mRNA_M-pyrifera_M_contig81018.18950.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81018.18950.1
Unique NamemRNA_M-pyrifera_M_contig81018.18950.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig81018.18950.1 vs. uniprot
Match: A0A5A8EH03_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EH03_CAFRO)

HSP 1 Score: 107 bits (266), Expect = 3.610e-27
Identity = 53/121 (43.80%), Postives = 75/121 (61.98%), Query Frame = 1
Query:   13 VPVMLEQPDKLRSGGRTELREEAKARHPVWLIRHEGVGREWRRRVGEVEKMQGPGAALRMRVDRARLAQHQRAPGLPSSFVGLDTFLGREYAIDFEDYLDLPEDAEEAPTVSVHEIFEAKL 375
            +P +    DKL  GG   +R E  A+HP+  ++     ++W   +   E++ GPG A+RMR+DRA L+Q QRAPGL S FVGLDT LGR+  + FED LD+PE   + P  +VH+  + KL
Sbjct:   19 MPALTHPTDKLSRGGLRSMRHEMAAKHPIEAMQEAWHTQKWGNELHHAERVFGPGTAMRMRMDRAILSQFQRAPGLASDFVGLDTILGRDITVGFEDILDVPETRTDTPVETVHDALDRKL 139          
BLAST of mRNA_M-pyrifera_M_contig81018.18950.1 vs. uniprot
Match: A0A835YZL3_9STRA (Proteasome maturation factor UMP1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZL3_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 3.980e-18
Identity = 48/124 (38.71%), Postives = 73/124 (58.87%), Query Frame = 1
Query:    1 DVRGVPVMLEQPDKLRSGGRTELREEAKARHPVWLIRHEGVGREWRRRVGEVEKMQGPGAALRMRVDRARLAQHQRAPGLPSSFVGLDTFLGREYAIDFEDYLDLPEDAEEAPTVSVHEIFEAK 372
            + + +PV  +  D LR G  T +++EA+  HPV  I+   V  E+  ++   +++ G G A+R+R + A L+Q QR PGL SS VGL+T LG +  +DFED++  PE+    P   VHE  E K
Sbjct:    2 EQKSLPVARQPADILRYG-LTSMQQEAQDTHPVEAIQRSRVRGEFELKMDMAQRVYGSGFAMRLRTEAAALSQAQRLPGLLSSRVGLETVLGNDETLDFEDFMGTPENQPGEPKFKVHEAMEIK 124          
BLAST of mRNA_M-pyrifera_M_contig81018.18950.1 vs. uniprot
Match: W7TNF3_9STRA (Proteasome maturation factor ump1 family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNF3_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.760e-17
Identity = 47/122 (38.52%), Postives = 75/122 (61.48%), Query Frame = 1
Query:   13 VPVMLEQPDKLRSGGRTE-LREEAKARHPVWLIRHEGVGREWRRRVGEVEKMQGPGAALRMRVDRARLAQHQRAPGLPSSFVGLDTFLGREYAIDFEDYLDLPEDAEEAPTVSVHEIFEAKL 375
            +P++ E  D++R G +    R EA A HPV   +      E++ R+  + ++ G  AA+R++ +R  L++  RAPGLPSS VGL+T LG +  I+FED L+ P++  + P + VHE  EA+L
Sbjct:    9 LPLLKEPVDQMREGLKAGGFRSEAVAPHPVQAFQATRKEAEFQARLDTIARLYGIAAAMRLKTERDILSRVCRAPGLPSSMVGLETVLGTDETIEFEDVLNDPQERPDMPLIPVHERMEARL 130          
BLAST of mRNA_M-pyrifera_M_contig81018.18950.1 vs. uniprot
Match: D7FKB2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKB2_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 2.180e-15
Identity = 43/120 (35.83%), Postives = 67/120 (55.83%), Query Frame = 1
Query:    7 RGVPVMLEQPDKLRSGGRTELREEAKARHPVWLIRHEGVGREWRRRVGEVEKMQGPGAALRMRVDRARLAQHQRAPGLPSSFVGLDTFLGREYAIDFEDYLDLPEDAEEAPTVSVHEIFE 366
            + +P+     D++R G  +   ++A A HP+  +    +  E+  ++    K+ G    +RM+ + A L+Q Q  PGLPSS +GL+T LGR+  ++FEDYLD P D  E P   VHE  E
Sbjct:    7 KAMPMARAPHDQMRFGF-SSFAQDASAGHPLEAMNKARIPNEFDFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAME 125          
BLAST of mRNA_M-pyrifera_M_contig81018.18950.1 vs. uniprot
Match: A0A7S2S4B2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S4B2_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 2.690e-12
Identity = 44/121 (36.36%), Postives = 67/121 (55.37%), Query Frame = 1
Query:   13 VPVMLEQPDKLRSGGRTELREEAKARHPVWLIRHEGVGREWRRRVGEVEKMQGPGAALRMRVDRARLAQHQRAPGLPSSFVGLDTFLGREYAIDFEDYLDLPEDAEEAPTVSVHEIFEAKL 375
            +PV+    D++R G +T L  E++  HP  L     V  ++ ++V  V +M G  AA+R++ +R    Q QR PGLPSSF+ L T LG +  + FED L+ P +A      S+H+  E K 
Sbjct:    7 IPVLQGPRDQMREGLQTTLAAESRQGHP--LETRLAVD-DFSQKVDMVRRMYGSAAAMRLQTERLATEQIQRLPGLPSSFLALQTVLGEDCTLQFEDVLNDPFEAPVETKASLHDELEFKF 124          
BLAST of mRNA_M-pyrifera_M_contig81018.18950.1 vs. uniprot
Match: A0A7S2TZU6_9EUKA (Hypothetical protein n=2 Tax=Lotharella TaxID=74819 RepID=A0A7S2TZU6_9EUKA)

HSP 1 Score: 67.4 bits (163), Expect = 9.710e-12
Identity = 45/130 (34.62%), Postives = 72/130 (55.38%), Query Frame = 1
Query:    1 DVRGVPVMLEQPDKLRSGGRTELREEAKARHPVWLIRHEGVGREWRRRVGEVEKMQGPGAALRMRVDRARLAQHQR--APGLPSSFVGLDTFLGREYAIDFEDYLDLPEDAEEAPTVSVHEIFEAKLSAK 384
            D + +P++ E  D LR+    +   +  A HPV LI+ E        ++  + K+ G    +RM++D+  L+QH+R   PG+  SFVGL+T LG +  I+FEDYL+ PE +E+   V +H   E  +  K
Sbjct:   10 DRKSIPILREPLDTLRT---KKTSVDNSASHPVQLIQEEHNVNIAEGKMRMLAKIHGVHVPMRMKMDQTILSQHKRLHVPGMKPSFVGLETMLGMDETIEFEDYLNDPEFSEKQ--VDIHTEMEKSMFPK 134          
BLAST of mRNA_M-pyrifera_M_contig81018.18950.1 vs. uniprot
Match: A0A7S2WII9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WII9_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 4.110e-9
Identity = 38/99 (38.38%), Postives = 57/99 (57.58%), Query Frame = 1
Query:   13 VPVMLEQPDKLRSGGRTELREEAKARHPVWLIRHEGVGREWRRRVGEVEKMQGPGAALRMRVDRARLAQHQRAPGLPSSFVGLDTFLGREYAIDFEDYL 309
            +PV+    D++R G +T L  E++  HP  L     V  ++ ++V  V +M G  AA+R++ +R    Q QR PGLPSSF+ L T LG +  + FED L
Sbjct:    7 IPVLQGPRDQMREGLQTTLAAESRQGHP--LETRLAVD-DFSQKVDMVRRMYGSAAAMRLQTERLATEQIQRLPGLPSSFLALQTVLGEDCTLQFEDVL 102          
BLAST of mRNA_M-pyrifera_M_contig81018.18950.1 vs. uniprot
Match: A0A7S0CMP6_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CMP6_9EUKA)

HSP 1 Score: 59.7 bits (143), Expect = 7.310e-9
Identity = 45/127 (35.43%), Postives = 70/127 (55.12%), Query Frame = 1
Query:    1 DVRGVPVMLEQPDKLRSGGRTELREEAKARHPVWLIRHEGVGREWRRRVGEVEKMQGPGAALRMRVDRARLAQHQRAP--GLPSSFVGLDTFLGREYAIDFEDYLDLPEDAEEAPTVSVHEIFEAKL 375
            D + VP++    D LR+  +T     A++ HPV  I+ E        ++  + K+ G    +RM++D+  LAQH+R P  G+ SSFVGL+T LG +  I+FED+L+  E  E+   + VH   E K 
Sbjct:    4 DGKSVPLLRTPIDVLRT--KTNTVNSARS-HPVHAIQEEHNVNIREGKMRMLAKIHGVHVPMRMKMDQTILAQHRRLPLPGMKSSFVGLETMLGVDENIEFEDFLNKQEFCEKE--IDVHTELEKKF 125          
BLAST of mRNA_M-pyrifera_M_contig81018.18950.1 vs. uniprot
Match: A0A8J2A855_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J2A855_9DINO)

HSP 1 Score: 57.4 bits (137), Expect = 6.920e-8
Identity = 34/76 (44.74%), Postives = 47/76 (61.84%), Query Frame = 1
Query:  169 GPGAALRMRVDRARLAQHQRAPGLPSSFVGLDTFLGREYAIDFEDYLDLPEDAEEAPTV----SVHEIFEAKLSAK 384
            G    +R R++R  LAQ+QR PGLPSSFVGL++ L  +  I+FEDYL+  E     P V    ++H++ E KL  K
Sbjct:   63 GSHVPMRNRIERNILAQYQRLPGLPSSFVGLESHLDIDETIEFEDYLNRKETCP-MPEVGFNHTMHDVLEKKLEMK 137          
BLAST of mRNA_M-pyrifera_M_contig81018.18950.1 vs. uniprot
Match: A0A7S3I146_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Favella ehrenbergii TaxID=182087 RepID=A0A7S3I146_9SPIT)

HSP 1 Score: 57.0 bits (136), Expect = 8.980e-8
Identity = 31/81 (38.27%), Postives = 50/81 (61.73%), Query Frame = 1
Query:   91 HPVWLIRHEGVGREWRRRVGEVEKMQGPGAALRMRVDRARLAQHQRAPGLPSSFVGLDTFLGREYAIDFEDYLDLPEDAEE 333
            HPV  I+ + +  +   +   +  + G    +R++++   L+Q  R PG+ SS VGL+T LGR+  IDFEDYL LPE++E+
Sbjct:    9 HPVETIQKDWLRNQLENKHYVMGNVYGTHLPMRLKMETNILSQVSRLPGIRSSHVGLNTILGRDETIDFEDYLGLPENSEQ 89          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81018.18950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8EH03_CAFRO3.610e-2743.80Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A835YZL3_9STRA3.980e-1838.71Proteasome maturation factor UMP1 n=1 Tax=Tribonem... [more]
W7TNF3_9STRA1.760e-1738.52Proteasome maturation factor ump1 family protein n... [more]
D7FKB2_ECTSI2.180e-1535.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2S4B2_9STRA2.690e-1236.36Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2TZU6_9EUKA9.710e-1234.62Hypothetical protein n=2 Tax=Lotharella TaxID=7481... [more]
A0A7S2WII9_9STRA4.110e-938.38Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0CMP6_9EUKA7.310e-935.43Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A8J2A855_9DINO6.920e-844.74Hypothetical protein n=1 Tax=Amoebophrya sp. A25 T... [more]
A0A7S3I146_9SPIT8.980e-838.27Hypothetical protein (Fragment) n=1 Tax=Favella eh... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81018contigM-pyrifera_M_contig81018:77..463 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue1e-12
Seed eggNOG ortholog157072.XP_008864603.1
Preferred namePOMP
KEGG koko:K11599
KEGG Pathwayko03050,map03050
Hectar predicted targeting categoryother localisation
GOsGO:0000502,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010498,GO:0010604,GO:0016020,GO:0016043,GO:0016604,GO:0016607,GO:0019222,GO:0019538,GO:0019941,GO:0022607,GO:0030162,GO:0030163,GO:0031090,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032991,GO:0033554,GO:0034622,GO:0042176,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043248,GO:0043632,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045732,GO:0045862,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051603,GO:0051716,GO:0060255,GO:0061136,GO:0065003,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1902494,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1905368,GO:1905369,GO:2000058,GO:2000060
EggNOG free text desc.proteasome assembly
EggNOG OGsKOG3061@1,KOG3061@2759
Ec32 ortholog descriptionProteasome maturation factor UMP1
Ec32 orthologEc-05_005550.1
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03051
Exons1
Model size387
Cds size366
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816715.4888277-CDS-M-pyrifera_M_contig81018:76..4421622816715.4888277-CDS-M-pyrifera_M_contig81018:76..442Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81018 77..442 -
1692278136.5148087-CDS-M-pyrifera_M_contig81018:76..4421692278136.5148087-CDS-M-pyrifera_M_contig81018:76..442Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81018 77..442 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816715.5034049-UTR-M-pyrifera_M_contig81018:442..4631622816715.5034049-UTR-M-pyrifera_M_contig81018:442..463Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig81018 443..463 -
1692278136.528551-UTR-M-pyrifera_M_contig81018:442..4631692278136.528551-UTR-M-pyrifera_M_contig81018:442..463Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig81018 443..463 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81018.18950.1prot_M-pyrifera_M_contig81018.18950.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81018 77..442 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81018.18950.1

>prot_M-pyrifera_M_contig81018.18950.1 ID=prot_M-pyrifera_M_contig81018.18950.1|Name=mRNA_M-pyrifera_M_contig81018.18950.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
MLEQPDKLRSGGRTELREEAKARHPVWLIRHEGVGREWRRRVGEVEKMQG
PGAALRMRVDRARLAQHQRAPGLPSSFVGLDTFLGREYAIDFEDYLDLPE
DAEEAPTVSVHEIFEAKLSAK*
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mRNA from alignment at M-pyrifera_M_contig81018:77..463-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81018.18950.1 ID=mRNA_M-pyrifera_M_contig81018.18950.1|Name=mRNA_M-pyrifera_M_contig81018.18950.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=387bp|location=Sequence derived from alignment at M-pyrifera_M_contig81018:77..463- (Macrocystis pyrifera P11B4 male)
GATGTTCGTGGCGTTCCTGTGATGCTGGAGCAGCCTGACAAGTTGCGGAG TGGCGGTCGTACCGAGCTTCGCGAGGAGGCCAAGGCGCGGCACCCCGTGT GGTTGATTCGGCACGAGGGGGTCGGGCGGGAGTGGCGCCGTCGCGTGGGG GAGGTGGAGAAGATGCAGGGGCCGGGAGCCGCTCTGCGGATGCGGGTGGA CCGGGCGAGGCTGGCGCAGCACCAGCGCGCGCCCGGCCTGCCTTCCTCCT TCGTGGGCCTCGACACCTTCCTCGGCAGGGAGTACGCCATCGACTTCGAA GACTACCTCGACCTCCCAGAAGACGCAGAAGAAGCGCCAACAGTGTCCGT GCACGAAATCTTTGAAGCCAAACTCAGTGCCAAGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81018:77..463-

>mRNA_M-pyrifera_M_contig81018.18950.1 ID=mRNA_M-pyrifera_M_contig81018.18950.1|Name=mRNA_M-pyrifera_M_contig81018.18950.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig81018:77..463- (Macrocystis pyrifera P11B4 male)
ATGCTGGAGCAGCCTGACAAGTTGCGGAGTGGCGGTCGTACCGAGCTTCG
CGAGGAGGCCAAGGCGCGGCACCCCGTGTGGTTGATTCGGCACGAGGGGG
TCGGGCGGGAGTGGCGCCGTCGCGTGGGGGAGGTGGAGAAGATGCAGGGG
CCGGGAGCCGCTCTGCGGATGCGGGTGGACCGGGCGAGGCTGGCGCAGCA
CCAGCGCGCGCCCGGCCTGCCTTCCTCCTTCGTGGGCCTCGACACCTTCC
TCGGCAGGGAGTACGCCATCGACTTCGAAGACTACCTCGACCTCCCAGAA
GACGCAGAAGAAGCGCCAACAGTGTCCGTGCACGAAATCTTTGAAGCCAA
ACTCAGTGCCAAGTAAATGCTGGAGCAGCCTGACAAGTTGCGGAGTGGCG
GTCGTACCGAGCTTCGCGAGGAGGCCAAGGCGCGGCACCCCGTGTGGTTG
ATTCGGCACGAGGGGGTCGGGCGGGAGTGGCGCCGTCGCGTGGGGGAGGT
GGAGAAGATGCAGGGGCCGGGAGCCGCTCTGCGGATGCGGGTGGACCGGG
CGAGGCTGGCGCAGCACCAGCGCGCGCCCGGCCTGCCTTCCTCCTTCGTG
GGCCTCGACACCTTCCTCGGCAGGGAGTACGCCATCGACTTCGAAGACTA
CCTCGACCTCCCAGAAGACGCAGAAGAAGCGCCAACAGTGTCCGTGCACG
AAATCTTTGAAGCCAAACTCAGTGCCAAGTAA
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