mRNA_M-pyrifera_M_contig80800.18907.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80800.18907.1
Unique NamemRNA_M-pyrifera_M_contig80800.18907.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig80800.18907.1 vs. uniprot
Match: A0A517RI04_9PLAN (Site-specific tyrosine recombinase XerC n=2 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RI04_9PLAN)

HSP 1 Score: 201 bits (511), Expect = 4.660e-61
Identity = 104/219 (47.49%), Postives = 146/219 (66.67%), Query Frame = 1
Query:    1 QTWTQIERRIRRGGLTEKQKKELWASLFLDEDQISELLKYVKKNAAHPFIYPMFVFTAYAGTRRSEVLRSDIEDFDFDTNQILIRERKRRKDMQQTFRFVPLHPKLKRVMDAWFDEHPGGPYTIAAPLKMARR-PERTEFDQMGPNVAHHHFKRTLKDSKWAVIRGFHVLRHSFGSNLARSGKVSRDTIGEWMGHSTEEMKTLYQHLFPQDGQTQISVL 654
            QTW +IER+I+  G++E + ++LW  L+L  +QI +LLK V++ A+ PF+YPMF F AY G RRSE++RS + D DF+   I IRE+KR +    T R +PL   L+RV+  WF  HPGGP+T    LK+AR   +RTE   + P+ A HHFK TL +S+W V+RG+H LRHSF SN A  G + +  I EW+GH+TE M+  Y+HLFP   +  + +L
Sbjct:   59 QTWEEIERQIQ-NGVSELEHEDLWECLYLSMEQIEKLLKDVERLASFPFVYPMFCFAAYTGARRSEMIRSQVRDIDFENKVITIREKKRVRGKLSTRR-IPLSQPLERVLRLWFKNHPGGPHTFCHHLKVARSITKRTEPIALTPDEAAHHFKHTLSESEWKVVRGWHCLRHSFISNCASKG-IDQRMIDEWVGHTTEAMRRRYRHLFPSSQKDAMQML 274          
BLAST of mRNA_M-pyrifera_M_contig80800.18907.1 vs. uniprot
Match: A0A517VFD8_9PLAN (Site-specific tyrosine recombinase XerC n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VFD8_9PLAN)

HSP 1 Score: 202 bits (514), Expect = 8.210e-60
Identity = 106/215 (49.30%), Postives = 142/215 (66.05%), Query Frame = 1
Query:   13 QIERRIRRGGLTEKQKKELWASLFLDEDQISELLKYVKKNAAHPFIYPMFVFTAYAGTRRSEVLRSDIEDFDFDTNQILIRERKRRKDMQQTFRFVPLHPKLKRVMDAWFDEHPGGPYTIAA-PLKMARRPERTEFDQMGPNVAHHHFKRTLKDSKWAVIRGFHVLRHSFGSNLARSGKVSRDTIGEWMGHSTEEMKTLYQHLFPQDGQTQISVL 654
            +I+R+I R GLTE+Q K LW SLFL +++I ++L  ++      FIYPMFVF A+ G RRSE+LRS IEDFDFDT  + IRE+K+ K+   TFR V + P L  +M  WF+ HPGG +TI   P +++   +  E   M  + A +HFK TL    W+ IRGFHV RHSF SNLA +G V +  I EWMGH TEEM+  Y+HLFPQ  ++ I ++
Sbjct:  201 EIDRKISRNGLTEEQVKRLWESLFLKKEEICKILDGIRSLNTFSFIYPMFVFVAHTGARRSEILRSRIEDFDFDTKIVKIREKKKVKNRNITFRHVDMTPLLYDIMKCWFENHPGGQFTICDDPEEISAGLDEDELG-MSKHKAQYHFKETLARIDWSKIRGFHVFRHSFASNLASAG-VDQRVIDEWMGHQTEEMRRRYRHLFPQQRRSAIELV 413          
BLAST of mRNA_M-pyrifera_M_contig80800.18907.1 vs. uniprot
Match: A0A847GTE6_9BACT (Site-specific integrase n=1 Tax=Candidatus Anammoximicrobium sp. TaxID=2699742 RepID=A0A847GTE6_9BACT)

HSP 1 Score: 199 bits (506), Expect = 3.240e-59
Identity = 107/216 (49.54%), Postives = 136/216 (62.96%), Query Frame = 1
Query:    1 QTWTQIERRIRRGGLTEKQKKELWASLFLDEDQISELLKYVKKNAAHPFIYPMFVFTAYAGTRRSEVLRSDIEDFDFDTNQILIRERKRRKDMQQTFRFVPLHPKLKRVMDAWFDEHPGGPYTIAAPLKMAR-RPERTEFDQMGPNVAHHHFKRTLKDSKWAVIRGFHVLRHSFGSNLARSGKVSRDTIGEWMGHSTEEMKTLYQHLFPQDGQTQI 645
            QTW +IER+I RGGLTE ++ ELW  LFL   +I ELL +VK++   PF+YPMFVF A+ G RRSE++RS+I+DFDF+   +LIRE+KR +    T R VPL P L   M  WF  HPGG +T     ++ R R  R     +  + AH HFKRTL  SKW  +RG+HV RHSF SN A  G + +  I  W+GH TEEM   Y+HL P   Q  I
Sbjct:  142 QTWEEIERKIARGGLTETEQTELWDCLFLTLPEIEELLGFVKQSGRWPFVYPMFVFAAHTGARRSEMVRSEIDDFDFEGGTVLIREKKRVRGKLSTRR-VPLSPLLVETMRHWFANHPGGRHTFCLDCRLPRGRKTREIGTPITRDEAHDHFKRTLAGSKWDKLRGWHVFRHSFCSNCAAKG-IDQRIINAWVGHQTEEMVRRYRHLIPNQQQEAI 355          
BLAST of mRNA_M-pyrifera_M_contig80800.18907.1 vs. uniprot
Match: A0A5B9W9U0_9BACT (Tyrosine recombinase n=1 Tax=Aquisphaera giovannonii TaxID=406548 RepID=A0A5B9W9U0_9BACT)

HSP 1 Score: 199 bits (506), Expect = 1.110e-58
Identity = 104/216 (48.15%), Postives = 139/216 (64.35%), Query Frame = 1
Query:    1 QTWTQIERRIRRGGLTEKQKKELWASLFLDEDQISELLKYVKKNAAHPFIYPMFVFTAYAGTRRSEVLRSDIEDFDFDTNQILIRERKRRKDMQQTFRFVPLHPKLKRVMDAWFDEHPGGPYTIAAPLKMAR-RPERTEFDQMGPNVAHHHFKRTLKDSKWAVIRGFHVLRHSFGSNLARSGKVSRDTIGEWMGHSTEEMKTLYQHLFPQDGQTQI 645
            QT  +IE +++RGGL + +K+ELW SLFL   +++E L YV++ A H +IYPMF F A+ G RRSE+LRS I DFDF    +LIRE+KR K  ++T R VPL   L +VM  WFD HPGG Y+I  PLK+ + R  R ++  +  + ++HHF  T+  SKW VI G+H  RHSF SN A  G V +  I  W+GH TEEM   Y HL P   +T +
Sbjct:  195 QTRAEIEEQLKRGGLKDDEKRELWNSLFLTLPEVAEFLGYVQETARHDWIYPMFCFAAHTGARRSEILRSRIADFDFQAKSVLIREKKRVKG-RRTTRRVPLSAFLAKVMREWFDAHPGGVYSICQPLKIFKSRKSRADYVPVTVDESNHHFNATIAGSKWEVIPGWHCFRHSFASNCAARG-VDQRLINAWLGHQTEEMARRYAHLIPNVAKTAL 408          
BLAST of mRNA_M-pyrifera_M_contig80800.18907.1 vs. uniprot
Match: UPI00024724ED (tyrosine-type recombinase/integrase n=1 Tax=Singulisphaera acidiphila TaxID=466153 RepID=UPI00024724ED)

HSP 1 Score: 192 bits (489), Expect = 1.150e-58
Identity = 99/217 (45.62%), Postives = 134/217 (61.75%), Query Frame = 1
Query:    4 TWTQIERRIRRGGLTEKQKKELWASLFLDEDQISELLKYVKKNAAHPFIYPMFVFTAYAGTRRSEVLRSDIEDFDFDTNQILIRERKRRKDMQQTFRFVPLHPKLKRVMDAWFDEHPGGPYTIAAPLKMARRPERTEFDQMGPNVAHHHFKRTLKDSKWAVIRGFHVLRHSFGSNLARSGKVSRDTIGEWMGHSTEEMKTLYQHLFPQDGQTQISVL 654
            +W QIER I RGGLTE + KELW  L+LD D++ E L++V++     ++YPM    AY G RRSE+ RS I D+ FD   + IR++KR K    T+R VP+H KL  V  AWF +HPGG +             R + +++  + A +H  + +K SKW V+RGFHVLRHSF SNLA + K  R  I  WMGHST+ ++  YQHL P+D Q  I +L
Sbjct:    2 SWPQIEREIARGGLTEAETKELWDCLWLDRDEVREFLEHVRQAGGPTYLYPMVCMAAYTGARRSELCRSRISDWRFDDKTVKIRQKKRDKKKMFTYRDVPIHSKLAEVATAWFADHPGGQFAFC----------RADREEVSWDTATYHLNQAIKGSKWEVVRGFHVLRHSFASNLAAANKDQRK-IDRWMGHSTD-IRWRYQHLRPEDQQEDIGIL 206          
BLAST of mRNA_M-pyrifera_M_contig80800.18907.1 vs. uniprot
Match: A0A7C4UW41_9BACT (Site-specific integrase n=1 Tax=Gemmataceae bacterium TaxID=2052164 RepID=A0A7C4UW41_9BACT)

HSP 1 Score: 193 bits (490), Expect = 3.180e-56
Identity = 104/219 (47.49%), Postives = 139/219 (63.47%), Query Frame = 1
Query:    1 QTWTQIERRIRRGGLTEKQKKELWASLFLDEDQISELLKYVKKNAAHPFIYPMFVFTAYAGTRRSEVLRSDIEDFDFDTNQILIRERKRRKDMQQTFRFVPLHPKLKRVMDAWFDEHPGGPYTIAAPLKMARRPERTEFDQMGPNVAHHHFKRTLKDSKWA-VIRGFHVLRHSFGSNLARSGKVSRDTIGEWMGHSTEEMKTLYQHLFPQDGQTQISVL 654
            QT  +IER+I RGGL+ +Q   LW  L+L   ++  +L +VKK AA PF+YPMF FTAY G RRSE+LRS IEDFDFD   + IRE+K+ K+ + TFR VP+   L  +M AWF +HPGG  TI          ER   + + P +AH  F+  +K S W   +RG+HV RHSF SN A  G + +  I +WMGH+TEEM+  YQHLFP D    ++++
Sbjct:  212 QTRDEIERQITRGGLSPEQIAVLWECLYLRVQEVEAILSHVKK-AAQPFLYPMFCFTAYTGARRSEILRSQIEDFDFDRRMVTIREKKKSKEKKLTFRQVPISNVLAAIMKAWFAKHPGGNLTIC---------ERAS-ESVSPQMAHFWFQEAIKGSGWENKMRGWHVFRHSFASNCASKG-IDQRMIDKWMGHTTEEMRKRYQHLFPDDQHKALALV 418          
BLAST of mRNA_M-pyrifera_M_contig80800.18907.1 vs. uniprot
Match: UPI0013ED4C0B (site-specific integrase n=1 Tax=Paludisphaera soli TaxID=2712865 RepID=UPI0013ED4C0B)

HSP 1 Score: 192 bits (487), Expect = 7.890e-56
Identity = 103/209 (49.28%), Postives = 134/209 (64.11%), Query Frame = 1
Query:    1 QTWTQIERRIRRGGLTEKQKKELWASLFLDEDQISELLKYVKKNAAHPFIYPMFVFTAYAGTRRSEVLRSDIEDFDFDTNQILIRERKRRKDMQQTFRFVPLHPKLKRVMDAWFDEHPGGPYTIAAPLKMAR-RPERTEFDQMGPNVAHHHFKRTLKDSKWAVIRGFHVLRHSFGSNLARSGKVSRDTIGEWMGHSTEEMKTLYQHLFP 624
            QT  +IER+I RG L  + + +LWA L+L   ++ E+L++V+  A H FIYPMFVF A+ G RRSE+LRS I DFDF+    +IRE+KR K  + T R VPL P+L  VM  WF  HPGG YTI+        R  R E   +  + ++HHF R L +S+W+VIRG+HV RHSF SN A  G V +  I  WMGH TEEM+  Y+HL P
Sbjct:  195 QTRAEIERQIERGRLAPRDQDDLWACLYLTLPEVEEVLEHVRSTARHAFIYPMFVFAAHTGARRSEILRSRIADFDFEAGTAVIREKKRVKG-RWTTRRVPLSPRLAGVMRDWFAAHPGGAYTISREAGSGHGREGRPEGGTLTRDESNHHFHRALAESRWSVIRGWHVFRHSFASNCAARG-VDQRLIDAWMGHQTEEMRRRYRHLSP 401          
BLAST of mRNA_M-pyrifera_M_contig80800.18907.1 vs. uniprot
Match: A0A847H1W9_9BACT (Site-specific integrase n=1 Tax=Candidatus Anammoximicrobium sp. TaxID=2699742 RepID=A0A847H1W9_9BACT)

HSP 1 Score: 192 bits (488), Expect = 8.160e-56
Identity = 104/219 (47.49%), Postives = 140/219 (63.93%), Query Frame = 1
Query:    1 QTWTQIERRIRRGGLTEKQKKELWASLFLDEDQISELLKYVKKNAAHPFIYPMFVFTAYAGTRRSEVLRSDIEDFDFDTNQILIRERKRRKDMQQTFRFVPLHPKLKRVMDAWFDEHPGGPYTIAAPLKMAR-RPERTEFDQMGPNVAHHHFKRTLKDSKWAVIRGFHVLRHSFGSNLARSGKVSRDTIGEWMGHSTEEMKTLYQHLFPQDGQTQISVL 654
            QTW +IER+I RGGLT+ +  +LW  LFL   +I ELL++V+ +A  PFIYPM +F A+ G RRSE++RS+I+D DFD   +LIRE+KR +    T R VPL P L +V+  W   HPGG +T A   ++ R R  R+   Q+  + AH HFKRTL  S+W  IRG+H+ RHSF SN A  G + +  I  W+GH TEEM   Y+HL P   Q  I ++
Sbjct:  197 QTWQEIERKISRGGLTKAEVADLWDCLFLTLPEIEELLEFVRAHAKQPFIYPMVMFAAHTGARRSEMVRSEIDDIDFDGATVLIREKKRIRGKLSTRR-VPLSPFLVQVLRDWLKIHPGGRHTFALGAEVPRSRKTRSIGTQLTRDEAHDHFKRTLLGSRWERIRGWHIFRHSFCSNCAAKG-IDQRIINAWVGHQTEEMVRRYRHLIPNQQQEAIRLV 413          
BLAST of mRNA_M-pyrifera_M_contig80800.18907.1 vs. uniprot
Match: A0A2G2KQR5_9BACT (Recombinase XerD n=1 Tax=Blastopirellula sp. TaxID=2024826 RepID=A0A2G2KQR5_9BACT)

HSP 1 Score: 191 bits (485), Expect = 1.490e-55
Identity = 102/219 (46.58%), Postives = 140/219 (63.93%), Query Frame = 1
Query:    1 QTWTQIERRIRRGGLTEKQKKELWASLFLDEDQISELLKYVKKNAAHPFIYPMFVFTAYAGTRRSEVLRSDIEDFDFDTNQILIRERKRRKDMQQTFRFVPLHPKLKRVMDAWFDEHPGGPYTIAAPLKMAR-RPERTEFDQMGPNVAHHHFKRTLKDSKWAVIRGFHVLRHSFGSNLARSGKVSRDTIGEWMGHSTEEMKTLYQHLFPQDGQTQISVL 654
            QTW +IER+++  G++ +++  LW  L+L   QI E L   K+ AA PFI+PM  F AY G RRSE++RS I D DF++  I IRE+KR +    T R VPL   L RV+  WF  HPGGP+T    +K+ R + +RTE   +  + A HHFK+T+ +SKW VIRG+H LRHSF SN A  G + +  I EW+GH+TE M+  Y+HLFP   Q  + +L
Sbjct:  196 QTWEEIERQVQ-NGISGEEQANLWNCLYLSMPQIEEFLADAKQTAAFPFIHPMVCFAAYTGARRSEIMRSHIGDIDFESKNITIREKKRIRGKLSTRR-VPLSAPLARVLRQWFKIHPGGPHTFCQSMKIERPKTKRTEPTPITRDEAAHHFKKTMSNSKWEVIRGWHCLRHSFISNCACKG-IDQRMIDEWVGHTTESMRRRYRHLFPSSQQEAMELL 411          
BLAST of mRNA_M-pyrifera_M_contig80800.18907.1 vs. uniprot
Match: A0A518GYS4_9BACT (Site-specific tyrosine recombinase XerC n=1 Tax=Tautonia plasticadhaerens TaxID=2527974 RepID=A0A518GYS4_9BACT)

HSP 1 Score: 191 bits (484), Expect = 2.260e-55
Identity = 100/217 (46.08%), Postives = 134/217 (61.75%), Query Frame = 1
Query:    4 TWTQIERRIRRGGLTEKQKKELWASLFLDEDQISELLKYVKKNAAHPFIYPMFVFTAYAGTRRSEVLRSDIEDFDFDTNQILIRERKRRKDMQQTFRFVPLHPKLKRVMDAWFDEHPGGPYTIAAPLKMARRPERTEFDQMGPNVAHHHFKRTLKDSKWAVIRGFHVLRHSFGSNLARSGKVSRDTIGEWMGHSTEEMKTLYQHLFPQDGQTQISVL 654
            T  QIER+++RGGLTE++++E W  L+L  ++I E+L  V+ NA  PFIYPMF F A  G RR E+LRS I+DFDF+   + I+  K R+  Q   R V +HP+L+ VM  WF  HPGG +T+           + +   +  + A+HHF + LK SKW VI+GFHV RHSF S LA  G V +  I +++GH TEEMK  YQHL P  G   I  L
Sbjct:  208 TSEQIERKLKRGGLTEQERREQWDCLYLTGEEIEEVLDLVQANATAPFIYPMFAFVALTGARRGELLRSQIDDFDFEAGSVTIQGTKGRQRTQIVAREVDIHPRLRDVMTGWFAHHPGGQHTLC----------KADGSPLTVHEANHHFDQPLKGSKWQVIKGFHVFRHSFASILASRG-VDQRYIDKYLGHQTEEMKKRYQHLHPGKGGKPIDAL 413          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80800.18907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A517RI04_9PLAN4.660e-6147.49Site-specific tyrosine recombinase XerC n=2 Tax=Gi... [more]
A0A517VFD8_9PLAN8.210e-6049.30Site-specific tyrosine recombinase XerC n=1 Tax=Gi... [more]
A0A847GTE6_9BACT3.240e-5949.54Site-specific integrase n=1 Tax=Candidatus Anammox... [more]
A0A5B9W9U0_9BACT1.110e-5848.15Tyrosine recombinase n=1 Tax=Aquisphaera giovannon... [more]
UPI00024724ED1.150e-5845.62tyrosine-type recombinase/integrase n=1 Tax=Singul... [more]
A0A7C4UW41_9BACT3.180e-5647.49Site-specific integrase n=1 Tax=Gemmataceae bacter... [more]
UPI0013ED4C0B7.890e-5649.28site-specific integrase n=1 Tax=Paludisphaera soli... [more]
A0A847H1W9_9BACT8.160e-5647.49Site-specific integrase n=1 Tax=Candidatus Anammox... [more]
A0A2G2KQR5_9BACT1.490e-5546.58Recombinase XerD n=1 Tax=Blastopirellula sp. TaxID... [more]
A0A518GYS4_9BACT2.260e-5546.08Site-specific tyrosine recombinase XerC n=1 Tax=Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80800contigM-pyrifera_M_contig80800:44..703 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score171.0
Seed ortholog evalue6.1e-40
Seed eggNOG ortholog1123508.JH636463_gene267
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Phage integrase family
EggNOG OGs2J1DN@203682,COG0582@1,COG0582@2
COG Functional cat.L
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size660
Cds size660
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816712.9192939-CDS-M-pyrifera_M_contig80800:43..7031622816712.9192939-CDS-M-pyrifera_M_contig80800:43..703Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80800 44..703 +
1692278135.2735784-CDS-M-pyrifera_M_contig80800:43..7031692278135.2735784-CDS-M-pyrifera_M_contig80800:43..703Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80800 44..703 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80800.18907.1prot_M-pyrifera_M_contig80800.18907.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80800 44..703 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80800.18907.1

>prot_M-pyrifera_M_contig80800.18907.1 ID=prot_M-pyrifera_M_contig80800.18907.1|Name=mRNA_M-pyrifera_M_contig80800.18907.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=220bp
QTWTQIERRIRRGGLTEKQKKELWASLFLDEDQISELLKYVKKNAAHPFI
YPMFVFTAYAGTRRSEVLRSDIEDFDFDTNQILIRERKRRKDMQQTFRFV
PLHPKLKRVMDAWFDEHPGGPYTIAAPLKMARRPERTEFDQMGPNVAHHH
FKRTLKDSKWAVIRGFHVLRHSFGSNLARSGKVSRDTIGEWMGHSTEEMK
TLYQHLFPQDGQTQISVLK*
back to top

mRNA from alignment at M-pyrifera_M_contig80800:44..703+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80800.18907.1 ID=mRNA_M-pyrifera_M_contig80800.18907.1|Name=mRNA_M-pyrifera_M_contig80800.18907.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig80800:44..703+ (Macrocystis pyrifera P11B4 male)
CAAACCTGGACTCAGATTGAACGTAGAATCAGACGCGGAGGTTTGACGGA GAAGCAGAAGAAGGAGTTGTGGGCCAGCCTGTTTCTCGATGAAGATCAAA TTTCAGAACTGCTCAAGTACGTCAAGAAGAACGCGGCCCACCCTTTCATC TATCCGATGTTTGTCTTCACGGCCTATGCCGGGACTCGCCGGAGTGAGGT TCTCCGTTCCGACATTGAAGACTTTGATTTCGACACCAATCAAATTCTCA TCCGGGAGAGAAAGCGACGGAAGGATATGCAGCAGACCTTCCGTTTCGTC CCTCTGCATCCCAAGTTGAAAAGAGTGATGGATGCGTGGTTTGACGAACA TCCTGGCGGCCCCTACACCATTGCGGCTCCTCTGAAAATGGCCAGACGGC CTGAGCGGACCGAGTTCGATCAAATGGGGCCGAACGTGGCTCATCACCAT TTCAAGCGAACGCTCAAGGACAGCAAGTGGGCGGTGATCCGAGGCTTCCA TGTGTTGCGTCATTCCTTTGGGTCGAACTTGGCTCGGTCGGGGAAAGTCT CCCGCGACACGATCGGTGAGTGGATGGGTCACTCCACAGAGGAAATGAAG ACGCTCTATCAGCATCTCTTTCCGCAAGATGGCCAGACTCAAATTAGCGT CTTGAAGTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig80800:44..703+

>mRNA_M-pyrifera_M_contig80800.18907.1 ID=mRNA_M-pyrifera_M_contig80800.18907.1|Name=mRNA_M-pyrifera_M_contig80800.18907.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1320bp|location=Sequence derived from alignment at M-pyrifera_M_contig80800:44..703+ (Macrocystis pyrifera P11B4 male)
CAAACCTGGACTCAGATTGAACGTAGAATCAGACGCGGAGGTTTGACGGA
GAAGCAGAAGAAGGAGTTGTGGGCCAGCCTGTTTCTCGATGAAGATCAAA
TTTCAGAACTGCTCAAGTACGTCAAGAAGAACGCGGCCCACCCTTTCATC
TATCCGATGTTTGTCTTCACGGCCTATGCCGGGACTCGCCGGAGTGAGGT
TCTCCGTTCCGACATTGAAGACTTTGATTTCGACACCAATCAAATTCTCA
TCCGGGAGAGAAAGCGACGGAAGGATATGCAGCAGACCTTCCGTTTCGTC
CCTCTGCATCCCAAGTTGAAAAGAGTGATGGATGCGTGGTTTGACGAACA
TCCTGGCGGCCCCTACACCATTGCGGCTCCTCTGAAAATGGCCAGACGGC
CTGAGCGGACCGAGTTCGATCAAATGGGGCCGAACGTGGCTCATCACCAT
TTCAAGCGAACGCTCAAGGACAGCAAGTGGGCGGTGATCCGAGGCTTCCA
TGTGTTGCGTCATTCCTTTGGGTCGAACTTGGCTCGGTCGGGGAAAGTCT
CCCGCGACACGATCGGTGAGTGGATGGGTCACTCCACAGAGGAAATGAAG
ACGCTCTATCAGCATCTCTTTCCGCAAGATGGCCAGACTCAAATTAGCGT
CTTGAAGTAACAAACCTGGACTCAGATTGAACGTAGAATCAGACGCGGAG
GTTTGACGGAGAAGCAGAAGAAGGAGTTGTGGGCCAGCCTGTTTCTCGAT
GAAGATCAAATTTCAGAACTGCTCAAGTACGTCAAGAAGAACGCGGCCCA
CCCTTTCATCTATCCGATGTTTGTCTTCACGGCCTATGCCGGGACTCGCC
GGAGTGAGGTTCTCCGTTCCGACATTGAAGACTTTGATTTCGACACCAAT
CAAATTCTCATCCGGGAGAGAAAGCGACGGAAGGATATGCAGCAGACCTT
CCGTTTCGTCCCTCTGCATCCCAAGTTGAAAAGAGTGATGGATGCGTGGT
TTGACGAACATCCTGGCGGCCCCTACACCATTGCGGCTCCTCTGAAAATG
GCCAGACGGCCTGAGCGGACCGAGTTCGATCAAATGGGGCCGAACGTGGC
TCATCACCATTTCAAGCGAACGCTCAAGGACAGCAAGTGGGCGGTGATCC
GAGGCTTCCATGTGTTGCGTCATTCCTTTGGGTCGAACTTGGCTCGGTCG
GGGAAAGTCTCCCGCGACACGATCGGTGAGTGGATGGGTCACTCCACAGA
GGAAATGAAGACGCTCTATCAGCATCTCTTTCCGCAAGATGGCCAGACTC
AAATTAGCGTCTTGAAGTAA
back to top