mRNA_M-pyrifera_M_contig81261.19004.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig81261.19004.1 vs. uniprot
Match: A0A5A8CRW7_CAFRO (Leucine--tRNA ligase n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CRW7_CAFRO) HSP 1 Score: 86.3 bits (212), Expect = 3.590e-17 Identity = 46/124 (37.10%), Postives = 65/124 (52.42%), Query Frame = 1 Query: 1 YRDICNRIGLPLHPVLMKRFANVACVTIAPICPHWAEEVYEVIGRPGGYPTVTAAPWPSTSSEEAALADAGRWLEQVLHACRDAAKSARRVAEKKKGKGTAPSGPIDTIRIYAVSDFTTWQKTV 372 YRD C ++G +H L F + + IAPICPHWAEEV+E IG PGG ++ A WP + +AA+ G WL + H+ R + + + A K KG A + + IY + WQ V Sbjct: 932 YRDACEKLGEEMHGELAAWFMHAQAIAIAPICPHWAEEVWETIGCPGGAKSIHEARWPDGVAADAAVLSRGTWLLGLAHSIRASVDAEVKKAAK---KGDADAS-FNACTIYTRKAYQDWQVAV 1051
BLAST of mRNA_M-pyrifera_M_contig81261.19004.1 vs. uniprot
Match: A0A024GMT2_9STRA (Leucine--tRNA ligase n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GMT2_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 5.690e-11 Identity = 40/127 (31.50%), Postives = 65/127 (51.18%), Query Frame = 1 Query: 1 YRDICNRIGLPLHPVLMKRFANVACVTIAPICPHWAEEVYEVIGRPGGYPTVTAAPWPSTSSEEAALADAGRWLEQVLHACRDA-AKSARRVAEKKKGKGTAPSGPIDTIR----IYAVSDFTTWQK 366 YRD+C R + +H ++ R+ N + ++PICPH+ E ++ ++G G V+ WP S + +L AG +L + + RD AKS+ K KG S + T R IY ++F WQ+ Sbjct: 847 YRDLCTRGEIAMHSKVLDRYVNAQTIMLSPICPHFCEHIWSIMGNSG---FVSTTSWPIVDSVDHSLLRAGDFLGKTIRHFRDIQAKSSGNNRSKSSTKG---SEAVPTKRSHAHIYLATEFPLWQQ 967
BLAST of mRNA_M-pyrifera_M_contig81261.19004.1 vs. uniprot
Match: E4X998_OIKDI (Leucine--tRNA ligase n=1 Tax=Oikopleura dioica TaxID=34765 RepID=E4X998_OIKDI) HSP 1 Score: 60.8 bits (146), Expect = 2.820e-8 Identity = 37/122 (30.33%), Postives = 60/122 (49.18%), Query Frame = 1 Query: 1 YRDICNRIGLPLHPVLMKRFANVACVTIAPICPHWAEEVYEVIGRPGGYPTVTAAPWPSTSSEEAALADAGRWLEQVLHACRDAAKSARRVAEKKKGKGTAPSGPIDTIRIYAVSDFTTWQK 366 YR+IC G+ + L+ RF V + I PICPH AEEV+E+ G+ G + P+P + L ++ +L + + RD + + KKGK AP+ +Y ++ WQ+ Sbjct: 787 YREICGSEGM--NAKLVDRFIEVQTLLICPICPHIAEEVWEITGKKG---FAVSTPFPEILEYDPVLIESSEFLAETV---RDVRLKLKDRLQPKKGK--APAEIPTNCTVYVAKEYPAWQR 898
BLAST of mRNA_M-pyrifera_M_contig81261.19004.1 vs. uniprot
Match: A0A8J9UK77_9NEOP ((lesser marbled fritillary) hypothetical protein n=1 Tax=Brenthis ino TaxID=405034 RepID=A0A8J9UK77_9NEOP) HSP 1 Score: 60.8 bits (146), Expect = 2.830e-8 Identity = 33/124 (26.61%), Postives = 56/124 (45.16%), Query Frame = 1 Query: 1 YRDICNRIGLPLHPVLMKRFANVACVTIAPICPHWAEEVYEVIGRPGGYPTVTAAPWPSTSSEEAALADAGRWLEQVLHACRDAAKSARRVAEKKKGKGTAPSGPIDTIRIYAVSDFTTWQKTV 372 YR++C G+ H L R+ V +AP+CPH AE V++++G ++ WP + A +L + H+ R K+ V + KKG+ P + I+ +F WQ + Sbjct: 830 YRELCGEAGV--HAALAARYGAVQAALLAPVCPHVAEHVWQLLGNKE---SILHERWPVAGEVDEVAVKASNYLMEAAHSFRIYLKNHCAVKKPKKGETVKPEPKPNKAIIWVAKEFPKWQHII 948
BLAST of mRNA_M-pyrifera_M_contig81261.19004.1 vs. uniprot
Match: A0A7S4BH41_CHRCT (Leucine--tRNA ligase n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BH41_CHRCT) HSP 1 Score: 60.1 bits (144), Expect = 5.280e-8 Identity = 36/110 (32.73%), Postives = 58/110 (52.73%), Query Frame = 1 Query: 46 LMKRFANVACVTIAPICPHWAEEVYEVIGRPGGYPTVTAAPWPSTSSEEAALADAGRWLEQVLHACRDAAKSARRVAEKKKGKGTAPSGPI-DTIRIYAVSDFTTWQKTV 372 L++++ + +API PHW EE++E++G G V A WP+ E+ ++ AG++L + HA A V + KK KG P GP + + +Y S F W+ V Sbjct: 959 LVQQWGEWQALMMAPITPHWCEEIWEIVGGKG---CVVRARWPTPRQEDPKISAAGQYLFGLTHALSTAV-----VNKDKKSKG--PQGPKPNQVNLYLASSFPRWKVLV 1058
BLAST of mRNA_M-pyrifera_M_contig81261.19004.1 vs. uniprot
Match: A0A7S0QC49_9EUKA (Leucine--tRNA ligase (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0QC49_9EUKA) HSP 1 Score: 59.7 bits (143), Expect = 7.160e-8 Identity = 39/125 (31.20%), Postives = 62/125 (49.60%), Query Frame = 1 Query: 1 YRDICNRIGLPLHPVLMKRFANVACVTIAPICPHWAEEVYEVIGRPGGYPTVTAAPWPSTSS-EEAALADAGRWLEQVLHACRDAAKSARRVAEKKKGKGTAPSGPIDTIRIYAVSDFTTWQKTV 372 YR ++GL L++++A + +API PHW EE++ +G+ G V A WPS S E+ + AG +L + H A + +KKK KG A + + +Y S F W++ V Sbjct: 977 YRTGTAQVGL--LESLLRQWAEWQAIVMAPITPHWCEELWCKLGKQG---CVVKARWPSPSQPEQPEITAAGHYLFGLAHTLSTALVN----RDKKKAKGPAEEHKPNQVNLYVASSFPRWKELV 1092
BLAST of mRNA_M-pyrifera_M_contig81261.19004.1 vs. uniprot
Match: UPI00103FEDA6 (leucine--tRNA ligase, cytoplasmic n=1 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI00103FEDA6) HSP 1 Score: 59.7 bits (143), Expect = 7.170e-8 Identity = 34/124 (27.42%), Postives = 57/124 (45.97%), Query Frame = 1 Query: 1 YRDICNRIGLPLHPVLMKRFANVACVTIAPICPHWAEEVYEVIGRPGGYPTVTAAPWPSTSSEEAALADAGRWLEQVLHACRDAAKSARRVAEKKKGKGTAPSGPIDTIRIYAVSDFTTWQKTV 372 YR++C +GL H L+ R+ +APICPH AE V+E++G ++ WP + + A +L H+ R K+ V + KKG+ P + I+ ++ WQ + Sbjct: 832 YRELCADVGL--HANLLTRYIETQAKLMAPICPHVAEHVWELLGNKR---SILHERWPVSGDIDEVAVKASNYLMDAAHSFRIYLKNHCAVKKPKKGEAPKPEKKPNKAIIWVAKEYPRWQHII 950
BLAST of mRNA_M-pyrifera_M_contig81261.19004.1 vs. uniprot
Match: D7FTL8_ECTSI (Leucine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL8_ECTSI) HSP 1 Score: 59.3 bits (142), Expect = 9.740e-8 Identity = 36/122 (29.51%), Postives = 61/122 (50.00%), Query Frame = 1 Query: 1 YRDICNRIGLPLHPVLMKRFANVACVTIAPICPHWAEEVYEVIGRPGGYPTVTAAPWPSTSSEEAALADAGRWLEQVLHACRDAAKSARRVAEKKKGKGTAPSGPIDTIRIYAVSDFTTWQK 366 YRD C + +H L+ RF V + +AP+CPH+AE + ++G G +V A WP T + ++ + ++L + L K+ R A+K KG AP + +Y S + W++ Sbjct: 886 YRDWCLKTSTLMHKTLILRFMEVQILLLAPMCPHYAEHFWGLLGH-GESGSVLKASWPQTGEVDGWMSRSFQFLSKTL-------KAFRLTAQKSKG---APK----SAHVYVASAYPQWKQ 992
BLAST of mRNA_M-pyrifera_M_contig81261.19004.1 vs. uniprot
Match: A0A0D2WYV3_CAPO3 (Leucine--tRNA ligase n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WYV3_CAPO3) HSP 1 Score: 58.9 bits (141), Expect = 1.300e-7 Identity = 36/123 (29.27%), Postives = 58/123 (47.15%), Query Frame = 1 Query: 4 RDICNRIGLPLHPVLMKRFANVACVTIAPICPHWAEEVYEVIGRPGGYPTVTAAPWPSTSSEEAALADAGRWLEQVLHACRDAAKSARRVAEKKKGKGTAPSGPIDTIRIYAVSDFTTWQKTV 372 RD + + +++RF V+ + IAPICPH+AE V+ ++GR APWP + + R++ H+ R A++ VA+ KGKG A I+ + WQ+ V Sbjct: 616 RDFYREVSSAPNRRVLERFLEVSSILIAPICPHYAEHVFSLLGRKT---LAINAPWPVAGAVDELTLKMARYISTTAHSFR--ARAQLVVAKGNKGKGPAVELKNLNGTIFYAKSYPAWQEHV 733
BLAST of mRNA_M-pyrifera_M_contig81261.19004.1 vs. uniprot
Match: A0A7S1D882_CYCTE (Leucine--tRNA ligase n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D882_CYCTE) HSP 1 Score: 56.6 bits (135), Expect = 8.130e-7 Identity = 25/78 (32.05%), Postives = 43/78 (55.13%), Query Frame = 1 Query: 1 YRDICNRIGLPLHPVLMKRFANVACVTIAPICPHWAEEVYEVIGRPGGYPTVTAAPWPSTSSEEAALADAGRWLEQVL 234 YR C +P+H +++++A V I PICPHW+E++++V+G+ G A WP++ E+ L +L L Sbjct: 411 YRSWCQDGAVPMHHDVIRKWAESLVVMICPICPHWSEKLWKVLGKEG---FAVKASWPTSDHEDKVLTRQAAFLRSSL 485 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81261.19004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig81261.19004.1 >prot_M-pyrifera_M_contig81261.19004.1 ID=prot_M-pyrifera_M_contig81261.19004.1|Name=mRNA_M-pyrifera_M_contig81261.19004.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=124bp YRDICNRIGLPLHPVLMKRFANVACVTIAPICPHWAEEVYEVIGRPGGYPback to top mRNA from alignment at M-pyrifera_M_contig81261:1..372- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig81261.19004.1 ID=mRNA_M-pyrifera_M_contig81261.19004.1|Name=mRNA_M-pyrifera_M_contig81261.19004.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig81261:1..372- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig81261:1..372- >mRNA_M-pyrifera_M_contig81261.19004.1 ID=mRNA_M-pyrifera_M_contig81261.19004.1|Name=mRNA_M-pyrifera_M_contig81261.19004.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=744bp|location=Sequence derived from alignment at M-pyrifera_M_contig81261:1..372- (Macrocystis pyrifera P11B4 male)back to top |