mRNA_M-pyrifera_M_contig7984.18731.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7984.18731.1
Unique NamemRNA_M-pyrifera_M_contig7984.18731.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig7984.18731.1 vs. uniprot
Match: D7FXA2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXA2_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 7.630e-55
Identity = 84/87 (96.55%), Postives = 86/87 (98.85%), Query Frame = 1 
Query:    4 AADRFNMNRSWDHIQNKYIGTGHSDTTKFEWATNQHRDSIASHIGHSDLLTYFAVAENNAVGRVRYQLLEKMLQPCGPPPAKDDDDV 264
            AADRFNMNRSWDHIQNKY+GTGHSDTTKFEWATNQHRDSIASHIGHSDLL YFAVAENNAVGRVRYQLLEKMLQPCGPPPAKDDDD+
Sbjct:   36 AADRFNMNRSWDHIQNKYVGTGHSDTTKFEWATNQHRDSIASHIGHSDLLMYFAVAENNAVGRVRYQLLEKMLQPCGPPPAKDDDDI 122
[Close]
BLAST of mRNA_M-pyrifera_M_contig7984.18731.1 vs. uniprot
Match: A0A662XDD1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XDD1_9STRA)

HSP 1 Score: 156 bits (394), Expect = 1.480e-43
Identity = 65/86 (75.58%), Postives = 79/86 (91.86%), Query Frame = 1 
Query:    1 QAADRFNMNRSWDHIQNKYIGTGHSDTTKFEWATNQHRDSIASHIGHSDLLTYFAVAENNAVGRVRYQLLEKMLQPCGPPPAKDDD 258
            QAADRFN+NR W+H+Q KY+GTGH+DTTKFEWA NQHRD++ASH+GHSD+L +FAVAEN A+GRVRY +LEKMLQPCGPPP K++D
Sbjct:   52 QAADRFNVNRQWEHLQAKYVGTGHADTTKFEWAVNQHRDTLASHLGHSDMLAFFAVAENEAIGRVRYNMLEKMLQPCGPPPQKEED 137
[Close]
BLAST of mRNA_M-pyrifera_M_contig7984.18731.1 vs. uniprot
Match: H3G531_PHYRM (Splicing factor subunit n=20 Tax=Oomycota TaxID=4762 RepID=H3G531_PHYRM)

HSP 1 Score: 154 bits (389), Expect = 1.760e-43
Identity = 64/86 (74.42%), Postives = 79/86 (91.86%), Query Frame = 1 
Query:    1 QAADRFNMNRSWDHIQNKYIGTGHSDTTKFEWATNQHRDSIASHIGHSDLLTYFAVAENNAVGRVRYQLLEKMLQPCGPPPAKDDD 258
            QAADRFN+NR W+H+Q KY+GTGH+DTTKFEWA NQHRD++ASH+GHSD+L YFAVAEN ++GRVRY +LEKMLQPCGPPP K+++
Sbjct:    2 QAADRFNINRQWEHLQAKYVGTGHADTTKFEWAVNQHRDTLASHLGHSDMLAYFAVAENESMGRVRYNMLEKMLQPCGPPPQKEEE 87
[Close]
BLAST of mRNA_M-pyrifera_M_contig7984.18731.1 vs. uniprot
Match: A0A6G0XHV2_9STRA (Splicing factor subunit n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XHV2_9STRA)

HSP 1 Score: 152 bits (383), Expect = 1.340e-42
Identity = 63/84 (75.00%), Postives = 77/84 (91.67%), Query Frame = 1 
Query:    4 AADRFNMNRSWDHIQNKYIGTGHSDTTKFEWATNQHRDSIASHIGHSDLLTYFAVAENNAVGRVRYQLLEKMLQPCGPPPAKDD 255
            AADRFN+NR W+H+Q+KY+GTGH+DT+KFEWA NQHRD++ASHIGHSD+L YFAVAEN ++GRVR+ +LEKMLQPCGPPP K D
Sbjct:    2 AADRFNINRQWEHLQSKYVGTGHADTSKFEWAVNQHRDTLASHIGHSDMLAYFAVAENESIGRVRFNMLEKMLQPCGPPPKKQD 85
[Close]
BLAST of mRNA_M-pyrifera_M_contig7984.18731.1 vs. uniprot
Match: A0A8J5IQX8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IQX8_9STRA)

HSP 1 Score: 152 bits (384), Expect = 3.570e-42
Identity = 63/85 (74.12%), Postives = 78/85 (91.76%), Query Frame = 1 
Query:    4 AADRFNMNRSWDHIQNKYIGTGHSDTTKFEWATNQHRDSIASHIGHSDLLTYFAVAENNAVGRVRYQLLEKMLQPCGPPPAKDDD 258
            AADRFN+NR W+H+Q KY+GTGH+DTTKFEWA NQHRD++ASH+GHSD+L YFAVAEN ++GRVRY +LEKMLQPCGPPP K+++
Sbjct:   45 AADRFNINRQWEHLQAKYVGTGHADTTKFEWAVNQHRDTLASHLGHSDMLAYFAVAENESMGRVRYNMLEKMLQPCGPPPQKEEE 129
[Close]
BLAST of mRNA_M-pyrifera_M_contig7984.18731.1 vs. uniprot
Match: A0A1W0A9Q9_9STRA (Splicing factor subunit n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9Q9_9STRA)

HSP 1 Score: 150 bits (380), Expect = 3.760e-42
Identity = 62/85 (72.94%), Postives = 77/85 (90.59%), Query Frame = 1 
Query:    4 AADRFNMNRSWDHIQNKYIGTGHSDTTKFEWATNQHRDSIASHIGHSDLLTYFAVAENNAVGRVRYQLLEKMLQPCGPPPAKDDD 258
            AADRFN+NR W+H+Q KY+GTGH+DT+KFEWA NQHRD++ASHIGH D+L YFAVAEN ++GRVRY +LEKM+QPCGPPP K++D
Sbjct:    2 AADRFNINRQWEHLQAKYVGTGHADTSKFEWAVNQHRDTLASHIGHKDMLAYFAVAENESIGRVRYAMLEKMVQPCGPPPIKEED 86
[Close]
BLAST of mRNA_M-pyrifera_M_contig7984.18731.1 vs. uniprot
Match: K3WSC6_GLOUD (Splicing factor subunit n=4 Tax=Pythiaceae TaxID=4782 RepID=K3WSC6_GLOUD)

HSP 1 Score: 150 bits (378), Expect = 7.470e-42
Identity = 62/85 (72.94%), Postives = 77/85 (90.59%), Query Frame = 1 
Query:    4 AADRFNMNRSWDHIQNKYIGTGHSDTTKFEWATNQHRDSIASHIGHSDLLTYFAVAENNAVGRVRYQLLEKMLQPCGPPPAKDDD 258
            AADRFN+NR W+H+Q KY+GTGH+DTTKFEWA NQHRD++ASH+GH D+L+YFA AEN AVGRV++ +LEKMLQPCGPPP K+D+
Sbjct:    2 AADRFNINRQWEHLQAKYVGTGHADTTKFEWAVNQHRDTLASHLGHYDMLSYFAAAENEAVGRVKFNMLEKMLQPCGPPPQKEDE 86
[Close]
BLAST of mRNA_M-pyrifera_M_contig7984.18731.1 vs. uniprot
Match: W7TXH4_9STRA (Splicing factor subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXH4_9STRA)

HSP 1 Score: 150 bits (378), Expect = 8.170e-42
Identity = 67/87 (77.01%), Postives = 77/87 (88.51%), Query Frame = 1 
Query:    4 AADRFNMNRSWDHIQNKYIGTGHSDTTKFEWATNQHRDSIASHIGHSDLLTYFAVAENNAVGRVRYQLLEKMLQPCGPPPA-KDDDD 261
            AADRFN+NRSW+H+QNKY+GTGH D TK EW TNQHRD+ A+H+GH D L Y AVA+N+AVGRVRYQLLEKMLQPCGPPPA KDD+D
Sbjct:    2 AADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQLLEKMLQPCGPPPAAKDDED 88
[Close]
BLAST of mRNA_M-pyrifera_M_contig7984.18731.1 vs. uniprot
Match: A0A835ZDN9_9STRA (Splicing factor subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDN9_9STRA)

HSP 1 Score: 150 bits (378), Expect = 8.170e-42
Identity = 63/86 (73.26%), Postives = 78/86 (90.70%), Query Frame = 1 
Query:    4 AADRFNMNRSWDHIQNKYIGTGHSDTTKFEWATNQHRDSIASHIGHSDLLTYFAVAENNAVGRVRYQLLEKMLQPCGPPPAKDDDD 261
            AADRFN N+SWDHIQ K++GTGH DT+KFEWATNQHRD+IAS++GHSD++ Y++VA+N + GRVRY L+EKMLQPCGPPP KDD+D
Sbjct:    2 AADRFNFNKSWDHIQAKFVGTGHGDTSKFEWATNQHRDTIASNVGHSDIIDYYSVAQNLSQGRVRYNLMEKMLQPCGPPPPKDDED 87
[Close]
BLAST of mRNA_M-pyrifera_M_contig7984.18731.1 vs. uniprot
Match: F0W9E9_9STRA (Splicing factor subunit n=2 Tax=Albugo TaxID=65356 RepID=F0W9E9_9STRA)

HSP 1 Score: 148 bits (374), Expect = 2.950e-41
Identity = 61/85 (71.76%), Postives = 77/85 (90.59%), Query Frame = 1 
Query:    4 AADRFNMNRSWDHIQNKYIGTGHSDTTKFEWATNQHRDSIASHIGHSDLLTYFAVAENNAVGRVRYQLLEKMLQPCGPPPAKDDD 258
            AADRFN+NR W+H+Q KY+GTGH+DTTKFEWA NQHRD++ASHIGH+D+L YFAVAEN ++ RVRY +LE+MLQPCGPPP K+++
Sbjct:    2 AADRFNVNRQWEHLQAKYVGTGHADTTKFEWALNQHRDTLASHIGHADMLLYFAVAENESIARVRYNMLERMLQPCGPPPQKEEE 86
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7984.18731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXA2_ECTSI7.630e-5596.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A662XDD1_9STRA1.480e-4375.58Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
H3G531_PHYRM1.760e-4374.42Splicing factor subunit n=20 Tax=Oomycota TaxID=47... [more]
A0A6G0XHV2_9STRA1.340e-4275.00Splicing factor subunit n=1 Tax=Aphanomyces euteic... [more]
A0A8J5IQX8_9STRA3.570e-4274.12Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
A0A1W0A9Q9_9STRA3.760e-4272.94Splicing factor subunit n=1 Tax=Thraustotheca clav... [more]
K3WSC6_GLOUD7.470e-4272.94Splicing factor subunit n=4 Tax=Pythiaceae TaxID=4... [more]
W7TXH4_9STRA8.170e-4277.01Splicing factor subunit n=2 Tax=Monodopsidaceae Ta... [more]
A0A835ZDN9_9STRA8.170e-4273.26Splicing factor subunit n=1 Tax=Tribonema minus Ta... [more]
F0W9E9_9STRA2.950e-4171.76Splicing factor subunit n=2 Tax=Albugo TaxID=65356... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7984contigM-pyrifera_M_contig7984:2577..5258 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score173.7
Seed ortholog evalue3.5e-41
Seed eggNOG ortholog2880.D7FXA2
Preferred nameSF3B5
KEGG koko:K08790,ko:K12832,ko:K19485
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005686,GO:0005689,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007276,GO:0007283,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0010468,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019953,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044703,GO:0045292,GO:0046483,GO:0048232,GO:0048609,GO:0050789,GO:0051704,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071005,GO:0071011,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097525,GO:0120114,GO:1901360,GO:1990904
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsKOG3485@1,KOG3485@2759
EC2.7.11.1
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03000,ko03041
Exons3
Model size1050
Cds size246
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7984.18731.1prot_M-pyrifera_M_contig7984.18731.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7984 2598..4475 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816702.1719918-UTR-M-pyrifera_M_contig7984:2576..25971622816702.1719918-UTR-M-pyrifera_M_contig7984:2576..2597Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7984 2577..2597 +
1692278128.6309547-UTR-M-pyrifera_M_contig7984:2576..25971692278128.6309547-UTR-M-pyrifera_M_contig7984:2576..2597Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7984 2577..2597 +
1622816702.2211552-UTR-M-pyrifera_M_contig7984:4475..52581622816702.2211552-UTR-M-pyrifera_M_contig7984:4475..5258Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7984 4476..5258 +
1692278128.6701238-UTR-M-pyrifera_M_contig7984:4475..52581692278128.6701238-UTR-M-pyrifera_M_contig7984:4475..5258Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7984 4476..5258 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816702.185604-CDS-M-pyrifera_M_contig7984:2597..26651622816702.185604-CDS-M-pyrifera_M_contig7984:2597..2665Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7984 2598..2665 +
1692278128.6425352-CDS-M-pyrifera_M_contig7984:2597..26651692278128.6425352-CDS-M-pyrifera_M_contig7984:2597..2665Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7984 2598..2665 +
1622816702.1977432-CDS-M-pyrifera_M_contig7984:3296..34201622816702.1977432-CDS-M-pyrifera_M_contig7984:3296..3420Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7984 3297..3420 +
1692278128.6517155-CDS-M-pyrifera_M_contig7984:3296..34201692278128.6517155-CDS-M-pyrifera_M_contig7984:3296..3420Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7984 3297..3420 +
1622816702.209524-CDS-M-pyrifera_M_contig7984:4421..44751622816702.209524-CDS-M-pyrifera_M_contig7984:4421..4475Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7984 4422..4475 +
1692278128.6609814-CDS-M-pyrifera_M_contig7984:4421..44751692278128.6609814-CDS-M-pyrifera_M_contig7984:4421..4475Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7984 4422..4475 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7984.18731.1

>prot_M-pyrifera_M_contig7984.18731.1 ID=prot_M-pyrifera_M_contig7984.18731.1|Name=mRNA_M-pyrifera_M_contig7984.18731.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=82bp
MNRSWDHIQNKYIGTGHSDTTKFEWATNQHRDSIASHIGHSDLLTYFAVA
ENNAVGRVRYQLLEKMLQPCGPPPAKDDDDV*
back to top

mRNA from alignment at M-pyrifera_M_contig7984:2577..5258+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7984.18731.1 ID=mRNA_M-pyrifera_M_contig7984.18731.1|Name=mRNA_M-pyrifera_M_contig7984.18731.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2682bp|location=Sequence derived from alignment at M-pyrifera_M_contig7984:2577..5258+ (Macrocystis pyrifera P11B4 male)
CAGGCGGCCGACCGGTTCAACATGAACCGGAGTTGGGACCACATCCAGAA
CAAATACATCGGCACTGGCCACTCCGACACCACCAAATTGTGAGTATGAG
AGCAGCGTAACCTTAATACAACTCCTATAACGAGCCCTTTCCCCCCCCCT
TCTAATTGCCTCTCTACCGGCCGTTGAAATGTCCCCCTGTCTCCCGTCGA
CCCCCCCCCTACCCCGCGTTGAATTTCCCTCTCGTCTTCTGTCGAAAGGT
CCCGTTCCCCCCCATTGAAATGCCCCTATCCCTTCGGTCTAAATCCCCCC
GACCGTCCCCTTCAAAAGGCCCCCTTCCGCCCCCTGCTTTATGCTGCCCT
TCTATACCTCGCCCCGACTAATCCGCCCTTTTCATTCAAATCCCCCTCTC
CCCGTTGAAGTCCCCCCTCCCCCCTCGCTGATTCCCCTTGGTTGAAAACC
CCATATCTCCTCCTTTGTCATGCCTCCCTCCGCCCCCTGCCTTACCGTGC
CCCGATTGTTTCGCCCTTGTCGTTGAAATCCCCCCTTCTCCCCTCTGCTG
AAAGGCCCCCCTTGTCTTCTGTCGAAAGCCCCCCTTCCCCCCCGCCCCCC
CGGTGAATTGCCCTTTGTCGCCCTTTGTTGAAGTCCCTCCTCCTTCCGCC
CCCTGCCCTACCCTACCCTACCCCTGCCCTGTCTCCATGATGCGCGACCC
CAATTTTTTGGCGTCGCCAGCGAGTGGGCTACGAATCAGCACCGGGACTC
GATCGCGTCGCACATCGGACACAGCGACTTGCTGACGTACTTCGCGGTGG
CGGAGAACAACGCCGTAGGCCGCGTGCGCTACCAGCTGCTCGAGGTGTGG
TGACATGCAGCTATTGATAGTAGACAGATTTAGGCATGAGTGGATATTAT
GTACCGTAGCTGTCTTGCACCAAGGTAATGCTACACTCCGGGCGAAGGTA
TAAGGAATGGTTATACAAATTATCAAGACCCAACGGTTCTTTATATTTAC
GTCGAGAGTGATATACAAGTTTTTTTTTTTCACATTTTTTTGCGTAGATA
TAATAAATGTACTACTGTGTTGGGAAAAGCACGCCGATGCTCTCAGAGCT
CGATTTTTTTTTTTCCAAGACCAGGTTTCGAGCCGTTTGCAAGTTGCCTC
GCGATGAGTTCCACCTCTCGGTCCGCTGTTTCCGCATGGTGCCTGGTCGT
GCTCGCCTGCCCCGACTCCGCCGGGGGTGGCCGTGCTCGCGCCGTGTCCC
GGCGGGGCTTGCTGTTTTCACACATTTTTTCAGGCCATCTGCTGCTTTTT
TACCTGATCCCCTAGACGGTACCGCCTCATCATCACCGTAATATCCGTGT
TAGGAGGTCAGGCTGCTATAATGTACTTTTTCGTTGCTGACCTCCGAGAG
CGTTGGTATGCCACCCAACCCACCTCGATGTGGCTACGCACCCGAAAGCC
TTAAAGACGAGATGCACCTGCTGGGGAACTACAGTATACCGTCCCGTTTG
TTGGCGCTTTCGTGGCGATTTCATGTTTTCAGTGCATATGGATCGAACGC
GCCTGGTACCTGGTATGTACTATGCGTTGTGCGTTCTGAGCAATGCCGTC
GTCCGCGAGCGCAACCAGCTGCTCGAGGTGTGATGACATGACCGGGATAG
GCGGGCATGAATTAAATATGGGGTACGTAGCTCTCGCTGTGCTGGTGGAT
GTTTGATATTTGCAACTGCCATCAACTCCTGTGTGCGCTGGTGGACAGCC
GGGTTTTTTTTTTCTTGTACAAAAAAAAATGTCCCGCTTTCGTGTGAGCC
CCCTCCCCTCCCCCCCCCTGCTCTTTCACTCCCTTGAAAATTCAGAAAAT
GCTCCAGCCGTGCGGACCACCCCCAGCGAAGGACGACGATGATGTATGAC
CACACGCAACAGAAAACTCGTCCTGGAGGGCAGTGGTACGCAGCAAAACA
TCCTATTAACTGGAGAGCCGGTCTTGCTGGGTGCATCAAGCCCTCATTCG
GCCTTGCTATACTAGGTTTAGTCTAGGAGGGGCGATCAATCAAAGGGGCC
AAACCGCGATCTGCTACTATTAGTAGCAGCGTCTACGGTAGTTGGTGCTA
CTTGCGCCGACCGGGGGCCCTTCTCCGCTAGAAGTTGGTAGCCCGGCCTG
GCCTGGTGCGGCCTGGCATGTCCTGGCTGGCGGCAAACAAAGGCCATGAC
GAGAACGTACAGTAGTTTCAGCACACAGGATAGTCTAACGGCGTACGTAC
TGGCGTGTACTGGTATGTACAGACAGATGAAGAGGGGAGGAGGGGGTTGT
CAAGCCGGGCTATTTCGGTAGCGATGCATCTTGGGGAGTTTATTTTTTTG
CGTCATGGGTAGAATTCCTCCAGTGGCATCCCCCCCCCTCTGCAAGGGGC
CGTTTCGGGCGGGTACATAGTACCATCGCGGAAAGCGCGAGGCTATGACT
ACGCAAAATAACGATGGCAGTCCACAAGCTGTGGGAATGCCCAACCCCTG
TATATACATGCTCGCTACAAATCAAGGCAGTCACCGGACAGACACCTGGC
CTGTGACCACGTCTTGTTCAGGGTTCCTGAAACGCTGCTCCTGAAAGCTG
GGGTAGGAAGTTGAGGTAGTGGATATAAAAGAGAGAAGCAAATGTCGTTA
AGCTCGCGCAGGCTGCTATCTCTATTCCGCCG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig7984:2577..5258+

>mRNA_M-pyrifera_M_contig7984.18731.1 ID=mRNA_M-pyrifera_M_contig7984.18731.1|Name=mRNA_M-pyrifera_M_contig7984.18731.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig7984:2577..5258+ (Macrocystis pyrifera P11B4 male)
ATGAACCGGAGTTGGGACCACATCCAGAACAAATACATCGGCACTGGCCA
CTCCGACACCACCAAATTATGAACCGGAGTTGGGACCACATCCAGAACAA
ATACATCGGCACTGGCCACTCCGACACCACCAAATTCGAGTGGGCTACGA
ATCAGCACCGGGACTCGATCGCGTCGCACATCGGACACAGCGACTTGCTG
ACGTACTTCGCGGTGGCGGAGAACAACGCCGTAGGCCGCGTGCGCTACCA
GCTGCTCGAGCGAGTGGGCTACGAATCAGCACCGGGACTCGATCGCGTCG
CACATCGGACACAGCGACTTGCTGACGTACTTCGCGGTGGCGGAGAACAA
CGCCGTAGGCCGCGTGCGCTACCAGCTGCTCGAGAAAATGCTCCAGCCGT
GCGGACCACCCCCAGCGAAGGACGACGATGATGTATGAAAAATGCTCCAG
CCGTGCGGACCACCCCCAGCGAAGGACGACGATGATGTATGA
back to top