mRNA_M-pyrifera_M_contig80367.18828.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80367.18828.1
Unique NamemRNA_M-pyrifera_M_contig80367.18828.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig80367.18828.1 vs. uniprot
Match: A0A2E7K528_9PLAN (Uncharacterized protein n=5 Tax=Gimesia TaxID=1649453 RepID=A0A2E7K528_9PLAN)

HSP 1 Score: 231 bits (590), Expect = 2.840e-65
Identity = 231/241 (95.85%), Postives = 235/241 (97.51%), Query Frame = 1 
Query:   76 IQLGSITATGGTTAVNIDNSTAHITIDELNSSNASNSALAVNQLTGSLEVKQGTITNSGVAGVQLTDSTEITLRNLTINTPASNPTGTSITATGTSNLLVASSAINHAGAGXXXXXXXXXXXXXXXQTPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIQNAGGSIQLGTITTTNGAVSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLNGGTFTSIGTAGAQITDSSNV 798
            IQLGSITATGGTTAVNIDNSTAHITIDELNS+NASNSALAVNQLTGSLEVKQGTITNSGVAGVQLTDSTEITLR+LTINTPASNPTGTSITATGTSNLLVASS+INHAGA XXXXXXXXXXXXXXX    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX QNAGGSIQLGTITTTNGAVSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLNGGTFTSIGTAGAQIT+SSNV
Sbjct:  535 IQLGSITATGGTTAVNIDNSTAHITIDELNSTNASNSALAVNQLTGSLEVKQGTITNSGVAGVQLTDSTEITLRDLTINTPASNPTGTSITATGTSNLLVASSSINHAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNAGGSIQLGTITTTNGAVSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLNGGTFTSIGTAGAQITNSSNV 775
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BLAST of mRNA_M-pyrifera_M_contig80367.18828.1 vs. uniprot
Match: A0A2D5GZA2_9PLAN (Beta_helix domain-containing protein (Fragment) n=3 Tax=Planctomycetaceae TaxID=126 RepID=A0A2D5GZA2_9PLAN)

HSP 1 Score: 117 bits (294), Expect = 7.210e-26
Identity = 72/136 (52.94%), Postives = 95/136 (69.85%), Query Frame = 1 
Query:    1 DVTFTDSTITGTGANAVDILNSSGTIQLGSITATGGTTAVNIDNSTAHITIDELNSSNASNSALAVNQLTGSLEVKQGTITNSGVAGVQLTDSTEITLRNLTINTPASNPTGTSITATGTSNLLVASSAINHAGAG 408
            DVTFT+S IT T  + +DI  ++GT+  G IT T GT +VNIDN+ A ITI  L S++ASN+A+  N LTGS  +  GTIT+SGVAGVQ T+S++ITL N TINT  +  +G+SI A G  NL V++ +I H G G
Sbjct:    1 DVTFTNSAITNTNGDGLDIQTAAGTMLFGQITTTNGTNSVNIDNTPADITIAGLTSTDASNTAINFNDLTGSFTLNSGTITDSGVAGVQATNSSDITLDNTTINTALAVGSGSSILANGIGNLTVSNGSITHEGTG 136
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BLAST of mRNA_M-pyrifera_M_contig80367.18828.1 vs. uniprot
Match: A6CCK3_9PLAN (Beta_helix domain-containing protein n=8 Tax=Planctomycetaceae TaxID=126 RepID=A6CCK3_9PLAN)

HSP 1 Score: 78.2 bits (191), Expect = 2.660e-12
Identity = 43/84 (51.19%), Postives = 63/84 (75.00%), Query Frame = 1 
Query:   43 NAVDILNSSGTIQLGSITATGGTTAVNIDNSTAHITIDELNSSNASNSALAVNQLTGSLEVKQGTITNSGVAGVQLTDSTEITL 294
            NAV I NS GTI+ G IT + G+TAV+ID+S+A+ITI ELN+SN + + L +N ++GS+ +  GT+ NSG +GVQ+ DS  +T+
Sbjct:  518 NAVVIANSGGTIEFGQITTSNGSTAVDIDDSSANITIAELNTSNTTLAPLDINNVSGSVTLNGGTLNNSGFSGVQIADSKNVTI 601
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BLAST of mRNA_M-pyrifera_M_contig80367.18828.1 vs. uniprot
Match: A0A517PHG5_9PLAN (Beta_helix domain-containing protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PHG5_9PLAN)

HSP 1 Score: 70.5 bits (171), Expect = 9.530e-10
Identity = 40/77 (51.95%), Postives = 57/77 (74.03%), Query Frame = 1 
Query:   49 VDILNSSGTIQLGSITATGGTTAVNIDNSTAHITIDELNSSNASNSALAVNQLTGSLEVKQGTITNSGVAGVQLTDS 279
            V I NS GTI+ G IT T G+TAV+ID+S+A+ITI ELN+SN + + L +N ++GS+ +  GT  NSG +GVQ+ +S
Sbjct:  522 VVIANSGGTIEFGQITTTNGSTAVDIDDSSANITIAELNTSNTTLAPLDINNVSGSVTLNGGTFNNSGFSGVQIVNS 598
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80367.18828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2E7K528_9PLAN2.840e-6595.85Uncharacterized protein n=5 Tax=Gimesia TaxID=1649... [more]
A0A2D5GZA2_9PLAN7.210e-2652.94Beta_helix domain-containing protein (Fragment) n=... [more]
A6CCK3_9PLAN2.660e-1251.19Beta_helix domain-containing protein n=8 Tax=Planc... [more]
A0A517PHG5_9PLAN9.530e-1051.95Beta_helix domain-containing protein n=1 Tax=Gimes... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80367contigM-pyrifera_M_contig80367:11..943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score79.3
Seed ortholog evalue3.4e-12
Seed eggNOG ortholog344747.PM8797T_06370
KEGG koko:K01729,ko:K09942
KEGG ReactionR03706
KEGG Pathwayko00051,map00051
Hectar predicted targeting categoryother localisation
EggNOG free text desc.COG3210 Large exoproteins involved in heme utilization or adhesion
EggNOG OGs2J2R9@203682,COG3210@1,COG3210@2
EC4.2.2.3
COG Functional cat.U
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size933
Cds size933
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816709.065932-CDS-M-pyrifera_M_contig80367:10..9431622816709.065932-CDS-M-pyrifera_M_contig80367:10..943Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80367 11..943 -
1692278133.125759-CDS-M-pyrifera_M_contig80367:10..9431692278133.125759-CDS-M-pyrifera_M_contig80367:10..943Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80367 11..943 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80367.18828.1prot_M-pyrifera_M_contig80367.18828.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80367 11..943 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80367.18828.1

>prot_M-pyrifera_M_contig80367.18828.1 ID=prot_M-pyrifera_M_contig80367.18828.1|Name=mRNA_M-pyrifera_M_contig80367.18828.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=311bp
DVTFTDSTITGTGANAVDILNSSGTIQLGSITATGGTTAVNIDNSTAHIT
IDELNSSNASNSALAVNQLTGSLEVKQGTITNSGVAGVQLTDSTEITLRN
LTINTPASNPTGTSITATGTSNLLVASSAINHAGAGTAVSLTNSSGTVTF
DQTPITKDDGLAVSITGGNADITFTGSDITNTDGEGIDIQNAGGSIQLGT
ITTTNGAVSANINGGDADITIAELNSDNASTSPLVINNQTGSFTLNGGTF
TSIGTAGAQITDSSNVTIQGVTMQTPTTYGIYAQNVNNLNLNGNTIIDVS
LDGIYVQNLTG
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mRNA from alignment at M-pyrifera_M_contig80367:11..943-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80367.18828.1 ID=mRNA_M-pyrifera_M_contig80367.18828.1|Name=mRNA_M-pyrifera_M_contig80367.18828.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=933bp|location=Sequence derived from alignment at M-pyrifera_M_contig80367:11..943- (Macrocystis pyrifera P11B4 male)
GATGTCACCTTCACTGACAGTACAATCACAGGCACCGGCGCCAACGCCGT
TGATATTCTGAACTCCAGCGGCACCATTCAGCTCGGTTCGATCACCGCAA
CCGGCGGAACCACAGCGGTGAACATCGACAACAGCACGGCGCACATCACC
ATTGACGAACTCAACAGTTCCAATGCTTCGAACAGCGCCCTGGCCGTCAA
TCAGCTGACCGGCAGCCTGGAAGTCAAACAGGGTACGATCACCAACAGCG
GCGTCGCCGGGGTGCAGCTCACCGATTCCACCGAGATCACCCTCCGCAAC
CTGACCATCAATACGCCTGCGTCCAATCCGACGGGTACTTCGATTACTGC
AACAGGAACCAGCAATCTGCTGGTGGCCAGCAGCGCCATCAATCATGCAG
GTGCAGGCACCGCCGTCAGTCTGACCAATTCCAGTGGCACCGTCACCTTC
GACCAAACCCCCATCACCAAGGACGACGGTCTCGCTGTTTCGATTACAGG
CGGTAATGCGGATATCACATTCACCGGCAGTGACATCACCAACACCGACG
GAGAAGGAATCGATATCCAGAATGCCGGCGGTTCCATTCAACTGGGAACA
ATCACGACTACGAACGGAGCTGTTTCAGCAAATATCAACGGCGGTGATGC
AGACATCACCATTGCAGAACTCAACAGCGATAACGCCTCCACCAGCCCAC
TGGTCATCAACAATCAGACCGGCAGCTTCACACTCAACGGAGGAACTTTC
ACCAGCATCGGAACTGCAGGCGCACAGATCACCGACTCTTCCAATGTCAC
CATCCAGGGTGTGACAATGCAGACCCCAACCACTTACGGGATCTATGCTC
AAAACGTGAATAACCTGAATCTCAACGGCAATACGATTATCGACGTCAGC
CTGGATGGGATCTATGTGCAGAATCTCACCGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80367:11..943-

>mRNA_M-pyrifera_M_contig80367.18828.1 ID=mRNA_M-pyrifera_M_contig80367.18828.1|Name=mRNA_M-pyrifera_M_contig80367.18828.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1866bp|location=Sequence derived from alignment at M-pyrifera_M_contig80367:11..943- (Macrocystis pyrifera P11B4 male)
GATGTCACCTTCACTGACAGTACAATCACAGGCACCGGCGCCAACGCCGT
TGATATTCTGAACTCCAGCGGCACCATTCAGCTCGGTTCGATCACCGCAA
CCGGCGGAACCACAGCGGTGAACATCGACAACAGCACGGCGCACATCACC
ATTGACGAACTCAACAGTTCCAATGCTTCGAACAGCGCCCTGGCCGTCAA
TCAGCTGACCGGCAGCCTGGAAGTCAAACAGGGTACGATCACCAACAGCG
GCGTCGCCGGGGTGCAGCTCACCGATTCCACCGAGATCACCCTCCGCAAC
CTGACCATCAATACGCCTGCGTCCAATCCGACGGGTACTTCGATTACTGC
AACAGGAACCAGCAATCTGCTGGTGGCCAGCAGCGCCATCAATCATGCAG
GTGCAGGCACCGCCGTCAGTCTGACCAATTCCAGTGGCACCGTCACCTTC
GACCAAACCCCCATCACCAAGGACGACGGTCTCGCTGTTTCGATTACAGG
CGGTAATGCGGATATCACATTCACCGGCAGTGACATCACCAACACCGACG
GAGAAGGAATCGATATCCAGAATGCCGGCGGTTCCATTCAACTGGGAACA
ATCACGACTACGAACGGAGCTGTTTCAGCAAATATCAACGGCGGTGATGC
AGACATCACCATTGCAGAACTCAACAGCGATAACGCCTCCACCAGCCCAC
TGGTCATCAACAATCAGACCGGCAGCTTCACACTCAACGGAGGAACTTTC
ACCAGCATCGGAACTGCAGGCGCACAGATCACCGACTCTTCCAATGTCAC
CATCCAGGGTGTGACAATGCAGACCCCAACCACTTACGGGATCTATGCTC
AAAACGTGAATAACCTGAATCTCAACGGCAATACGATTATCGACGTCAGC
CTGGATGGGATCTATGTGCAGAATCTCACCGGCGATGTCACCTTCACTGA
CAGTACAATCACAGGCACCGGCGCCAACGCCGTTGATATTCTGAACTCCA
GCGGCACCATTCAGCTCGGTTCGATCACCGCAACCGGCGGAACCACAGCG
GTGAACATCGACAACAGCACGGCGCACATCACCATTGACGAACTCAACAG
TTCCAATGCTTCGAACAGCGCCCTGGCCGTCAATCAGCTGACCGGCAGCC
TGGAAGTCAAACAGGGTACGATCACCAACAGCGGCGTCGCCGGGGTGCAG
CTCACCGATTCCACCGAGATCACCCTCCGCAACCTGACCATCAATACGCC
TGCGTCCAATCCGACGGGTACTTCGATTACTGCAACAGGAACCAGCAATC
TGCTGGTGGCCAGCAGCGCCATCAATCATGCAGGTGCAGGCACCGCCGTC
AGTCTGACCAATTCCAGTGGCACCGTCACCTTCGACCAAACCCCCATCAC
CAAGGACGACGGTCTCGCTGTTTCGATTACAGGCGGTAATGCGGATATCA
CATTCACCGGCAGTGACATCACCAACACCGACGGAGAAGGAATCGATATC
CAGAATGCCGGCGGTTCCATTCAACTGGGAACAATCACGACTACGAACGG
AGCTGTTTCAGCAAATATCAACGGCGGTGATGCAGACATCACCATTGCAG
AACTCAACAGCGATAACGCCTCCACCAGCCCACTGGTCATCAACAATCAG
ACCGGCAGCTTCACACTCAACGGAGGAACTTTCACCAGCATCGGAACTGC
AGGCGCACAGATCACCGACTCTTCCAATGTCACCATCCAGGGTGTGACAA
TGCAGACCCCAACCACTTACGGGATCTATGCTCAAAACGTGAATAACCTG
AATCTCAACGGCAATACGATTATCGACGTCAGCCTGGATGGGATCTATGT
GCAGAATCTCACCGGC
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