mRNA_M-pyrifera_M_contig81083.18968.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81083.18968.1
Unique NamemRNA_M-pyrifera_M_contig81083.18968.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig81083.18968.1 vs. uniprot
Match: A0A3M2BJ82_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2BJ82_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 3.990e-10
Identity = 40/60 (66.67%), Postives = 46/60 (76.67%), Query Frame = 1
Query:   22 GGSCNDADLAEPFGTLDIFDVVSFIEAFNAEDPSVDFFSDGAXXXXXXXXXXXXXXSGCP 201
            GG C+ AD AEPFGTLD FDV+ F+  F A+DP+ D   DG  XXXXXXXXXXXXX+GCP
Sbjct:   17 GGPCSGADFAEPFGTLDFFDVLGFLSLFTAQDPAADITDDGEFXXXXXXXXXXXXXAGCP 76          
BLAST of mRNA_M-pyrifera_M_contig81083.18968.1 vs. uniprot
Match: A0A5M4D8G0_9CYAN (Cytochrome_C554 domain-containing protein n=1 Tax=Cyanobacteria bacterium CYA TaxID=2484221 RepID=A0A5M4D8G0_9CYAN)

HSP 1 Score: 62.0 bits (149), Expect = 1.340e-9
Identity = 42/62 (67.74%), Postives = 47/62 (75.81%), Query Frame = 1
Query:   16 ELGGSCNDADLAEPFGTLDIFDVVSFIEAFNAEDPSVDFFSDGAXXXXXXXXXXXXXXSGCP 201
            E  G CNDAD AEP+GTLD FDV +F++AF+  DPS D   DG  XXXXXXXXXXXXX GCP
Sbjct:  547 EASGPCNDADFAEPYGTLDFFDVQAFLQAFSMHDPSADLTGDGLYXXXXXXXXXXXXXFGCP 608          
BLAST of mRNA_M-pyrifera_M_contig81083.18968.1 vs. uniprot
Match: A0A3M2B333_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2B333_9BACT)

HSP 1 Score: 62.0 bits (149), Expect = 1.350e-9
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = 1
Query:   31 CNDADLAEPFGTLDIFDVVSFIEAFNAEDPSVDFFSDGAXXXXXXXXXXXXXXSGCP 201
            CNDAD AEPFGTLD FDV++F++AF+ +DP+ D  SDG  XXXXXXXXXXXX +GCP
Sbjct:  640 CNDADFAEPFGTLDFFDVLAFLQAFSNQDPAADINSDGLWXXXXXXXXXXXXSAGCP 696          
BLAST of mRNA_M-pyrifera_M_contig81083.18968.1 vs. uniprot
Match: A0A3M2B5Q2_9BACT (VCBS repeat-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2B5Q2_9BACT)

HSP 1 Score: 61.2 bits (147), Expect = 2.470e-9
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 1
Query:   22 GGSCNDADLAEPFGTLDIFDVVSFIEAFNAEDPSVDFFSDGA 147
            GG CNDADLA PFGTLD FDV+ F++ F+ +DP+ D   DGA
Sbjct:  376 GGGCNDADLAMPFGTLDFFDVLEFLQLFSEQDPAADLTGDGA 417          
BLAST of mRNA_M-pyrifera_M_contig81083.18968.1 vs. uniprot
Match: A0A7Z9UCF6_9BACT (Choice-of-anchor B family protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9UCF6_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 3.070e-8
Identity = 40/62 (64.52%), Postives = 51/62 (82.26%), Query Frame = 1
Query:   16 ELGGSCNDADLAEPFGTLDIFDVVSFIEAFNAEDPSVDFFSDGAXXXXXXXXXXXXXXSGCP 201
            ++   C+DADLAEPFGTL+ FDV +F+ A+N+ D S D  +DG+XXXXXXXXXXXXXX+GCP
Sbjct:  634 DVAAGCSDADLAEPFGTLNFFDVSAFLSAYNSNDASADLNNDGSXXXXXXXXXXXXXXAGCP 695          
BLAST of mRNA_M-pyrifera_M_contig81083.18968.1 vs. uniprot
Match: A0A3M2BDU9_9BACT (Ig-like domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2BDU9_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 7.810e-8
Identity = 40/58 (68.97%), Postives = 45/58 (77.59%), Query Frame = 1
Query:   28 SCNDADLAEPFGTLDIFDVVSFIEAFNAEDPSVDFFSDGAXXXXXXXXXXXXXXSGCP 201
            SC  AD AEPFGTLD FDV  F+  F+A+DP+ D   DGA XXXXXXXXXXXXX+GCP
Sbjct:  524 SCGPADFAEPFGTLDFFDVAEFLALFSAQDPTADMNHDGAWXXXXXXXXXXXXXAGCP 581          
BLAST of mRNA_M-pyrifera_M_contig81083.18968.1 vs. uniprot
Match: A0A2D9CAX2_9BACT (PA14 domain-containing protein n=2 Tax=Phycisphaerae TaxID=666505 RepID=A0A2D9CAX2_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 7.930e-8
Identity = 42/61 (68.85%), Postives = 49/61 (80.33%), Query Frame = 1
Query:   19 LGGSCNDADLAEPFGTLDIFDVVSFIEAFNAEDPSVDFFSDGAXXXXXXXXXXXXXXSGCP 201
            L  SC+ ADLAEPFG L+ FDV  F+ AF+A+ PSVDF +D  XXXXXXXXXXXXXX+GCP
Sbjct:  997 LSNSCSTADLAEPFGVLNFFDVSEFLTAFSAQSPSVDFNNDXXXXXXXXXXXXXXXXAGCP 1057          
BLAST of mRNA_M-pyrifera_M_contig81083.18968.1 vs. uniprot
Match: A0A2E2N617_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2E2N617_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 1.080e-7
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 1
Query:   13 TELGGSCNDADLAEPFGTLDIFDVVSFIEAFNAED 117
            T +GGSCNDADLAEPFG LDI DVV+F++AF A D
Sbjct:  792 TLVGGSCNDADLAEPFGELDISDVVTFLQAFGAMD 826          
BLAST of mRNA_M-pyrifera_M_contig81083.18968.1 vs. uniprot
Match: A0A2D9C6D2_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2D9C6D2_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 4.160e-7
Identity = 42/64 (65.62%), Postives = 48/64 (75.00%), Query Frame = 1
Query:   16 ELGG--SCNDADLAEPFGTLDIFDVVSFIEAFNAEDPSVDFFSDGAXXXXXXXXXXXXXXSGCP 201
            E+ G   C+DADL EPFG LD FDV +F+ AFN  D S DF  +G+XXXXXXXXXXXXXX GCP
Sbjct:   59 EIAGPSGCSDADLVEPFGQLDFFDVSAFLTAFNNGDSSADFDGNGSXXXXXXXXXXXXXXVGCP 122          
BLAST of mRNA_M-pyrifera_M_contig81083.18968.1 vs. uniprot
Match: A0A2A4RQC2_9BACT (MAM domain-containing protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A2A4RQC2_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 5.150e-7
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = 1
Query:   16 ELGGSCNDADLAEPFGTLDIFDVVSFIEAFNAEDPSVDFFSDGAXXXXXXXXXXXXXXSGCP 201
            ++ G C+ ADLAEP+GT + FDV +F++AF+A DP+ D   DG  XXXXXXXXXXXXX GCP
Sbjct:  735 DVQGGCSGADLAEPYGTFNFFDVSAFLQAFDAGDPAADLTGDGLLXXXXXXXXXXXXXIGCP 796          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81083.18968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3M2BJ82_9BACT3.990e-1066.67Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
A0A5M4D8G0_9CYAN1.340e-967.74Cytochrome_C554 domain-containing protein n=1 Tax=... [more]
A0A3M2B333_9BACT1.350e-970.18Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A3M2B5Q2_9BACT2.470e-961.90VCBS repeat-containing protein n=1 Tax=Planctomyce... [more]
A0A7Z9UCF6_9BACT3.070e-864.52Choice-of-anchor B family protein n=1 Tax=Phycisph... [more]
A0A3M2BDU9_9BACT7.810e-868.97Ig-like domain-containing protein n=1 Tax=Planctom... [more]
A0A2D9CAX2_9BACT7.930e-868.85PA14 domain-containing protein n=2 Tax=Phycisphaer... [more]
A0A2E2N617_9BACT1.080e-774.29Uncharacterized protein n=1 Tax=Phycisphaerae bact... [more]
A0A2D9C6D2_9BACT4.160e-765.63Uncharacterized protein (Fragment) n=1 Tax=Phycisp... [more]
A0A2A4RQC2_9BACT5.150e-761.29MAM domain-containing protein n=1 Tax=bacterium Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81083contigM-pyrifera_M_contig81083:137..340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size204
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816716.5759218-CDS-M-pyrifera_M_contig81083:136..3401622816716.5759218-CDS-M-pyrifera_M_contig81083:136..340Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81083 137..340 +
1692278137.1345212-CDS-M-pyrifera_M_contig81083:136..3401692278137.1345212-CDS-M-pyrifera_M_contig81083:136..340Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81083 137..340 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81083.18968.1prot_M-pyrifera_M_contig81083.18968.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81083 137..340 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81083.18968.1

>prot_M-pyrifera_M_contig81083.18968.1 ID=prot_M-pyrifera_M_contig81083.18968.1|Name=mRNA_M-pyrifera_M_contig81083.18968.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
RVYGTELGGSCNDADLAEPFGTLDIFDVVSFIEAFNAEDPSVDFFSDGAF
DIFDVIEFIERFNSGCP*
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mRNA from alignment at M-pyrifera_M_contig81083:137..340+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81083.18968.1 ID=mRNA_M-pyrifera_M_contig81083.18968.1|Name=mRNA_M-pyrifera_M_contig81083.18968.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig81083:137..340+ (Macrocystis pyrifera P11B4 male)
CGCGTGTACGGCACAGAGCTCGGGGGAAGCTGCAACGATGCGGATCTTGC TGAGCCGTTCGGGACGCTGGATATCTTTGATGTCGTGTCGTTCATCGAAG CGTTCAACGCAGAGGACCCAAGCGTGGACTTCTTCAGCGATGGCGCGTTC GATATCTTCGATGTGATCGAGTTCATTGAGAGATTCAACAGCGGCTGTCC ATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81083:137..340+

>mRNA_M-pyrifera_M_contig81083.18968.1 ID=mRNA_M-pyrifera_M_contig81083.18968.1|Name=mRNA_M-pyrifera_M_contig81083.18968.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig81083:137..340+ (Macrocystis pyrifera P11B4 male)
CGCGTGTACGGCACAGAGCTCGGGGGAAGCTGCAACGATGCGGATCTTGC
TGAGCCGTTCGGGACGCTGGATATCTTTGATGTCGTGTCGTTCATCGAAG
CGTTCAACGCAGAGGACCCAAGCGTGGACTTCTTCAGCGATGGCGCGTTC
GATATCTTCGATGTGATCGAGTTCATTGAGAGATTCAACAGCGGCTGTCC
ATAACGCGTGTACGGCACAGAGCTCGGGGGAAGCTGCAACGATGCGGATC
TTGCTGAGCCGTTCGGGACGCTGGATATCTTTGATGTCGTGTCGTTCATC
GAAGCGTTCAACGCAGAGGACCCAAGCGTGGACTTCTTCAGCGATGGCGC
GTTCGATATCTTCGATGTGATCGAGTTCATTGAGAGATTCAACAGCGGCT
GTCCATAA
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