mRNA_M-pyrifera_M_contig80800.18907.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig80800.18907.1 vs. uniprot
Match: A0A517RI04_9PLAN (Site-specific tyrosine recombinase XerC n=2 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RI04_9PLAN) HSP 1 Score: 201 bits (511), Expect = 4.660e-61 Identity = 104/219 (47.49%), Postives = 146/219 (66.67%), Query Frame = 1 Query: 1 QTWTQIERRIRRGGLTEKQKKELWASLFLDEDQISELLKYVKKNAAHPFIYPMFVFTAYAGTRRSEVLRSDIEDFDFDTNQILIRERKRRKDMQQTFRFVPLHPKLKRVMDAWFDEHPGGPYTIAAPLKMARR-PERTEFDQMGPNVAHHHFKRTLKDSKWAVIRGFHVLRHSFGSNLARSGKVSRDTIGEWMGHSTEEMKTLYQHLFPQDGQTQISVL 654 QTW +IER+I+ G++E + ++LW L+L +QI +LLK V++ A+ PF+YPMF F AY G RRSE++RS + D DF+ I IRE+KR + T R +PL L+RV+ WF HPGGP+T LK+AR +RTE + P+ A HHFK TL +S+W V+RG+H LRHSF SN A G + + I EW+GH+TE M+ Y+HLFP + + +L Sbjct: 59 QTWEEIERQIQ-NGVSELEHEDLWECLYLSMEQIEKLLKDVERLASFPFVYPMFCFAAYTGARRSEMIRSQVRDIDFENKVITIREKKRVRGKLSTRR-IPLSQPLERVLRLWFKNHPGGPHTFCHHLKVARSITKRTEPIALTPDEAAHHFKHTLSESEWKVVRGWHCLRHSFISNCASKG-IDQRMIDEWVGHTTEAMRRRYRHLFPSSQKDAMQML 274
BLAST of mRNA_M-pyrifera_M_contig80800.18907.1 vs. uniprot
Match: A0A517VFD8_9PLAN (Site-specific tyrosine recombinase XerC n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VFD8_9PLAN) HSP 1 Score: 202 bits (514), Expect = 8.210e-60 Identity = 106/215 (49.30%), Postives = 142/215 (66.05%), Query Frame = 1 Query: 13 QIERRIRRGGLTEKQKKELWASLFLDEDQISELLKYVKKNAAHPFIYPMFVFTAYAGTRRSEVLRSDIEDFDFDTNQILIRERKRRKDMQQTFRFVPLHPKLKRVMDAWFDEHPGGPYTIAA-PLKMARRPERTEFDQMGPNVAHHHFKRTLKDSKWAVIRGFHVLRHSFGSNLARSGKVSRDTIGEWMGHSTEEMKTLYQHLFPQDGQTQISVL 654 +I+R+I R GLTE+Q K LW SLFL +++I ++L ++ FIYPMFVF A+ G RRSE+LRS IEDFDFDT + IRE+K+ K+ TFR V + P L +M WF+ HPGG +TI P +++ + E M + A +HFK TL W+ IRGFHV RHSF SNLA +G V + I EWMGH TEEM+ Y+HLFPQ ++ I ++ Sbjct: 201 EIDRKISRNGLTEEQVKRLWESLFLKKEEICKILDGIRSLNTFSFIYPMFVFVAHTGARRSEILRSRIEDFDFDTKIVKIREKKKVKNRNITFRHVDMTPLLYDIMKCWFENHPGGQFTICDDPEEISAGLDEDELG-MSKHKAQYHFKETLARIDWSKIRGFHVFRHSFASNLASAG-VDQRVIDEWMGHQTEEMRRRYRHLFPQQRRSAIELV 413
BLAST of mRNA_M-pyrifera_M_contig80800.18907.1 vs. uniprot
Match: A0A847GTE6_9BACT (Site-specific integrase n=1 Tax=Candidatus Anammoximicrobium sp. TaxID=2699742 RepID=A0A847GTE6_9BACT) HSP 1 Score: 199 bits (506), Expect = 3.240e-59 Identity = 107/216 (49.54%), Postives = 136/216 (62.96%), Query Frame = 1 Query: 1 QTWTQIERRIRRGGLTEKQKKELWASLFLDEDQISELLKYVKKNAAHPFIYPMFVFTAYAGTRRSEVLRSDIEDFDFDTNQILIRERKRRKDMQQTFRFVPLHPKLKRVMDAWFDEHPGGPYTIAAPLKMAR-RPERTEFDQMGPNVAHHHFKRTLKDSKWAVIRGFHVLRHSFGSNLARSGKVSRDTIGEWMGHSTEEMKTLYQHLFPQDGQTQI 645 QTW +IER+I RGGLTE ++ ELW LFL +I ELL +VK++ PF+YPMFVF A+ G RRSE++RS+I+DFDF+ +LIRE+KR + T R VPL P L M WF HPGG +T ++ R R R + + AH HFKRTL SKW +RG+HV RHSF SN A G + + I W+GH TEEM Y+HL P Q I Sbjct: 142 QTWEEIERKIARGGLTETEQTELWDCLFLTLPEIEELLGFVKQSGRWPFVYPMFVFAAHTGARRSEMVRSEIDDFDFEGGTVLIREKKRVRGKLSTRR-VPLSPLLVETMRHWFANHPGGRHTFCLDCRLPRGRKTREIGTPITRDEAHDHFKRTLAGSKWDKLRGWHVFRHSFCSNCAAKG-IDQRIINAWVGHQTEEMVRRYRHLIPNQQQEAI 355
BLAST of mRNA_M-pyrifera_M_contig80800.18907.1 vs. uniprot
Match: A0A5B9W9U0_9BACT (Tyrosine recombinase n=1 Tax=Aquisphaera giovannonii TaxID=406548 RepID=A0A5B9W9U0_9BACT) HSP 1 Score: 199 bits (506), Expect = 1.110e-58 Identity = 104/216 (48.15%), Postives = 139/216 (64.35%), Query Frame = 1 Query: 1 QTWTQIERRIRRGGLTEKQKKELWASLFLDEDQISELLKYVKKNAAHPFIYPMFVFTAYAGTRRSEVLRSDIEDFDFDTNQILIRERKRRKDMQQTFRFVPLHPKLKRVMDAWFDEHPGGPYTIAAPLKMAR-RPERTEFDQMGPNVAHHHFKRTLKDSKWAVIRGFHVLRHSFGSNLARSGKVSRDTIGEWMGHSTEEMKTLYQHLFPQDGQTQI 645 QT +IE +++RGGL + +K+ELW SLFL +++E L YV++ A H +IYPMF F A+ G RRSE+LRS I DFDF +LIRE+KR K ++T R VPL L +VM WFD HPGG Y+I PLK+ + R R ++ + + ++HHF T+ SKW VI G+H RHSF SN A G V + I W+GH TEEM Y HL P +T + Sbjct: 195 QTRAEIEEQLKRGGLKDDEKRELWNSLFLTLPEVAEFLGYVQETARHDWIYPMFCFAAHTGARRSEILRSRIADFDFQAKSVLIREKKRVKG-RRTTRRVPLSAFLAKVMREWFDAHPGGVYSICQPLKIFKSRKSRADYVPVTVDESNHHFNATIAGSKWEVIPGWHCFRHSFASNCAARG-VDQRLINAWLGHQTEEMARRYAHLIPNVAKTAL 408
BLAST of mRNA_M-pyrifera_M_contig80800.18907.1 vs. uniprot
Match: UPI00024724ED (tyrosine-type recombinase/integrase n=1 Tax=Singulisphaera acidiphila TaxID=466153 RepID=UPI00024724ED) HSP 1 Score: 192 bits (489), Expect = 1.150e-58 Identity = 99/217 (45.62%), Postives = 134/217 (61.75%), Query Frame = 1 Query: 4 TWTQIERRIRRGGLTEKQKKELWASLFLDEDQISELLKYVKKNAAHPFIYPMFVFTAYAGTRRSEVLRSDIEDFDFDTNQILIRERKRRKDMQQTFRFVPLHPKLKRVMDAWFDEHPGGPYTIAAPLKMARRPERTEFDQMGPNVAHHHFKRTLKDSKWAVIRGFHVLRHSFGSNLARSGKVSRDTIGEWMGHSTEEMKTLYQHLFPQDGQTQISVL 654 +W QIER I RGGLTE + KELW L+LD D++ E L++V++ ++YPM AY G RRSE+ RS I D+ FD + IR++KR K T+R VP+H KL V AWF +HPGG + R + +++ + A +H + +K SKW V+RGFHVLRHSF SNLA + K R I WMGHST+ ++ YQHL P+D Q I +L Sbjct: 2 SWPQIEREIARGGLTEAETKELWDCLWLDRDEVREFLEHVRQAGGPTYLYPMVCMAAYTGARRSELCRSRISDWRFDDKTVKIRQKKRDKKKMFTYRDVPIHSKLAEVATAWFADHPGGQFAFC----------RADREEVSWDTATYHLNQAIKGSKWEVVRGFHVLRHSFASNLAAANKDQRK-IDRWMGHSTD-IRWRYQHLRPEDQQEDIGIL 206
BLAST of mRNA_M-pyrifera_M_contig80800.18907.1 vs. uniprot
Match: A0A7C4UW41_9BACT (Site-specific integrase n=1 Tax=Gemmataceae bacterium TaxID=2052164 RepID=A0A7C4UW41_9BACT) HSP 1 Score: 193 bits (490), Expect = 3.180e-56 Identity = 104/219 (47.49%), Postives = 139/219 (63.47%), Query Frame = 1 Query: 1 QTWTQIERRIRRGGLTEKQKKELWASLFLDEDQISELLKYVKKNAAHPFIYPMFVFTAYAGTRRSEVLRSDIEDFDFDTNQILIRERKRRKDMQQTFRFVPLHPKLKRVMDAWFDEHPGGPYTIAAPLKMARRPERTEFDQMGPNVAHHHFKRTLKDSKWA-VIRGFHVLRHSFGSNLARSGKVSRDTIGEWMGHSTEEMKTLYQHLFPQDGQTQISVL 654 QT +IER+I RGGL+ +Q LW L+L ++ +L +VKK AA PF+YPMF FTAY G RRSE+LRS IEDFDFD + IRE+K+ K+ + TFR VP+ L +M AWF +HPGG TI ER + + P +AH F+ +K S W +RG+HV RHSF SN A G + + I +WMGH+TEEM+ YQHLFP D ++++ Sbjct: 212 QTRDEIERQITRGGLSPEQIAVLWECLYLRVQEVEAILSHVKK-AAQPFLYPMFCFTAYTGARRSEILRSQIEDFDFDRRMVTIREKKKSKEKKLTFRQVPISNVLAAIMKAWFAKHPGGNLTIC---------ERAS-ESVSPQMAHFWFQEAIKGSGWENKMRGWHVFRHSFASNCASKG-IDQRMIDKWMGHTTEEMRKRYQHLFPDDQHKALALV 418
BLAST of mRNA_M-pyrifera_M_contig80800.18907.1 vs. uniprot
Match: UPI0013ED4C0B (site-specific integrase n=1 Tax=Paludisphaera soli TaxID=2712865 RepID=UPI0013ED4C0B) HSP 1 Score: 192 bits (487), Expect = 7.890e-56 Identity = 103/209 (49.28%), Postives = 134/209 (64.11%), Query Frame = 1 Query: 1 QTWTQIERRIRRGGLTEKQKKELWASLFLDEDQISELLKYVKKNAAHPFIYPMFVFTAYAGTRRSEVLRSDIEDFDFDTNQILIRERKRRKDMQQTFRFVPLHPKLKRVMDAWFDEHPGGPYTIAAPLKMAR-RPERTEFDQMGPNVAHHHFKRTLKDSKWAVIRGFHVLRHSFGSNLARSGKVSRDTIGEWMGHSTEEMKTLYQHLFP 624 QT +IER+I RG L + + +LWA L+L ++ E+L++V+ A H FIYPMFVF A+ G RRSE+LRS I DFDF+ +IRE+KR K + T R VPL P+L VM WF HPGG YTI+ R R E + + ++HHF R L +S+W+VIRG+HV RHSF SN A G V + I WMGH TEEM+ Y+HL P Sbjct: 195 QTRAEIERQIERGRLAPRDQDDLWACLYLTLPEVEEVLEHVRSTARHAFIYPMFVFAAHTGARRSEILRSRIADFDFEAGTAVIREKKRVKG-RWTTRRVPLSPRLAGVMRDWFAAHPGGAYTISREAGSGHGREGRPEGGTLTRDESNHHFHRALAESRWSVIRGWHVFRHSFASNCAARG-VDQRLIDAWMGHQTEEMRRRYRHLSP 401
BLAST of mRNA_M-pyrifera_M_contig80800.18907.1 vs. uniprot
Match: A0A847H1W9_9BACT (Site-specific integrase n=1 Tax=Candidatus Anammoximicrobium sp. TaxID=2699742 RepID=A0A847H1W9_9BACT) HSP 1 Score: 192 bits (488), Expect = 8.160e-56 Identity = 104/219 (47.49%), Postives = 140/219 (63.93%), Query Frame = 1 Query: 1 QTWTQIERRIRRGGLTEKQKKELWASLFLDEDQISELLKYVKKNAAHPFIYPMFVFTAYAGTRRSEVLRSDIEDFDFDTNQILIRERKRRKDMQQTFRFVPLHPKLKRVMDAWFDEHPGGPYTIAAPLKMAR-RPERTEFDQMGPNVAHHHFKRTLKDSKWAVIRGFHVLRHSFGSNLARSGKVSRDTIGEWMGHSTEEMKTLYQHLFPQDGQTQISVL 654 QTW +IER+I RGGLT+ + +LW LFL +I ELL++V+ +A PFIYPM +F A+ G RRSE++RS+I+D DFD +LIRE+KR + T R VPL P L +V+ W HPGG +T A ++ R R R+ Q+ + AH HFKRTL S+W IRG+H+ RHSF SN A G + + I W+GH TEEM Y+HL P Q I ++ Sbjct: 197 QTWQEIERKISRGGLTKAEVADLWDCLFLTLPEIEELLEFVRAHAKQPFIYPMVMFAAHTGARRSEMVRSEIDDIDFDGATVLIREKKRIRGKLSTRR-VPLSPFLVQVLRDWLKIHPGGRHTFALGAEVPRSRKTRSIGTQLTRDEAHDHFKRTLLGSRWERIRGWHIFRHSFCSNCAAKG-IDQRIINAWVGHQTEEMVRRYRHLIPNQQQEAIRLV 413
BLAST of mRNA_M-pyrifera_M_contig80800.18907.1 vs. uniprot
Match: A0A2G2KQR5_9BACT (Recombinase XerD n=1 Tax=Blastopirellula sp. TaxID=2024826 RepID=A0A2G2KQR5_9BACT) HSP 1 Score: 191 bits (485), Expect = 1.490e-55 Identity = 102/219 (46.58%), Postives = 140/219 (63.93%), Query Frame = 1 Query: 1 QTWTQIERRIRRGGLTEKQKKELWASLFLDEDQISELLKYVKKNAAHPFIYPMFVFTAYAGTRRSEVLRSDIEDFDFDTNQILIRERKRRKDMQQTFRFVPLHPKLKRVMDAWFDEHPGGPYTIAAPLKMAR-RPERTEFDQMGPNVAHHHFKRTLKDSKWAVIRGFHVLRHSFGSNLARSGKVSRDTIGEWMGHSTEEMKTLYQHLFPQDGQTQISVL 654 QTW +IER+++ G++ +++ LW L+L QI E L K+ AA PFI+PM F AY G RRSE++RS I D DF++ I IRE+KR + T R VPL L RV+ WF HPGGP+T +K+ R + +RTE + + A HHFK+T+ +SKW VIRG+H LRHSF SN A G + + I EW+GH+TE M+ Y+HLFP Q + +L Sbjct: 196 QTWEEIERQVQ-NGISGEEQANLWNCLYLSMPQIEEFLADAKQTAAFPFIHPMVCFAAYTGARRSEIMRSHIGDIDFESKNITIREKKRIRGKLSTRR-VPLSAPLARVLRQWFKIHPGGPHTFCQSMKIERPKTKRTEPTPITRDEAAHHFKKTMSNSKWEVIRGWHCLRHSFISNCACKG-IDQRMIDEWVGHTTESMRRRYRHLFPSSQQEAMELL 411
BLAST of mRNA_M-pyrifera_M_contig80800.18907.1 vs. uniprot
Match: A0A518GYS4_9BACT (Site-specific tyrosine recombinase XerC n=1 Tax=Tautonia plasticadhaerens TaxID=2527974 RepID=A0A518GYS4_9BACT) HSP 1 Score: 191 bits (484), Expect = 2.260e-55 Identity = 100/217 (46.08%), Postives = 134/217 (61.75%), Query Frame = 1 Query: 4 TWTQIERRIRRGGLTEKQKKELWASLFLDEDQISELLKYVKKNAAHPFIYPMFVFTAYAGTRRSEVLRSDIEDFDFDTNQILIRERKRRKDMQQTFRFVPLHPKLKRVMDAWFDEHPGGPYTIAAPLKMARRPERTEFDQMGPNVAHHHFKRTLKDSKWAVIRGFHVLRHSFGSNLARSGKVSRDTIGEWMGHSTEEMKTLYQHLFPQDGQTQISVL 654 T QIER+++RGGLTE++++E W L+L ++I E+L V+ NA PFIYPMF F A G RR E+LRS I+DFDF+ + I+ K R+ Q R V +HP+L+ VM WF HPGG +T+ + + + + A+HHF + LK SKW VI+GFHV RHSF S LA G V + I +++GH TEEMK YQHL P G I L Sbjct: 208 TSEQIERKLKRGGLTEQERREQWDCLYLTGEEIEEVLDLVQANATAPFIYPMFAFVALTGARRGELLRSQIDDFDFEAGSVTIQGTKGRQRTQIVAREVDIHPRLRDVMTGWFAHHPGGQHTLC----------KADGSPLTVHEANHHFDQPLKGSKWQVIKGFHVFRHSFASILASRG-VDQRYIDKYLGHQTEEMKKRYQHLHPGKGGKPIDAL 413 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80800.18907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig80800.18907.1 >prot_M-pyrifera_M_contig80800.18907.1 ID=prot_M-pyrifera_M_contig80800.18907.1|Name=mRNA_M-pyrifera_M_contig80800.18907.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=220bp QTWTQIERRIRRGGLTEKQKKELWASLFLDEDQISELLKYVKKNAAHPFIback to top mRNA from alignment at M-pyrifera_M_contig80800:44..703+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig80800.18907.1 ID=mRNA_M-pyrifera_M_contig80800.18907.1|Name=mRNA_M-pyrifera_M_contig80800.18907.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig80800:44..703+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig80800:44..703+ >mRNA_M-pyrifera_M_contig80800.18907.1 ID=mRNA_M-pyrifera_M_contig80800.18907.1|Name=mRNA_M-pyrifera_M_contig80800.18907.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1320bp|location=Sequence derived from alignment at M-pyrifera_M_contig80800:44..703+ (Macrocystis pyrifera P11B4 male)back to top |