mRNA_M-pyrifera_M_contig78965.18553.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78965.18553.1
Unique NamemRNA_M-pyrifera_M_contig78965.18553.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig78965.18553.1 vs. uniprot
Match: A0A5A8C5H9_CAFRO (PALP domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C5H9_CAFRO)

HSP 1 Score: 114 bits (284), Expect = 5.400e-28
Identity = 59/97 (60.82%), Postives = 71/97 (73.20%), Query Frame = 1
Query:   19 GKTPLLRLRSLDEVVGARLLGKAEFLSVGGSVKDRAAAFMVLGAEQDGRLPRGGGGVVVEATGGNTGVSLVLAAHARGHKTVMAVPSGISKGKIDLM 309
            GKTPLL +RSL +  G R++ KAE L+ GGSVKDR AA ++L AEQ G LP GGGG VVE TGGNTGV + + A ARGH+ V+ +P  ISK KI LM
Sbjct:   60 GKTPLLEIRSLSDATGCRIVAKAEHLNPGGSVKDRPAARIILLAEQRGDLPAGGGGTVVEGTGGNTGVGMAMVAAARGHRAVLVMPDSISKDKIALM 156          
BLAST of mRNA_M-pyrifera_M_contig78965.18553.1 vs. uniprot
Match: A0A5A8CA53_CAFRO (PALP domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CA53_CAFRO)

HSP 1 Score: 114 bits (284), Expect = 3.220e-27
Identity = 59/97 (60.82%), Postives = 71/97 (73.20%), Query Frame = 1
Query:   19 GKTPLLRLRSLDEVVGARLLGKAEFLSVGGSVKDRAAAFMVLGAEQDGRLPRGGGGVVVEATGGNTGVSLVLAAHARGHKTVMAVPSGISKGKIDLM 309
            GKTPLL +RSL +  G R++ KAE L+ GGSVKDR AA ++L AEQ G LP GGGG VVE TGGNTGV + + A ARGH+ V+ +P  ISK KI LM
Sbjct:   60 GKTPLLEIRSLSDATGCRIVAKAEHLNPGGSVKDRPAARIILLAEQRGDLPAGGGGTVVEGTGGNTGVGMAMVAAARGHRAVLVMPDSISKDKIALM 156          
BLAST of mRNA_M-pyrifera_M_contig78965.18553.1 vs. uniprot
Match: K9SHG7_9CYAN (Cysteine synthase n=1 Tax=Pseudanabaena sp. PCC 7367 TaxID=82654 RepID=K9SHG7_9CYAN)

HSP 1 Score: 105 bits (263), Expect = 2.810e-25
Identity = 54/98 (55.10%), Postives = 72/98 (73.47%), Query Frame = 1
Query:   19 GKTPLLRLRSLDEVVGARLLGKAEFLSVGGSVKDRAAAFMVLGAEQDGRLPRGGGGVVVEATGGNTGVSLVLAAHARGHKTVMAVPSGISKGKIDLMR 312
            G TPL+++ SL    G  +LGKAEFL+ GGSVKDRAA FMV+ AEQDG L  GG   +VE T GNTG+ L L A+ARG+++++ +P+  S+ KIDL+R
Sbjct:   14 GNTPLIKIESLSAATGCNILGKAEFLNPGGSVKDRAALFMVMQAEQDGLLKPGG--AIVEGTAGNTGIGLTLVANARGYRSIIVMPNNQSQEKIDLLR 109          
BLAST of mRNA_M-pyrifera_M_contig78965.18553.1 vs. uniprot
Match: UPI00167FEEE3 (cysteine synthase A n=1 Tax=Pseudanabaena sp. FACHB-723 TaxID=2692860 RepID=UPI00167FEEE3)

HSP 1 Score: 105 bits (261), Expect = 5.500e-25
Identity = 55/103 (53.40%), Postives = 73/103 (70.87%), Query Frame = 1
Query:    4 FEQGDGKTPLLRLRSLDEVVGARLLGKAEFLSVGGSVKDRAAAFMVLGAEQDGRLPRGGGGVVVEATGGNTGVSLVLAAHARGHKTVMAVPSGISKGKIDLMR 312
            F +  G TPL+++ SL E  G  +LGKAEFL+ GGSVKDRAA +MVL AE+ G L  GG   +VE T GNTG+ L L A+ARG++ V+ +P+  S+ KIDL+R
Sbjct:    9 FTESVGNTPLIKIESLSEATGCTILGKAEFLNPGGSVKDRAALYMVLEAERTGALKAGG--TIVEGTAGNTGIGLSLVANARGYRAVIVMPNNQSQEKIDLLR 109          
BLAST of mRNA_M-pyrifera_M_contig78965.18553.1 vs. uniprot
Match: K9SUV2_9SYNE (Cysteine synthase n=1 Tax=Synechococcus sp. PCC 7502 TaxID=1173263 RepID=K9SUV2_9SYNE)

HSP 1 Score: 103 bits (258), Expect = 1.480e-24
Identity = 55/103 (53.40%), Postives = 72/103 (69.90%), Query Frame = 1
Query:    4 FEQGDGKTPLLRLRSLDEVVGARLLGKAEFLSVGGSVKDRAAAFMVLGAEQDGRLPRGGGGVVVEATGGNTGVSLVLAAHARGHKTVMAVPSGISKGKIDLMR 312
            F    G TPL+ + SL  + G ++LGKAEFL+ GGSVKDRAA FMV  AE+DG+L  GG   +VE T GNTG+ L L A+A+G++ V+ +PS  S  KIDL+R
Sbjct:    9 FAGAIGNTPLIEIPSLSAITGCKILGKAEFLNPGGSVKDRAALFMVEQAEKDGKLKAGG--TIVEGTAGNTGIGLALVANAKGYRCVIVMPSNQSPEKIDLLR 109          
BLAST of mRNA_M-pyrifera_M_contig78965.18553.1 vs. uniprot
Match: A0A8I1R984_9BURK (Cysteine synthase A n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A8I1R984_9BURK)

HSP 1 Score: 103 bits (258), Expect = 1.510e-24
Identity = 55/98 (56.12%), Postives = 71/98 (72.45%), Query Frame = 1
Query:   19 GKTPLLRLRSLDEVVGARLLGKAEFLSVGGSVKDRAAAFMVLGAEQDGRLPRGGGGVVVEATGGNTGVSLVLAAHARGHKTVMAVPSGISKGKIDLMR 312
            G TPL+RLR   E+ G  +LGKAEFL+ GGSVKDRA  +M+L AEQ G L  GG  +VVE T GNTG+ L L A+ARG++TV+ +P+  S+ K DL+R
Sbjct:   13 GNTPLIRLRKASELTGCEILGKAEFLNPGGSVKDRAGLYMILDAEQRGVLRPGG--IVVEGTAGNTGIGLTLVANARGYRTVIVIPATQSQEKKDLLR 108          
BLAST of mRNA_M-pyrifera_M_contig78965.18553.1 vs. uniprot
Match: UPI001BA900C8 (cysteine synthase A n=1 Tax=Roseomonas arctica TaxID=1509237 RepID=UPI001BA900C8)

HSP 1 Score: 103 bits (257), Expect = 2.080e-24
Identity = 52/103 (50.49%), Postives = 71/103 (68.93%), Query Frame = 1
Query:    4 FEQGDGKTPLLRLRSLDEVVGARLLGKAEFLSVGGSVKDRAAAFMVLGAEQDGRLPRGGGGVVVEATGGNTGVSLVLAAHARGHKTVMAVPSGISKGKIDLMR 312
            F    G TPL+RLR   E  G  +LGKAEF++ GGSVKDRAA  ++  AE+DGRL  G  GV+VE T GNTG+ + L A+ARG+++++ +P   S+ KID +R
Sbjct:    9 FAGAVGNTPLIRLRRASEATGCEILGKAEFMNPGGSVKDRAALGIIEAAERDGRLTPGKPGVIVEGTAGNTGIGITLVANARGYRSIIVMPETQSREKIDFLR 111          
BLAST of mRNA_M-pyrifera_M_contig78965.18553.1 vs. uniprot
Match: A0A0L0DSI2_THETB (Cysteine synthase n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DSI2_THETB)

HSP 1 Score: 104 bits (259), Expect = 2.080e-24
Identity = 54/104 (51.92%), Postives = 70/104 (67.31%), Query Frame = 1
Query:    1 SFEQGDGKTPLLRLRSLDEVVGARLLGKAEFLSVGGSVKDRAAAFMVLGAEQDGRLPRGGGGVVVEATGGNTGVSLVLAAHARGHKTVMAVPSGISKGKIDLMR 312
            +FEQ  G+TPLLRLR   E  G  +  KAE+ + GGSVKDR A  M+LGAE+DG L RG  GV+VE T GNTG+ L LA  A G+K ++ + S  S+ K D++R
Sbjct:   26 AFEQAVGQTPLLRLRGASEAAGCNVYAKAEYANPGGSVKDRPALSMILGAERDGHLVRGEEGVIVEGTAGNTGIGLALAGRALGYKVLICIASSQSQEKKDMLR 129          
BLAST of mRNA_M-pyrifera_M_contig78965.18553.1 vs. uniprot
Match: L8MWJ1_9CYAN (Cysteine synthase n=15 Tax=Pseudanabaena TaxID=1152 RepID=L8MWJ1_9CYAN)

HSP 1 Score: 103 bits (256), Expect = 2.950e-24
Identity = 54/103 (52.43%), Postives = 72/103 (69.90%), Query Frame = 1
Query:    4 FEQGDGKTPLLRLRSLDEVVGARLLGKAEFLSVGGSVKDRAAAFMVLGAEQDGRLPRGGGGVVVEATGGNTGVSLVLAAHARGHKTVMAVPSGISKGKIDLMR 312
            F    G TPL+++ SL E  G  +LGKAE L+ GGSVKDRAA FMVL AE+ G +  GG   +VE T GNTG+ L L A+ARG+++V+ +PS  S+ KIDL++
Sbjct:    9 FANSVGNTPLIKIESLSEATGCTILGKAELLNPGGSVKDRAALFMVLEAEKAGTIKAGG--TIVEGTAGNTGIGLALVANARGYRSVIVMPSNQSQEKIDLLK 109          
BLAST of mRNA_M-pyrifera_M_contig78965.18553.1 vs. uniprot
Match: A0A6A4YYQ6_9STRA (PALP domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4YYQ6_9STRA)

HSP 1 Score: 100 bits (248), Expect = 4.850e-24
Identity = 52/98 (53.06%), Postives = 69/98 (70.41%), Query Frame = 1
Query:   19 GKTPLLRLRSLDEVVGARLLGKAEFLSVGGSVKDRAAAFMVLGAEQDGRLPRGGGGVVVEATGGNTGVSLVLAAHARGHKTVMAVPSGISKGKIDLMR 312
            G TPLL ++SL  + G R+L KAEF++  GSVKDRAA F++  AE  G+L  GG  +VVEATGGNTGV L + A A+G++T+  +P   S  KIDLM+
Sbjct:   44 GNTPLLEIKSLSNLTGCRILAKAEFMNPSGSVKDRAAKFLIEDAEASGQLQPGG--IVVEATGGNTGVGLAIVAAAKGYRTIFTMPDKTSAEKIDLMK 139          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78965.18553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8C5H9_CAFRO5.400e-2860.82PALP domain-containing protein n=2 Tax=Cafeteria r... [more]
A0A5A8CA53_CAFRO3.220e-2760.82PALP domain-containing protein n=2 Tax=Cafeteria r... [more]
K9SHG7_9CYAN2.810e-2555.10Cysteine synthase n=1 Tax=Pseudanabaena sp. PCC 73... [more]
UPI00167FEEE35.500e-2553.40cysteine synthase A n=1 Tax=Pseudanabaena sp. FACH... [more]
K9SUV2_9SYNE1.480e-2453.40Cysteine synthase n=1 Tax=Synechococcus sp. PCC 75... [more]
A0A8I1R984_9BURK1.510e-2456.12Cysteine synthase A n=1 Tax=Burkholderiales bacter... [more]
UPI001BA900C82.080e-2450.49cysteine synthase A n=1 Tax=Roseomonas arctica Tax... [more]
A0A0L0DSI2_THETB2.080e-2451.92Cysteine synthase n=1 Tax=Thecamonas trahens ATCC ... [more]
L8MWJ1_9CYAN2.950e-2452.43Cysteine synthase n=15 Tax=Pseudanabaena TaxID=115... [more]
A0A6A4YYQ6_9STRA4.850e-2453.06PALP domain-containing protein n=1 Tax=Aphanomyces... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78965contigM-pyrifera_M_contig78965:666..977 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score107.1
Seed ortholog evalue5.1e-21
Seed eggNOG ortholog82654.Pse7367_1774
Preferred namecysB
KEGG rclassRC00020,RC02814,RC02821
KEGG koko:K01738
KEGG ReactionR00897,R03601,R04859
KEGG Pathwayko00270,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00270,map00920,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00021
Hectar predicted targeting categoryother localisation
GOsGO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004124,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019344,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.Cysteine synthase
EggNOG OGs1G0T4@1117,1H7K5@1150,COG0031@1,COG0031@2
EC2.5.1.47
COG Functional cat.E
Best tax levelOscillatoriales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816692.9402578-CDS-M-pyrifera_M_contig78965:665..9771622816692.9402578-CDS-M-pyrifera_M_contig78965:665..977Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78965 666..977 +
1692278123.278806-CDS-M-pyrifera_M_contig78965:665..9771692278123.278806-CDS-M-pyrifera_M_contig78965:665..977Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78965 666..977 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78965.18553.1prot_M-pyrifera_M_contig78965.18553.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78965 666..977 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78965.18553.1

>prot_M-pyrifera_M_contig78965.18553.1 ID=prot_M-pyrifera_M_contig78965.18553.1|Name=mRNA_M-pyrifera_M_contig78965.18553.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
SFEQGDGKTPLLRLRSLDEVVGARLLGKAEFLSVGGSVKDRAAAFMVLGA
EQDGRLPRGGGGVVVEATGGNTGVSLVLAAHARGHKTVMAVPSGISKGKI
DLMR
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mRNA from alignment at M-pyrifera_M_contig78965:666..977+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78965.18553.1 ID=mRNA_M-pyrifera_M_contig78965.18553.1|Name=mRNA_M-pyrifera_M_contig78965.18553.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig78965:666..977+ (Macrocystis pyrifera P11B4 male)
TCCTTTGAGCAAGGCGATGGGAAAACTCCGCTTTTGAGATTACGGAGTCT GGATGAGGTGGTTGGAGCTCGATTGTTGGGGAAGGCCGAGTTCTTGAGTG TGGGTGGGAGTGTGAAGGATCGGGCAGCGGCATTCATGGTGCTTGGGGCA GAGCAGGATGGCAGATTGCCACGAGGAGGTGGTGGAGTGGTGGTGGAGGC GACTGGAGGGAACACAGGGGTGAGTTTGGTATTGGCCGCACATGCAAGGG GGCATAAGACGGTGATGGCAGTGCCTAGTGGGATATCGAAAGGGAAAATC GATTTAATGCGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78965:666..977+

>mRNA_M-pyrifera_M_contig78965.18553.1 ID=mRNA_M-pyrifera_M_contig78965.18553.1|Name=mRNA_M-pyrifera_M_contig78965.18553.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig78965:666..977+ (Macrocystis pyrifera P11B4 male)
TCCTTTGAGCAAGGCGATGGGAAAACTCCGCTTTTGAGATTACGGAGTCT
GGATGAGGTGGTTGGAGCTCGATTGTTGGGGAAGGCCGAGTTCTTGAGTG
TGGGTGGGAGTGTGAAGGATCGGGCAGCGGCATTCATGGTGCTTGGGGCA
GAGCAGGATGGCAGATTGCCACGAGGAGGTGGTGGAGTGGTGGTGGAGGC
GACTGGAGGGAACACAGGGGTGAGTTTGGTATTGGCCGCACATGCAAGGG
GGCATAAGACGGTGATGGCAGTGCCTAGTGGGATATCGAAAGGGAAAATC
GATTTAATGCGTTCCTTTGAGCAAGGCGATGGGAAAACTCCGCTTTTGAG
ATTACGGAGTCTGGATGAGGTGGTTGGAGCTCGATTGTTGGGGAAGGCCG
AGTTCTTGAGTGTGGGTGGGAGTGTGAAGGATCGGGCAGCGGCATTCATG
GTGCTTGGGGCAGAGCAGGATGGCAGATTGCCACGAGGAGGTGGTGGAGT
GGTGGTGGAGGCGACTGGAGGGAACACAGGGGTGAGTTTGGTATTGGCCG
CACATGCAAGGGGGCATAAGACGGTGATGGCAGTGCCTAGTGGGATATCG
AAAGGGAAAATCGATTTAATGCGT
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