mRNA_M-pyrifera_M_contig8034.18825.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8034.18825.1
Unique NamemRNA_M-pyrifera_M_contig8034.18825.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8034.18825.1 vs. uniprot
Match: A0A6H5KI29_9PHAE (RanBD1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI29_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 8.070e-30
Identity = 51/55 (92.73%), Postives = 54/55 (98.18%), Query Frame = 1 
Query:    1 QVICNHVADPRIVLKPNAGSDRSWVWNAFDFTEGELEEITFALRLGNSDSANEFK 165
            +VICNHVADPRIVLKPNAGSDRSWVWNAFDFTEG+LEE+TFALR GNSDSANEFK
Sbjct:  128 KVICNHVADPRIVLKPNAGSDRSWVWNAFDFTEGQLEEMTFALRFGNSDSANEFK 182
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BLAST of mRNA_M-pyrifera_M_contig8034.18825.1 vs. uniprot
Match: D8LNF2_ECTSI (RanBD1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNF2_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 5.250e-28
Identity = 51/55 (92.73%), Postives = 54/55 (98.18%), Query Frame = 1 
Query:    1 QVICNHVADPRIVLKPNAGSDRSWVWNAFDFTEGELEEITFALRLGNSDSANEFK 165
            +VICNHVADPRIVLKPNAGSDRSWVWNAFDFTEG+LEE+TFALR GNSDSANEFK
Sbjct:  305 KVICNHVADPRIVLKPNAGSDRSWVWNAFDFTEGQLEEMTFALRFGNSDSANEFK 359
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BLAST of mRNA_M-pyrifera_M_contig8034.18825.1 vs. uniprot
Match: A0A1Z5JQI1_FISSO (RanBD1 domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JQI1_FISSO)

HSP 1 Score: 88.6 bits (218), Expect = 1.340e-21
Identity = 38/55 (69.09%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:    1 QVICNHVADPRIVLKPNAGSDRSWVWNAFDFTEGELEEITFALRLGNSDSANEFK 165
            +VI NHV DP+I L+PN GSDRSWVW+AFDF EGEL+E  FA+R G+SD ANEF+
Sbjct:    2 KVIANHVVDPKIKLEPNVGSDRSWVWSAFDFAEGELKETIFAIRFGDSDIANEFR 56
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BLAST of mRNA_M-pyrifera_M_contig8034.18825.1 vs. uniprot
Match: A0A835YXP9_9STRA (RanBP1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXP9_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 3.210e-21
Identity = 39/55 (70.91%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:    1 QVICNHVADPRIVLKPNAGSDRSWVWNAFDFTEGELEEITFALRLGNSDSANEFK 165
            ++I NHVADPRIVLKPN GSDRSWVW A+DF + EL E  FA+R G+SD+ANEFK
Sbjct:  124 KIIANHVADPRIVLKPNLGSDRSWVWTAYDFVDNELVETVFAIRFGSSDAANEFK 178
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BLAST of mRNA_M-pyrifera_M_contig8034.18825.1 vs. uniprot
Match: A0A7S1VE37_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VE37_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 8.220e-21
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 QVICNHVADPRIVLKPNAGSDRSWVWNAFDFTEGELEEITFALRLGNSDSANEFK 165
            +VICNHV DPRI L+PN GSDRSWVW+AFDF EG+L+E  FA+R  +SD A EFK
Sbjct:  102 KVICNHVLDPRITLEPNVGSDRSWVWSAFDFAEGDLKETVFAIRFSSSDVAKEFK 156
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BLAST of mRNA_M-pyrifera_M_contig8034.18825.1 vs. uniprot
Match: A0A7S3Q898_9STRA (Hypothetical protein (Fragment) n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q898_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 8.360e-21
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 QVICNHVADPRIVLKPNAGSDRSWVWNAFDFTEGELEEITFALRLGNSDSANEFK 165
            +VI NH  DPRI+L PNAGSDRSWVW+AFDF EGEL+E  FALR  +S+ A+EFK
Sbjct:   11 KVITNHALDPRIILNPNAGSDRSWVWSAFDFAEGELKETVFALRFADSEIADEFK 65
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BLAST of mRNA_M-pyrifera_M_contig8034.18825.1 vs. uniprot
Match: A0A8J2T1Z3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T1Z3_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.460e-20
Identity = 37/55 (67.27%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:    1 QVICNHVADPRIVLKPNAGSDRSWVWNAFDFTEGELEEITFALRLGNSDSANEFK 165
            ++ICNHV DPRI L+PN GSDRSWVW+A+DF+ GELE+  FA+R GNSD A E+K
Sbjct:  174 KIICNHVVDPRIELEPNVGSDRSWVWSAWDFSSGELEDTIFAIRFGNSDGAKEYK 228
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BLAST of mRNA_M-pyrifera_M_contig8034.18825.1 vs. uniprot
Match: A0A1Z5JPA6_FISSO (Ran-binding protein 1 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPA6_FISSO)

HSP 1 Score: 88.6 bits (218), Expect = 1.820e-20
Identity = 38/55 (69.09%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:    1 QVICNHVADPRIVLKPNAGSDRSWVWNAFDFTEGELEEITFALRLGNSDSANEFK 165
            +VI NHV DP+I L+PN GSDRSWVW+AFDF EGEL+E  FA+R G+SD ANEF+
Sbjct:  108 KVIANHVVDPKIKLEPNVGSDRSWVWSAFDFAEGELKETIFAIRFGDSDIANEFR 162
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BLAST of mRNA_M-pyrifera_M_contig8034.18825.1 vs. uniprot
Match: B8CAX3_THAPS (RanGAP, ran-binding protein 1-like protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CAX3_THAPS)

HSP 1 Score: 87.8 bits (216), Expect = 2.250e-20
Identity = 39/55 (70.91%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 QVICNHVADPRIVLKPNAGSDRSWVWNAFDFTEGELEEITFALRLGNSDSANEFK 165
            +VI NH  DPRIVL+PNAGSDRSWVW+ FDF +GELEE  FALR  NS+ A EFK
Sbjct:  126 KVIANHALDPRIVLEPNAGSDRSWVWSCFDFADGELEEKVFALRFANSEVAGEFK 180
[Close]
BLAST of mRNA_M-pyrifera_M_contig8034.18825.1 vs. uniprot
Match: A0A6S8ZTG3_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8ZTG3_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 3.470e-20
Identity = 38/55 (69.09%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:    1 QVICNHVADPRIVLKPNAGSDRSWVWNAFDFTEGELEEITFALRLGNSDSANEFK 165
            +VI NH  DPRI L+PNAGSDRSWVW+AFDF++GELEE  FALR  +S+ AN+FK
Sbjct:  108 KVIANHAVDPRIKLEPNAGSDRSWVWSAFDFSDGELEETVFALRFADSEIANDFK 162
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8034.18825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KI29_9PHAE8.070e-3092.73RanBD1 domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LNF2_ECTSI5.250e-2892.73RanBD1 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A1Z5JQI1_FISSO1.340e-2169.09RanBD1 domain-containing protein n=1 Tax=Fistulife... [more]
A0A835YXP9_9STRA3.210e-2170.91RanBP1 domain-containing protein n=1 Tax=Tribonema... [more]
A0A7S1VE37_9STRA8.220e-2169.09Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S3Q898_9STRA8.360e-2169.09Hypothetical protein (Fragment) n=2 Tax=Chaetocero... [more]
A0A8J2T1Z3_9STRA1.460e-2067.27Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A1Z5JPA6_FISSO1.820e-2069.09Ran-binding protein 1 n=1 Tax=Fistulifera solaris ... [more]
B8CAX3_THAPS2.250e-2070.91RanGAP, ran-binding protein 1-like protein (Fragme... [more]
A0A6S8ZTG3_9STRA3.470e-2069.09Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8034contigM-pyrifera_M_contig8034:11711..11875 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.6
Seed ortholog evalue2.9e-23
Seed eggNOG ortholog2880.D8LNF2
KEGG koko:K15304,ko:K20282
KEGG Pathwayko05166,map05166
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000054,GO:0000056,GO:0000082,GO:0000226,GO:0000278,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006355,GO:0006403,GO:0006405,GO:0006508,GO:0006511,GO:0006606,GO:0006611,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006979,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0008104,GO:0008150,GO:0008152,GO:0008536,GO:0009056,GO:0009057,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016021,GO:0016043,GO:0017016,GO:0017038,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0022402,GO:0022613,GO:0030163,GO:0031224,GO:0031267,GO:0031323,GO:0031326,GO:0031503,GO:0031935,GO:0031938,GO:0031974,GO:0031981,GO:0032386,GO:0032388,GO:0032879,GO:0032880,GO:0033036,GO:0033043,GO:0033044,GO:0033157,GO:0033365,GO:0033554,GO:0033750,GO:0034504,GO:0034599,GO:0034613,GO:0042221,GO:0042254,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043632,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0045184,GO:0046822,GO:0046824,GO:0046825,GO:0046827,GO:0046907,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051049,GO:0051050,GO:0051128,GO:0051168,GO:0051169,GO:0051170,GO:0051171,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051236,GO:0051252,GO:0051603,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051716,GO:0060255,GO:0060341,GO:0060968,GO:0065007,GO:0070013,GO:0070201,GO:0070727,GO:0070887,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0080090,GO:0090087,GO:0090316,GO:1901181,GO:1901564,GO:1901565,GO:1901575,GO:1902275,GO:1903047,GO:1903506,GO:1903827,GO:1903829,GO:1904951,GO:2000112,GO:2001023,GO:2001024,GO:2001038,GO:2001039,GO:2001141
EggNOG free text desc.3'-5'-exoribonuclease activity involved in mature miRNA 3'-end processing
EggNOG OGsCOG5171@1,KOG0864@2759,KOG2207@1,KOG2207@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816708.946834-CDS-M-pyrifera_M_contig8034:11710..118751622816708.946834-CDS-M-pyrifera_M_contig8034:11710..11875Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8034 11711..11875 +
1692278133.0728023-CDS-M-pyrifera_M_contig8034:11710..118751692278133.0728023-CDS-M-pyrifera_M_contig8034:11710..11875Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8034 11711..11875 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8034.18825.1prot_M-pyrifera_M_contig8034.18825.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8034 11711..11875 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8034.18825.1

>prot_M-pyrifera_M_contig8034.18825.1 ID=prot_M-pyrifera_M_contig8034.18825.1|Name=mRNA_M-pyrifera_M_contig8034.18825.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=55bp
QVICNHVADPRIVLKPNAGSDRSWVWNAFDFTEGELEEITFALRLGNSDS
ANEFK
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mRNA from alignment at M-pyrifera_M_contig8034:11711..11875+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8034.18825.1 ID=mRNA_M-pyrifera_M_contig8034.18825.1|Name=mRNA_M-pyrifera_M_contig8034.18825.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=165bp|location=Sequence derived from alignment at M-pyrifera_M_contig8034:11711..11875+ (Macrocystis pyrifera P11B4 male)
CAGGTTATCTGCAACCACGTGGCAGACCCGCGCATCGTGCTGAAGCCGAA
CGCGGGGTCCGACCGGTCTTGGGTGTGGAACGCGTTCGACTTCACCGAGG
GGGAGCTGGAGGAGATCACCTTCGCTCTCCGCCTCGGAAACTCGGACTCG
GCCAACGAGTTCAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8034:11711..11875+

>mRNA_M-pyrifera_M_contig8034.18825.1 ID=mRNA_M-pyrifera_M_contig8034.18825.1|Name=mRNA_M-pyrifera_M_contig8034.18825.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig8034:11711..11875+ (Macrocystis pyrifera P11B4 male)
CAGGTTATCTGCAACCACGTGGCAGACCCGCGCATCGTGCTGAAGCCGAA
CGCGGGGTCCGACCGGTCTTGGGTGTGGAACGCGTTCGACTTCACCGAGG
GGGAGCTGGAGGAGATCACCTTCGCTCTCCGCCTCGGAAACTCGGACTCG
GCCAACGAGTTCAAGCAGGTTATCTGCAACCACGTGGCAGACCCGCGCAT
CGTGCTGAAGCCGAACGCGGGGTCCGACCGGTCTTGGGTGTGGAACGCGT
TCGACTTCACCGAGGGGGAGCTGGAGGAGATCACCTTCGCTCTCCGCCTC
GGAAACTCGGACTCGGCCAACGAGTTCAAG
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