mRNA_M-pyrifera_M_contig80271.18806.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80271.18806.1
Unique NamemRNA_M-pyrifera_M_contig80271.18806.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig80271.18806.1 vs. uniprot
Match: UPI00155FB900 (interferon-induced protein 44-like n=2 Tax=Acipenser ruthenus TaxID=7906 RepID=UPI00155FB900)

HSP 1 Score: 55.8 bits (133), Expect = 1.310e-5
Identity = 55/209 (26.32%), Postives = 100/209 (47.85%), Query Frame = 1 
Query:   94 TLNILTIGERGSGKSSYLNAMLSTVRQ-----RLTELFHAAPSAGDVTTKQSNLSLEPFGLKMGIRDVPGWTSSSNWPTYMRLLRCIISGRTRDQEDLLPLTEDLLL-RLEARPAASFEHQIHCIVILRSI---EDDRPAFVEKVTSIVQEF-DTRVPVMVLLTKVDTKLAANATLENVHAMEDFEGARLKLAKDVCIEANRVLPLASY 690
            T NIL  G  GSGKSS+LN++LS +R+     R+  +    P A    T+  +L    F  KM I D  G+         + +L+ II G   +        +D+L  ++E         +IHC+V++ S+   E+  PA ++     +    +T VP  +L+T +D  +     L++++   D +     +AK++ I  + +L +++Y
Sbjct:   48 TTNILISGNVGSGKSSFLNSVLSELRREELNGRVQNIQAVRPGAQTSVTQ--HLKCHKFIDKMKIFDTAGFELEKTVNATI-ILKKIIDGEVAEGTKF----DDILKSKMEG-------DKIHCVVLVLSLHTAENMHPALIQFYEQFIGMLTETGVPCQLLVTFIDKLVEKTEDLKSLYRRRDMKQKIENIAKNMRISVSNILVVSNY 242
[Close]
BLAST of mRNA_M-pyrifera_M_contig80271.18806.1 vs. uniprot
Match: UPI0015600AF8 (interferon-induced protein 44-like n=1 Tax=Acipenser ruthenus TaxID=7906 RepID=UPI0015600AF8)

HSP 1 Score: 55.5 bits (132), Expect = 1.890e-5
Identity = 58/209 (27.75%), Postives = 97/209 (46.41%), Query Frame = 1 
Query:   91 HTLNILTIGERGSGKSSYLNAMLSTVRQ-----RLTELFHAAPSAGDVTTKQSNLSLEPFGLKMGIRDVPGWTSSSNWPTYMRLLRCIISGRTRDQEDLLPLTEDLLLRLEARPAASFEHQIHCIVILRSI---EDDRPAFVEKVTSIVQEF-DTRVPVMVLLTKVDTKLAANATLENVHAMEDFEGARLKLAKDVCIEANRVLPLASY 690
            +T NIL  G  GSGKSS+LN++LS +R+     R+  L    P A    T++  L    F  K+ I D  G+         + +L+ II G   +         D +L+ +         +IHC+V++ S+   E+  PA ++     +    +T VP  +L+T VD  +     L+N++   D +     LAK + I    VL +++Y
Sbjct:   59 YTTNILISGSVGSGKSSFLNSVLSELRRKEFNGRVQTLQAVRPGAQTSVTQR--LRCHKFIEKIKIFDTAGFELEKTVNATI-ILKKIIDGEVAEGTKF-----DNILKSKMEG-----DKIHCVVLVLSLHTAENMDPALIQFYEQFIGMLTETEVPCQLLVTFVDKLVEKTEDLKNLYRRRDIKQKIEMLAKKMRISMCNVLVVSNY 254
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80271.18806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI00155FB9001.310e-526.32interferon-induced protein 44-like n=2 Tax=Acipens... [more]
UPI0015600AF81.890e-527.75interferon-induced protein 44-like n=1 Tax=Acipens... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80271contigM-pyrifera_M_contig80271:210..947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size738
Cds size738
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816707.9922643-CDS-M-pyrifera_M_contig80271:209..9471622816707.9922643-CDS-M-pyrifera_M_contig80271:209..947Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80271 210..947 +
1692278132.4626517-CDS-M-pyrifera_M_contig80271:209..9471692278132.4626517-CDS-M-pyrifera_M_contig80271:209..947Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80271 210..947 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80271.18806.1prot_M-pyrifera_M_contig80271.18806.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80271 210..947 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80271.18806.1

>prot_M-pyrifera_M_contig80271.18806.1 ID=prot_M-pyrifera_M_contig80271.18806.1|Name=mRNA_M-pyrifera_M_contig80271.18806.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=246bp
MDWTANGRKVLLRNVKEFRAYAPSLANSSEHTLNILTIGERGSGKSSYLN
AMLSTVRQRLTELFHAAPSAGDVTTKQSNLSLEPFGLKMGIRDVPGWTSS
SNWPTYMRLLRCIISGRTRDQEDLLPLTEDLLLRLEARPAASFEHQIHCI
VILRSIEDDRPAFVEKVTSIVQEFDTRVPVMVLLTKVDTKLAANATLENV
HAMEDFEGARLKLAKDVCIEANRVLPLASYGGGVSYPHIHVEILVL
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mRNA from alignment at M-pyrifera_M_contig80271:210..947+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80271.18806.1 ID=mRNA_M-pyrifera_M_contig80271.18806.1|Name=mRNA_M-pyrifera_M_contig80271.18806.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig80271:210..947+ (Macrocystis pyrifera P11B4 male)
ATGGATTGGACAGCCAACGGCAGGAAAGTACTGCTGAGGAACGTGAAGGA
ATTCCGCGCTTACGCGCCTTCCTTGGCGAACAGCAGTGAACACACTCTCA
ACATCCTGACCATTGGTGAGAGAGGGTCCGGAAAGAGTAGTTACTTGAAC
GCCATGCTTTCGACAGTGCGCCAGCGCCTCACTGAGCTGTTCCACGCCGC
GCCCTCTGCCGGCGATGTTACGACCAAGCAGAGCAACCTCAGCCTCGAGC
CCTTCGGCCTGAAGATGGGTATCCGAGATGTGCCCGGCTGGACCAGTTCC
AGCAACTGGCCCACCTACATGCGCCTTCTGAGGTGCATCATCAGCGGCAG
GACTCGAGACCAAGAGGACCTCTTGCCCTTGACAGAAGATCTTCTCCTTC
GCCTGGAAGCTCGGCCAGCGGCGTCGTTCGAGCACCAGATACATTGCATT
GTCATCTTGAGGTCTATCGAAGATGACAGGCCGGCCTTTGTTGAGAAGGT
GACCAGCATCGTGCAGGAGTTCGACACTCGCGTGCCAGTCATGGTGCTGC
TCACCAAGGTGGATACCAAGCTGGCAGCCAATGCGACTCTGGAGAACGTA
CACGCCATGGAGGACTTTGAGGGAGCACGATTGAAGCTTGCCAAGGATGT
GTGCATTGAGGCCAACCGCGTTCTCCCGTTGGCGAGCTACGGTGGAGGTG
TGAGCTACCCGCACATTCATGTCGAGATTCTGGTGCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80271:210..947+

>mRNA_M-pyrifera_M_contig80271.18806.1 ID=mRNA_M-pyrifera_M_contig80271.18806.1|Name=mRNA_M-pyrifera_M_contig80271.18806.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1476bp|location=Sequence derived from alignment at M-pyrifera_M_contig80271:210..947+ (Macrocystis pyrifera P11B4 male)
ATGGATTGGACAGCCAACGGCAGGAAAGTACTGCTGAGGAACGTGAAGGA
ATTCCGCGCTTACGCGCCTTCCTTGGCGAACAGCAGTGAACACACTCTCA
ACATCCTGACCATTGGTGAGAGAGGGTCCGGAAAGAGTAGTTACTTGAAC
GCCATGCTTTCGACAGTGCGCCAGCGCCTCACTGAGCTGTTCCACGCCGC
GCCCTCTGCCGGCGATGTTACGACCAAGCAGAGCAACCTCAGCCTCGAGC
CCTTCGGCCTGAAGATGGGTATCCGAGATGTGCCCGGCTGGACCAGTTCC
AGCAACTGGCCCACCTACATGCGCCTTCTGAGGTGCATCATCAGCGGCAG
GACTCGAGACCAAGAGGACCTCTTGCCCTTGACAGAAGATCTTCTCCTTC
GCCTGGAAGCTCGGCCAGCGGCGTCGTTCGAGCACCAGATACATTGCATT
GTCATCTTGAGGTCTATCGAAGATGACAGGCCGGCCTTTGTTGAGAAGGT
GACCAGCATCGTGCAGGAGTTCGACACTCGCGTGCCAGTCATGGTGCTGC
TCACCAAGGTGGATACCAAGCTGGCAGCCAATGCGACTCTGGAGAACGTA
CACGCCATGGAGGACTTTGAGGGAGCACGATTGAAGCTTGCCAAGGATGT
GTGCATTGAGGCCAACCGCGTTCTCCCGTTGGCGAGCTACGGTGGAGGTG
TGAGCTACCCGCACATTCATGTCGAGATTCTGGTGCTGATGGATTGGACA
GCCAACGGCAGGAAAGTACTGCTGAGGAACGTGAAGGAATTCCGCGCTTA
CGCGCCTTCCTTGGCGAACAGCAGTGAACACACTCTCAACATCCTGACCA
TTGGTGAGAGAGGGTCCGGAAAGAGTAGTTACTTGAACGCCATGCTTTCG
ACAGTGCGCCAGCGCCTCACTGAGCTGTTCCACGCCGCGCCCTCTGCCGG
CGATGTTACGACCAAGCAGAGCAACCTCAGCCTCGAGCCCTTCGGCCTGA
AGATGGGTATCCGAGATGTGCCCGGCTGGACCAGTTCCAGCAACTGGCCC
ACCTACATGCGCCTTCTGAGGTGCATCATCAGCGGCAGGACTCGAGACCA
AGAGGACCTCTTGCCCTTGACAGAAGATCTTCTCCTTCGCCTGGAAGCTC
GGCCAGCGGCGTCGTTCGAGCACCAGATACATTGCATTGTCATCTTGAGG
TCTATCGAAGATGACAGGCCGGCCTTTGTTGAGAAGGTGACCAGCATCGT
GCAGGAGTTCGACACTCGCGTGCCAGTCATGGTGCTGCTCACCAAGGTGG
ATACCAAGCTGGCAGCCAATGCGACTCTGGAGAACGTACACGCCATGGAG
GACTTTGAGGGAGCACGATTGAAGCTTGCCAAGGATGTGTGCATTGAGGC
CAACCGCGTTCTCCCGTTGGCGAGCTACGGTGGAGGTGTGAGCTACCCGC
ACATTCATGTCGAGATTCTGGTGCTG
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