mRNA_M-pyrifera_M_contig81317.19021.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81317.19021.1
Unique NamemRNA_M-pyrifera_M_contig81317.19021.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig81317.19021.1 vs. uniprot
Match: A0A3M1DBJ2_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Candidatus Parcubacteria bacterium TaxID=2762014 RepID=A0A3M1DBJ2_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 3.660e-5
Identity = 25/63 (39.68%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:   64 ERTISVAVPAGTYSVTAASYDGYDNRETT--GVQEYEQYVLQFLDAGGNVLDTTTPTADLPEG 246
            + T  V +PAG Y+++  SYDGY+ RE T    Q  EQ+ +  +D+ G  + T  PT DL +G
Sbjct:   92 QETQPVTLPAGRYTISYYSYDGYEGREKTDPNTQNKEQWNMLLIDSSGKTITTFGPTPDLKDG 154
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81317.19021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A3M1DBJ2_9BACT3.660e-539.68Uncharacterized protein (Fragment) n=1 Tax=Candida... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81317contigM-pyrifera_M_contig81317:3..362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size360
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816719.5270717-CDS-M-pyrifera_M_contig81317:2..3621622816719.5270717-CDS-M-pyrifera_M_contig81317:2..362Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81317 3..362 -
1692278138.9980097-CDS-M-pyrifera_M_contig81317:2..3621692278138.9980097-CDS-M-pyrifera_M_contig81317:2..362Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81317 3..362 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81317.19021.1prot_M-pyrifera_M_contig81317.19021.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81317 3..362 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81317.19021.1

>prot_M-pyrifera_M_contig81317.19021.1 ID=prot_M-pyrifera_M_contig81317.19021.1|Name=mRNA_M-pyrifera_M_contig81317.19021.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
PNTGYGNAWQASVYANPDRVNERTISVAVPAGTYSVTAASYDGYDNRETT
GVQEYEQYVLQFLDAGGNVLDTTTPTADLPEGNTASWLGSVGQVTLAADA
VAVRALHLYAGQAIGPHSVQ
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mRNA from alignment at M-pyrifera_M_contig81317:3..362-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81317.19021.1 ID=mRNA_M-pyrifera_M_contig81317.19021.1|Name=mRNA_M-pyrifera_M_contig81317.19021.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig81317:3..362- (Macrocystis pyrifera P11B4 male)
CCCAACACCGGCTACGGCAACGCCTGGCAAGCGTCGGTCTACGCCAACCC
GGACCGGGTCAACGAGCGCACCATCTCGGTGGCCGTTCCCGCCGGTACCT
ACTCGGTCACGGCCGCCAGCTACGACGGCTACGACAACCGTGAGACCACG
GGTGTGCAGGAATACGAGCAGTACGTGCTCCAGTTCCTCGACGCCGGTGG
CAACGTGCTCGACACCACCACGCCCACCGCCGACCTGCCCGAGGGCAACA
CCGCCAGCTGGCTCGGCTCGGTCGGCCAGGTGACCCTCGCCGCCGACGCC
GTGGCCGTTCGTGCCCTCCACCTCTACGCCGGTCAGGCCATCGGCCCGCA
CTCCGTGCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81317:3..362-

>mRNA_M-pyrifera_M_contig81317.19021.1 ID=mRNA_M-pyrifera_M_contig81317.19021.1|Name=mRNA_M-pyrifera_M_contig81317.19021.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig81317:3..362- (Macrocystis pyrifera P11B4 male)
CCCAACACCGGCTACGGCAACGCCTGGCAAGCGTCGGTCTACGCCAACCC
GGACCGGGTCAACGAGCGCACCATCTCGGTGGCCGTTCCCGCCGGTACCT
ACTCGGTCACGGCCGCCAGCTACGACGGCTACGACAACCGTGAGACCACG
GGTGTGCAGGAATACGAGCAGTACGTGCTCCAGTTCCTCGACGCCGGTGG
CAACGTGCTCGACACCACCACGCCCACCGCCGACCTGCCCGAGGGCAACA
CCGCCAGCTGGCTCGGCTCGGTCGGCCAGGTGACCCTCGCCGCCGACGCC
GTGGCCGTTCGTGCCCTCCACCTCTACGCCGGTCAGGCCATCGGCCCGCA
CTCCGTGCAGCCCAACACCGGCTACGGCAACGCCTGGCAAGCGTCGGTCT
ACGCCAACCCGGACCGGGTCAACGAGCGCACCATCTCGGTGGCCGTTCCC
GCCGGTACCTACTCGGTCACGGCCGCCAGCTACGACGGCTACGACAACCG
TGAGACCACGGGTGTGCAGGAATACGAGCAGTACGTGCTCCAGTTCCTCG
ACGCCGGTGGCAACGTGCTCGACACCACCACGCCCACCGCCGACCTGCCC
GAGGGCAACACCGCCAGCTGGCTCGGCTCGGTCGGCCAGGTGACCCTCGC
CGCCGACGCCGTGGCCGTTCGTGCCCTCCACCTCTACGCCGGTCAGGCCA
TCGGCCCGCACTCCGTGCAG
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