mRNA_M-pyrifera_M_contig80679.18885.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80679.18885.1
Unique NamemRNA_M-pyrifera_M_contig80679.18885.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig80679.18885.1 vs. uniprot
Match: A0A7X7EZI7_9BACT (Uncharacterized protein n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=A0A7X7EZI7_9BACT)

HSP 1 Score: 63.5 bits (153), Expect = 3.080e-10
Identity = 26/47 (55.32%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:   46 WFLLTDGRSDGRAYFEGYDRQTRRHVGYIGLGGFQESKPTNDEQFPL 186
            W+L+ DG SDG A+FEGYD QT+  VGYIG  GFQ  KP++ ++F +
Sbjct:    5 WWLIHDGESDGSAWFEGYDMQTKLRVGYIGRNGFQLEKPSSKDRFSI 51
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80679.18885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7X7EZI7_9BACT3.080e-1055.32Uncharacterized protein n=1 Tax=Pirellulaceae bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80679contigM-pyrifera_M_contig80679:165..356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size192
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816711.9174778-CDS-M-pyrifera_M_contig80679:164..3561622816711.9174778-CDS-M-pyrifera_M_contig80679:164..356Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80679 165..356 +
1692278134.788633-CDS-M-pyrifera_M_contig80679:164..3561692278134.788633-CDS-M-pyrifera_M_contig80679:164..356Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80679 165..356 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80679.18885.1prot_M-pyrifera_M_contig80679.18885.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80679 165..356 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80679.18885.1

>prot_M-pyrifera_M_contig80679.18885.1 ID=prot_M-pyrifera_M_contig80679.18885.1|Name=mRNA_M-pyrifera_M_contig80679.18885.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=64bp
SRIHALAESVRGTENWFLLTDGRSDGRAYFEGYDRQTRRHVGYIGLGGFQ
ESKPTNDEQFPLDA
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mRNA from alignment at M-pyrifera_M_contig80679:165..356+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80679.18885.1 ID=mRNA_M-pyrifera_M_contig80679.18885.1|Name=mRNA_M-pyrifera_M_contig80679.18885.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=192bp|location=Sequence derived from alignment at M-pyrifera_M_contig80679:165..356+ (Macrocystis pyrifera P11B4 male)
TCTCGTATCCATGCCTTGGCAGAAAGCGTCCGAGGGACCGAGAATTGGTT
TCTCCTCACTGATGGCCGGTCTGACGGGAGAGCCTACTTCGAGGGATACG
ACAGGCAGACGCGACGACATGTTGGCTACATCGGCCTGGGAGGATTCCAG
GAATCAAAGCCTACGAACGATGAGCAGTTTCCTCTCGATGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80679:165..356+

>mRNA_M-pyrifera_M_contig80679.18885.1 ID=mRNA_M-pyrifera_M_contig80679.18885.1|Name=mRNA_M-pyrifera_M_contig80679.18885.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig80679:165..356+ (Macrocystis pyrifera P11B4 male)
TCTCGTATCCATGCCTTGGCAGAAAGCGTCCGAGGGACCGAGAATTGGTT
TCTCCTCACTGATGGCCGGTCTGACGGGAGAGCCTACTTCGAGGGATACG
ACAGGCAGACGCGACGACATGTTGGCTACATCGGCCTGGGAGGATTCCAG
GAATCAAAGCCTACGAACGATGAGCAGTTTCCTCTCGATGCGTCTCGTAT
CCATGCCTTGGCAGAAAGCGTCCGAGGGACCGAGAATTGGTTTCTCCTCA
CTGATGGCCGGTCTGACGGGAGAGCCTACTTCGAGGGATACGACAGGCAG
ACGCGACGACATGTTGGCTACATCGGCCTGGGAGGATTCCAGGAATCAAA
GCCTACGAACGATGAGCAGTTTCCTCTCGATGCG
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