mRNA_M-pyrifera_M_contig80357.18826.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80357.18826.1
Unique NamemRNA_M-pyrifera_M_contig80357.18826.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig80357.18826.1 vs. uniprot
Match: D7FI23_ECTSI (DUSP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI23_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 4.790e-20
Identity = 36/49 (73.47%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:    1 HNTETKTWGPKPLLRAARREHMGHYRRVNEHVWALWVGSYAGSGPALWV 147
            H+  +K W PKPLLRAARREHMGHYRRVN HVW  W G+Y GSGPA+WV
Sbjct:   84 HDPASKAWVPKPLLRAARREHMGHYRRVNPHVWKKWAGTYRGSGPAIWV 132
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80357.18826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FI23_ECTSI4.790e-2073.47DUSP domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80357contigM-pyrifera_M_contig80357:288..443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionPeptidase C19, ubiquitin-specific peptidase, DUSP domain
Ec32 orthologEc-10_003230.1
Exons1
Model size156
Cds size156
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816708.983018-CDS-M-pyrifera_M_contig80357:287..4431622816708.983018-CDS-M-pyrifera_M_contig80357:287..443Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80357 288..443 +
1692278133.0916035-CDS-M-pyrifera_M_contig80357:287..4431692278133.0916035-CDS-M-pyrifera_M_contig80357:287..443Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80357 288..443 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80357.18826.1prot_M-pyrifera_M_contig80357.18826.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80357 288..443 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80357.18826.1

>prot_M-pyrifera_M_contig80357.18826.1 ID=prot_M-pyrifera_M_contig80357.18826.1|Name=mRNA_M-pyrifera_M_contig80357.18826.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=52bp
HNTETKTWGPKPLLRAARREHMGHYRRVNEHVWALWVGSYAGSGPALWVV
R*
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mRNA from alignment at M-pyrifera_M_contig80357:288..443+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80357.18826.1 ID=mRNA_M-pyrifera_M_contig80357.18826.1|Name=mRNA_M-pyrifera_M_contig80357.18826.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=156bp|location=Sequence derived from alignment at M-pyrifera_M_contig80357:288..443+ (Macrocystis pyrifera P11B4 male)
CACAATACGGAGACGAAGACGTGGGGGCCGAAACCGTTGCTGCGAGCGGC
GCGGAGAGAACACATGGGACACTACCGAAGGGTGAACGAGCACGTCTGGG
CGCTCTGGGTTGGGTCTTATGCCGGGAGCGGGCCGGCCCTCTGGGTGGTG
AGATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80357:288..443+

>mRNA_M-pyrifera_M_contig80357.18826.1 ID=mRNA_M-pyrifera_M_contig80357.18826.1|Name=mRNA_M-pyrifera_M_contig80357.18826.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig80357:288..443+ (Macrocystis pyrifera P11B4 male)
CACAATACGGAGACGAAGACGTGGGGGCCGAAACCGTTGCTGCGAGCGGC
GCGGAGAGAACACATGGGACACTACCGAAGGGTGAACGAGCACGTCTGGG
CGCTCTGGGTTGGGTCTTATGCCGGGAGCGGGCCGGCCCTCTGGGTGGTG
AGATAACACAATACGGAGACGAAGACGTGGGGGCCGAAACCGTTGCTGCG
AGCGGCGCGGAGAGAACACATGGGACACTACCGAAGGGTGAACGAGCACG
TCTGGGCGCTCTGGGTTGGGTCTTATGCCGGGAGCGGGCCGGCCCTCTGG
GTGGTGAGATAA
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