCAACTCGACGTCGGGAGCGGTTTGGGAC
CAGATTTTGCGAGGGTTGGAGTTTCCTTGTGGCTGCGGTCAGACAGACAG
ACAAGATTGCAATTACCAAAACAGAGACTCAGTTCTACAAACTGAGAATA
GCCGACTGAATACCCAAGTCGGCGACTTATCCGTAGTCAGCAAAATCACA
GCCCCTACAAGAGCGCAGAACCTCCGAAAGACGCCATAAGGTAAAGCAGC
ATGAAAAAAACTGGAGGTACACAACTAACCACAACAAAAGGAATTAACCA
TGGTAGCACGACTCCGGGACCCCCTTGATCCCTTGGAGGCGGATGGCAAA
CAGAGCCCCGGCGTTGGGCTGGTCCAAGCGCTGCCGGTCGTCGAGCCCGA
TGCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8147:591..1094+

>mRNA_M-pyrifera_M_contig8147.19057.1 ID=mRNA_M-pyrifera_M_contig8147.19057.1|Name=mRNA_M-pyrifera_M_contig8147.19057.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig8147:591..1094+ (Macrocystis pyrifera P11B4 male)
TCCACAAGTGGTTGCCCCCCCGGTGAGGCTGGGTCGCGTAGCTCAAGGCG
CAGGGTTCCGTTGAGCCCGAAAGTTGGTCCAGGCTGCTTGTATGTGTGTC
CGCGGTCGATTCGCGCGGTATCCAACTCGACGTCGGGAGCGGTTTGGGAC
CAGATTTTGCGAGGGTTGGAGTTTCCTTGTGGCTGCGGTCAGACAGACAG
ACAAGATTGCAATTACCAAAACAGAGACTCAGTTCTACAAACTGAGAATA
GCCGACTGAATACCCAAGTCGGCGACTTATCCGTAGTCAGCAAAATCACA
GCCCCTACAAGAGCGCAGAACCTCCGAAAGACGCCATAATCCACAAGTGG
TTGCCCCCCCGGTGAGGCTGGGTCGCGTAGCTCAAGGCGCAGGGTTCCGT
TGAGCCCGAAAGTTGGTCCAGGCTGCTTGTATGTGTGTCCGCGGTCGATT
CGCGCGGTATCCAACTCGACGTCGGGAGCGGTTTGGGACCAGATTTTGCG
AGGGTTGGAGTTTCCTTGTGGCTGCGGTCAGACAGACAGACAAGATTGCA
ATTACCAAAACAGAGACTCAGTTCTACAAACTGAGAATAGCCGACTGAAT
ACCCAAGTCGGCGACTTATCCGTAGTCAGCAAAATCACAGCCCCTACAAG
AGCGCAGAACCTCCGAAAGACGCCATAA
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