mRNA_M-pyrifera_M_contig80128.18779.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80128.18779.1
Unique NamemRNA_M-pyrifera_M_contig80128.18779.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig80128.18779.1 vs. uniprot
Match: D8LAZ3_ECTSI (L-type lectin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAZ3_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 1.740e-24
Identity = 48/58 (82.76%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:    1 RFVSFIANNGTRTTEDVRMLANSCASTLRYYERRDDFNFLKSSRVRLGYHDGAVTLEV 174
            +FVSFIANNGTRTTEDVRM ANSCASTLRYY+ RDDFNFLK SR+RLGY+DG ++LEV
Sbjct:  191 QFVSFIANNGTRTTEDVRMAANSCASTLRYYQGRDDFNFLKMSRIRLGYYDGEISLEV 248
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BLAST of mRNA_M-pyrifera_M_contig80128.18779.1 vs. uniprot
Match: A0A835ZHK2_9STRA (L-type lectin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHK2_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 1.790e-5
Identity = 26/59 (44.07%), Postives = 34/59 (57.63%), Query Frame = 1 
Query:    1 RFVSFIANNGTRTTEDVRMLANSCASTLRYYERRDDFNFLKSSRVRLGYH-DGAVTLEV 174
            R +S + NNG +    V      C + LRY+E RDDF  LKSSR+RL +  D  + LEV
Sbjct:   25 RDISMVTNNGRKGGAQVMTELQGCNANLRYWEGRDDFTVLKSSRLRLRFSSDNTLILEV 83
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80128.18779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LAZ3_ECTSI1.740e-2482.76L-type lectin-like domain-containing protein n=2 T... [more]
A0A835ZHK2_9STRA1.790e-544.07L-type lectin-like domain-containing protein n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80128contigM-pyrifera_M_contig80128:113..286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.6
Seed ortholog evalue3.2e-20
Seed eggNOG ortholog2880.D8LAZ3
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs2EVAS@1,2SXBA@2759
Ec32 ortholog descriptionConcanavalin A-like lectin/glucanase domain
Ec32 orthologEc-27_005860.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816706.5416648-CDS-M-pyrifera_M_contig80128:112..2861622816706.5416648-CDS-M-pyrifera_M_contig80128:112..286Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80128 113..286 -
1692278131.6535435-CDS-M-pyrifera_M_contig80128:112..2861692278131.6535435-CDS-M-pyrifera_M_contig80128:112..286Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80128 113..286 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80128.18779.1prot_M-pyrifera_M_contig80128.18779.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80128 113..286 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80128.18779.1

>prot_M-pyrifera_M_contig80128.18779.1 ID=prot_M-pyrifera_M_contig80128.18779.1|Name=mRNA_M-pyrifera_M_contig80128.18779.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=58bp
RFVSFIANNGTRTTEDVRMLANSCASTLRYYERRDDFNFLKSSRVRLGYH
DGAVTLEV
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mRNA from alignment at M-pyrifera_M_contig80128:113..286-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80128.18779.1 ID=mRNA_M-pyrifera_M_contig80128.18779.1|Name=mRNA_M-pyrifera_M_contig80128.18779.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=174bp|location=Sequence derived from alignment at M-pyrifera_M_contig80128:113..286- (Macrocystis pyrifera P11B4 male)
AGGTTTGTGTCGTTTATTGCGAACAACGGGACTCGGACGACGGAGGACGT
GCGCATGTTAGCCAACAGCTGCGCATCCACCCTCCGCTACTACGAGCGGA
GAGACGACTTTAACTTCCTCAAATCTTCGCGCGTGCGCCTCGGCTACCAC
GATGGCGCTGTCACCCTGGAGGTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80128:113..286-

>mRNA_M-pyrifera_M_contig80128.18779.1 ID=mRNA_M-pyrifera_M_contig80128.18779.1|Name=mRNA_M-pyrifera_M_contig80128.18779.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig80128:113..286- (Macrocystis pyrifera P11B4 male)
AGGTTTGTGTCGTTTATTGCGAACAACGGGACTCGGACGACGGAGGACGT
GCGCATGTTAGCCAACAGCTGCGCATCCACCCTCCGCTACTACGAGCGGA
GAGACGACTTTAACTTCCTCAAATCTTCGCGCGTGCGCCTCGGCTACCAC
GATGGCGCTGTCACCCTGGAGGTAAGGTTTGTGTCGTTTATTGCGAACAA
CGGGACTCGGACGACGGAGGACGTGCGCATGTTAGCCAACAGCTGCGCAT
CCACCCTCCGCTACTACGAGCGGAGAGACGACTTTAACTTCCTCAAATCT
TCGCGCGTGCGCCTCGGCTACCACGATGGCGCTGTCACCCTGGAGGTA
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