mRNA_M-pyrifera_M_contig78658.18488.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78658.18488.1
Unique NamemRNA_M-pyrifera_M_contig78658.18488.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig78658.18488.1 vs. uniprot
Match: A0A812SXU1_9DINO (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812SXU1_9DINO)

HSP 1 Score: 241 bits (615), Expect = 5.190e-74
Identity = 126/223 (56.50%), Postives = 159/223 (71.30%), Query Frame = 1
Query:    1 GKTMATPAVRRVARENNVDLSIVPGSGKDGRVMKEDVLAFVRGDLAPLDAKELASIDTPTSAPPTQAPPSVPTTAEDQVVPIRGLERAMVKSMTHAWATPHFGYSDEVLMDNLIELRTDLKEMAAAEGVKLSYLPIILKAISLGLREFPELNATVSPDLSEKVIRGSHNIGVAIDSPRGLIVPNVKDVQERSVFEIARELMRLQELAQDGKLAESDLSGGTFT 669
            GK +ATPAVRR+AREN VDL+ VP +GKDGRV+K DV+AF+ GD+A LD    A            A   +P    D+  PI+GL+R MVK+M  AWA PHFGY+DEV MD L+ LR  LK  A A G KLS++P I+KA+SL L+++P+LNA V+ D +E  I+G+HNIGVAIDSPRGLIVPN+K VQ  S+FE+A EL RL + AQ GK++  DL GGTFT
Sbjct:  192 GKVLATPAVRRIARENGVDLATVPATGKDGRVLKSDVMAFLAGDVAALDTSAGAPXXXXXXXXXVGA--GIPA---DETRPIKGLQRTMVKTMNTAWAVPHFGYADEVQMDALMALRASLKPAAEARGTKLSFMPFIIKAVSLALKQYPDLNAAVNSDETEVTIKGAHNIGVAIDSPRGLIVPNIKGVQNLSIFEVAAELNRLIDAAQAGKVSPEDLKGGTFT 409          
BLAST of mRNA_M-pyrifera_M_contig78658.18488.1 vs. uniprot
Match: D2V498_NAEGR (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2V498_NAEGR)

HSP 1 Score: 229 bits (583), Expect = 3.410e-69
Identity = 118/225 (52.44%), Postives = 162/225 (72.00%), Query Frame = 1
Query:    1 GKTMATPAVRRVARENNVDLSIVPGSGKDGRVMKEDVLAFVRGDLAPLD--AKELASIDTPTSAPPTQAPPSVPTTAEDQVVPIRGLERAMVKSMTHAWATPHFGYSDEVLMDNLIELRTDLKEMAAAEGVKLSYLPIILKAISLGLREFPELNATVSPDLSEKVIRGSHNIGVAIDSPRGLIVPNVKDVQERSVFEIARELMRLQELAQDGKLAESDLSGGTFT 669
            GKT+ TPAVRR+ARENN+DL+ V  +G++GRV+KEDVL+++       +  ++++A++   T    T A PS P    D+  P+RGL R M+K+M  A   PHFGY DEV +DNL+ LR  LK+ A  +GVKLSY+P I+KA+SL L+E+P LN+++S D SE + +G HNIGVA+D+P GL+VPN+K VQ +S+ EIA EL RLQEL + GKL  +DL GGTFT
Sbjct:  195 GKTLTTPAVRRIARENNIDLTKVQATGRNGRVLKEDVLSYLENPTKHTEKQSEKVAAVPEQT----TTAAPSTPVVG-DRREPVRGLMRTMIKTMNAATKVPHFGYKDEVYVDNLMTLRNHLKKTAERQGVKLSYMPFIIKAVSLALKEYPVLNSSLSEDESEIIYKGEHNIGVAMDTPNGLLVPNIKSVQNKSILEIAAELNRLQELGKQGKLGSNDLRGGTFT 414          
BLAST of mRNA_M-pyrifera_M_contig78658.18488.1 vs. uniprot
Match: L8HLE5_ACACA (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HLE5_ACACA)

HSP 1 Score: 227 bits (579), Expect = 8.090e-69
Identity = 121/241 (50.21%), Postives = 166/241 (68.88%), Query Frame = 1
Query:    1 GKTMATPAVRRVARENNVDLSIVPGSGKDGRVMKEDVLAFVRGDLAPLDAKELASIDTPTSAPPTQAPPSVP------------------TTAEDQVVPIRGLERAMVKSMTHAWATPHFGYSDEVLMDNLIELRTDLKEMAAAEGVKLSYLPIILKAISLGLREFPELNATVSPDLSEKVIRGSHNIGVAIDSPRGLIVPNVKDVQERSVFEIARELMRLQELAQDGKLAESDLSGGTFT 669
            G  + TPAVRR+A+EN++DLS V G+G+DGRV+KEDVLA++ G      A    ++ T   A P   PPS                        D+ V IRGL+RAMVK+MT A   PHFGYSDE+++D ++ LR +LK +A A GVKLSY+P ILKAISL L+ +P LN++V+ D+S+ + + SHN+GVA+D+P+GLIVPN+KDVQ  ++FEIA+EL RLQ L ++G+L + DL+GGTFT
Sbjct:  154 GPVLTTPAVRRIAKENSIDLSKVAGTGRDGRVLKEDVLAYLEGSPLAHQAPPQFALPTAAGAVP-PLPPSXXXXXXXEAGGLAHVVARKAVVGADREVEIRGLQRAMVKTMTAANQIPHFGYSDEIVVDQMVALRDELKPIAEARGVKLSYMPFILKAISLALKSYPVLNSSVNADVSKIIYKASHNLGVAMDTPQGLIVPNIKDVQVLTIFEIAQELNRLQRLGKEGRLGKEDLTGGTFT 393          
BLAST of mRNA_M-pyrifera_M_contig78658.18488.1 vs. uniprot
Match: UPI001CFDD8C6 (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFDD8C6)

HSP 1 Score: 226 bits (577), Expect = 4.350e-68
Identity = 115/223 (51.57%), Postives = 156/223 (69.96%), Query Frame = 1
Query:    1 GKTMATPAVRRVARENNVDLSIVPGSGKDGRVMKEDVLAFVRGDLAPLDAKELASIDTPTSAPPTQAPPSVPTTAEDQVVPIRGLERAMVKSMTHAWATPHFGYSDEVLMDNLIELRTDLKEMAAAEGVKLSYLPIILKAISLGLREFPELNATVSPDLSEKVIRGSHNIGVAIDSPRGLIVPNVKDVQERSVFEIARELMRLQELAQDGKLAESDLSGGTFT 669
            GK + TPAVRR+AREN++DL+ V  +G++GRV+KEDVL++++   A     E     T  + P   +  +  T A+D+  P+RGL R M+K+M  A   PHFGY DE+ MDNLI LR  LK+MA  +GVKLSY+P I+KA+SL L E+P LN+++S D +E + +  HNIGVA+D+P GL+VPN+K VQ +S+ EIA EL RLQEL + GKL   DL GGTFT
Sbjct:  213 GKVLTTPAVRRLARENSIDLTKVQPTGRNGRVLKEDVLSYLQDPSAQSKKTEKQPTPTIATTPSVTSAATTTTVAQDRREPVRGLMRTMIKTMNAATKVPHFGYKDEICMDNLIVLRQHLKKMAEKQGVKLSYMPFIIKAVSLALNEYPVLNSSLSEDETEIIYKADHNIGVAMDTPNGLLVPNIKRVQNKSIMEIAAELNRLQELGKQGKLGMDDLKGGTFT 435          
BLAST of mRNA_M-pyrifera_M_contig78658.18488.1 vs. uniprot
Match: D0E7R6_NAEGR (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D0E7R6_NAEGR)

HSP 1 Score: 224 bits (572), Expect = 6.510e-68
Identity = 114/223 (51.12%), Postives = 162/223 (72.65%), Query Frame = 1
Query:    1 GKTMATPAVRRVARENNVDLSIVPGSGKDGRVMKEDVLAFVRGDLAPLDAKELASIDTPTSAPPTQAPPSVPTTAEDQVVPIRGLERAMVKSMTHAWATPHFGYSDEVLMDNLIELRTDLKEMAAAEGVKLSYLPIILKAISLGLREFPELNATVSPDLSEKVIRGSHNIGVAIDSPRGLIVPNVKDVQERSVFEIARELMRLQELAQDGKLAESDLSGGTFT 669
            GK + TPAVRR+ARENN+DL+ VP +G++GRV+KEDVL+++        ++++A  +  ++A      PS PT   D+  P+RGL R M+++M  A   PHFGY DEV +DNL+ +R+ LK+ A  +GVKLSY+P I+KA+SL L+E+P LN++++ D SE + +G HNIGVA+D+P GL+VPN+K VQ +S+ EIA EL RLQEL + GKL  +DL GGTFT
Sbjct:  160 GKILTTPAVRRIARENNLDLTKVPATGRNGRVLKEDVLSYLENPTKQ-QSEKVAVPEQTSTATTXXXXPSTPTVG-DRREPVRGLMRTMIRTMNAATKVPHFGYKDEVYVDNLMIIRSHLKKTAERQGVKLSYMPFIIKAVSLALKEYPILNSSLTEDESEIIYKGDHNIGVAMDTPNGLLVPNIKSVQNKSILEIAAELNRLQELGKQGKLGANDLKGGTFT 380          
BLAST of mRNA_M-pyrifera_M_contig78658.18488.1 vs. uniprot
Match: A0A673AYG5_9TELE (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Sphaeramia orbicularis TaxID=375764 RepID=A0A673AYG5_9TELE)

HSP 1 Score: 222 bits (565), Expect = 3.580e-67
Identity = 122/226 (53.98%), Postives = 154/226 (68.14%), Query Frame = 1
Query:    4 KTMATPAVRRVARENNVDLSIVPGSGKDGRVMKEDVLAFVRGDL-APLDAKELASIDTPTSAPPTQAPPSVPT---TAEDQVVPIRGLERAMVKSMTHAWATPHFGYSDEVLMDNLIELRTDLKEMAAAEGVKLSYLPIILKAISLGLREFPELNATVSPDLSEKVIRGSHNIGVAIDSPRGLIVPNVKDVQERSVFEIARELMRLQELAQDGKLAESDLSGGTFT 669
            KT ATPAVRR+A ENN+ LS V GSGKDGR++KED+L F+     A L       I TP +APP  A PS P    T +D++ P++G  RAMVK+MT A   PHFGY DEV +  L++LR+DLK  +   GVKLSY+P  +KA SLGL  FP LNA+V         + SHN+GVA+D+ +GL+VPNVK+VQ  SVF+IA+EL RLQ L   G+L  +DLSGGTFT
Sbjct:  127 KTQATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNFLSKQTGAILPPAPFQDIRTPPTAPPPSAAPSPPAPVFTGKDRMEPLKGFHRAMVKTMTAALQIPHFGYCDEVDLSQLVQLRSDLKSTSEGRGVKLSYMPFFIKAASLGLLHFPILNASVDEGCQNITYKASHNVGVAMDTSQGLLVPNVKNVQLLSVFDIAQELNRLQTLGAAGQLGAADLSGGTFT 352          
BLAST of mRNA_M-pyrifera_M_contig78658.18488.1 vs. uniprot
Match: A0A5A8C5U6_CAFRO (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C5U6_CAFRO)

HSP 1 Score: 220 bits (561), Expect = 2.780e-66
Identity = 127/236 (53.81%), Postives = 151/236 (63.98%), Query Frame = 1
Query:    7 TMATPAVRRVARENNVDLSIVPGSGKDGRVMKEDVLAFVR-GDLAPLDAKELASIDTPTSAPPTQAPPSVPT---------------TAEDQVVPIRGLERAMVKSMTHAWATPHFGYSDEVLMDNLIELRTDLKEMAAAEGVKLSYLPIILKAISLGLREFPELNATVSPDLSEKVIRGSHNIGVAIDSPRGLIVPNVKDVQERSVFEIARELMRLQELAQDGKLAESDLSGGTF 666
            T+A PAVRR+ARE+NVDLS+VPG+GKDGRV+K D+LAFV  G  AP  A    + +T                               A D   P+RGL RAM KSMT AWA PHFGY DEV MD    LR  LK +AA  GVK S++PI+LKAIS+ L + P LNA V+ D S   ++GSHNIGVA+D+PRGLIVPNVKDVQ RS+ E+A EL RLQ LA  G+L E DL  GTF
Sbjct:  142 TLAAPAVRRIAREHNVDLSLVPGTGKDGRVLKGDILAFVESGGKAPAAAAAPKAAETARXXXXXXXXXXXXXXXXXXXXXXXXXAGFAAADVDEPLRGLRRAMAKSMTAAWAVPHFGYCDEVEMDAAAALRAQLKPLAAERGVKFSFMPILLKAISIALLDAPGLNAWVNEDCSTLTLKGSHNIGVAMDTPRGLIVPNVKDVQARSLMEVASELTRLQALAAAGQLGEEDLRDGTF 377          
BLAST of mRNA_M-pyrifera_M_contig78658.18488.1 vs. uniprot
Match: A0A6A5BA94_NAEFO (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BA94_NAEFO)

HSP 1 Score: 221 bits (563), Expect = 5.110e-66
Identity = 118/226 (52.21%), Postives = 158/226 (69.91%), Query Frame = 1
Query:    4 KTMATPAVRRVARENNVDLSIVPGSGKDGRVMKEDVLAFVRGDLAPLDAKELASIDTPTSAPPTQAPPSVPTTA----EDQVVPIRGLERAMVKSMTHAWATPHFGYSDEVLMDNLIELRTDLKEMAAAEGVKLSYLPIILKAISLGLREFPELNATVSPDLSEKVIRGSHNIGVAIDSPRGLIVPNVKDVQERSVFEIARELMRLQELAQDGKLAESDLSGGTFT 669
            K + TPAVRR+ARENN+DL+ V  +G++GRV+KEDVL++++   A     +   I+   + P   A PSV  TA    +++  P+RGL R M+K+M  A   PHFGY DEV +DNLI LR  LK+MA  +GVKLSY+P I+KA+SL L E+P LN+++S D SE + +  HNIGVA+D+P GL+VPN+K VQ +S+ EIA EL RLQEL + GKL   DL GGTFT
Sbjct:  214 KVLTTPAVRRLARENNIDLTKVRPTGRNGRVLKEDVLSYLQDPSA-----QSKVIEKQPTTPAVSATPSVTATATTVAQERREPVRGLMRTMIKTMNAATKVPHFGYKDEVCVDNLIVLRQHLKKMAEKQGVKLSYMPFIIKAVSLALNEYPILNSSLSEDESEIIYKADHNIGVAMDTPNGLLVPNIKRVQTKSIMEIAAELNRLQELGKQGKLGMDDLKGGTFT 434          
BLAST of mRNA_M-pyrifera_M_contig78658.18488.1 vs. uniprot
Match: A0A090LHD6_STRRB (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Strongyloides ratti TaxID=34506 RepID=A0A090LHD6_STRRB)

HSP 1 Score: 218 bits (555), Expect = 1.270e-65
Identity = 110/223 (49.33%), Postives = 158/223 (70.85%), Query Frame = 1
Query:    1 GKTMATPAVRRVARENNVDLSIVPGSGKDGRVMKEDVLAFVRGDLAPLDAKELASIDTPTSAPPTQAPPSVPTTAEDQVVPIRGLERAMVKSMTHAWATPHFGYSDEVLMDNLIELRTDLKEMAAAEGVKLSYLPIILKAISLGLREFPELNATVSPDLSEKVIRGSHNIGVAIDSPRGLIVPNVKDVQERSVFEIARELMRLQELAQDGKLAESDLSGGTFT 669
            GK +ATPAVRR+A ENN+DL+ V GSG++GR+MKEDVL F+ G++ PL+             P  +       T ED+VVPIRG  RAMVK+M+ A   PHFGY+DE  +D L+E+R DLKE++  +G+KLSY+P+ +KA SL L ++P LNATV  +L   + + SHNI +A+D+P GL+VPN+K+ +++++FEIA +LM+L E  +  ++ + DLSGGTFT
Sbjct:  148 GKVLATPAVRRIAWENNIDLTTVNGSGRNGRIMKEDVLRFL-GEIPPLEE------------PKEEISKKSIITGEDKVVPIRGYTRAMVKTMSQALNVPHFGYNDEFYVDKLVEMRKDLKEISKEKGIKLSYMPMFIKACSLALLKYPSLNATVDENLENVIYKSSHNICLAMDTPGGLVVPNIKNCEQKTIFEIAEDLMKLHESGKKQQIRKEDLSGGTFT 357          
BLAST of mRNA_M-pyrifera_M_contig78658.18488.1 vs. uniprot
Match: A0A8C1YS75_CYPCA (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1YS75_CYPCA)

HSP 1 Score: 217 bits (553), Expect = 5.650e-65
Identity = 118/231 (51.08%), Postives = 161/231 (69.70%), Query Frame = 1
Query:    4 KTMATPAVRRVARENNVDLSIVPGSGKDGRVMKEDVLAFVR---GDLAPLDAKELASI--DTPTSAP-PTQAPPSVPT---TAEDQVVPIRGLERAMVKSMTHAWATPHFGYSDEVLMDNLIELRTDLKEMAAAEGVKLSYLPIILKAISLGLREFPELNATVSPDLSEKVIRGSHNIGVAIDSPRGLIVPNVKDVQERSVFEIARELMRLQELAQDGKLAESDLSGGTFT 669
            KT ATPAVRR+A ENN+ LS V G+GKDGR++KED+++F+    G + P + ++  S   DTP     P  APP++P    T +D+  P+ G ++AMVK+MT A   PHFGY DEV +  L++LR++LK++A + GVKLSY+P  +KA SLGL +FP LNA+V         + SHNIG+A+D+P+GL+VPNVK VQ  SVF+IA EL RLQ L   G+L  +DL+GGTFT
Sbjct:  160 KTQATPAVRRLAMENNIKLSEVVGTGKDGRILKEDIISFLAKQTGAILPYEVQKTPSPTEDTPPKEKTPIMAPPAIPRPVFTWKDRTEPLNGFQKAMVKTMTAALKIPHFGYCDEVDLTQLVQLRSELKDLAESRGVKLSYMPFFIKAASLGLLQFPILNASVDEGCQNITFKASHNIGLAMDTPQGLLVPNVKSVQALSVFDIAVELNRLQALGSAGQLGTADLTGGTFT 390          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78658.18488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812SXU1_9DINO5.190e-7456.50Dihydrolipoamide acetyltransferase component of py... [more]
D2V498_NAEGR3.410e-6952.44Dihydrolipoamide acetyltransferase component of py... [more]
L8HLE5_ACACA8.090e-6950.21Dihydrolipoamide acetyltransferase component of py... [more]
UPI001CFDD8C64.350e-6851.57uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
D0E7R6_NAEGR6.510e-6851.12Dihydrolipoamide acetyltransferase component of py... [more]
A0A673AYG5_9TELE3.580e-6753.98Dihydrolipoamide acetyltransferase component of py... [more]
A0A5A8C5U6_CAFRO2.780e-6653.81Dihydrolipoamide acetyltransferase component of py... [more]
A0A6A5BA94_NAEFO5.110e-6652.21Dihydrolipoamide acetyltransferase component of py... [more]
A0A090LHD6_STRRB1.270e-6549.33Dihydrolipoamide acetyltransferase component of py... [more]
A0A8C1YS75_CYPCA5.650e-6551.08Dihydrolipoamide acetyltransferase component of py... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78658contigM-pyrifera_M_contig78658:60..909 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score225.3
Seed ortholog evalue2.7e-56
Seed eggNOG ortholog5762.XP_002681089.1
Preferred nameDBT
KEGG rclassRC00004,RC02727,RC02870
KEGG koko:K09699,ko:K11273,ko:K20166
KEGG ReactionR02662,R03174,R04097,R10998
KEGG Pathwayko00280,ko00640,ko01100,ko01110,ko01130,map00280,map00640,map01100,map01110,map01130
KEGG ModuleM00036
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004147,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0005929,GO:0005947,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009295,GO:0009353,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010565,GO:0015980,GO:0016417,GO:0016740,GO:0016746,GO:0016747,GO:0016999,GO:0017144,GO:0019216,GO:0019217,GO:0019222,GO:0019752,GO:0019899,GO:0030062,GO:0030523,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031625,GO:0031974,GO:0032991,GO:0040019,GO:0042304,GO:0042645,GO:0042995,GO:0043005,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044389,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045239,GO:0045240,GO:0045252,GO:0045333,GO:0045723,GO:0045834,GO:0045923,GO:0045995,GO:0046662,GO:0046889,GO:0046890,GO:0048518,GO:0048520,GO:0048522,GO:0048580,GO:0048582,GO:0050789,GO:0050793,GO:0050794,GO:0050795,GO:0051094,GO:0051239,GO:0051240,GO:0055114,GO:0061062,GO:0061063,GO:0062012,GO:0062013,GO:0065007,GO:0070013,GO:0071704,GO:0072350,GO:0080090,GO:0097458,GO:0098798,GO:0120025,GO:1901046,GO:1902494,GO:1990204,GO:1990234,GO:2000026,GO:2000241,GO:2000243
EggNOG free text desc.Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex
EggNOG OGsCOG0508@1,KOG0558@2759
EC2.3.1.168,3.6.4.13
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000,ko03036,ko04131
Exons2
Model size672
Cds size663
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78658.18488.1prot_M-pyrifera_M_contig78658.18488.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78658 60..900 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816689.5325458-CDS-M-pyrifera_M_contig78658:59..3741622816689.5325458-CDS-M-pyrifera_M_contig78658:59..374Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78658 60..374 -
1692278121.296666-CDS-M-pyrifera_M_contig78658:59..3741692278121.296666-CDS-M-pyrifera_M_contig78658:59..374Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78658 60..374 -
1622816689.5459106-CDS-M-pyrifera_M_contig78658:552..9001622816689.5459106-CDS-M-pyrifera_M_contig78658:552..900Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78658 553..900 -
1692278121.3092244-CDS-M-pyrifera_M_contig78658:552..9001692278121.3092244-CDS-M-pyrifera_M_contig78658:552..900Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78658 553..900 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816689.5605812-UTR-M-pyrifera_M_contig78658:900..9091622816689.5605812-UTR-M-pyrifera_M_contig78658:900..909Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig78658 901..909 -
1692278121.3196795-UTR-M-pyrifera_M_contig78658:900..9091692278121.3196795-UTR-M-pyrifera_M_contig78658:900..909Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig78658 901..909 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78658.18488.1

>prot_M-pyrifera_M_contig78658.18488.1 ID=prot_M-pyrifera_M_contig78658.18488.1|Name=mRNA_M-pyrifera_M_contig78658.18488.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=221bp
MATPAVRRVARENNVDLSIVPGSGKDGRVMKEDVLAFVRGDLAPLDAKEL
ASIDTPTSAPPTQAPPSVPTTAEDQVVPIRGLERAMVKSMTHAWATPHFG
YSDEVLMDNLIELRTDLKEMAAAEGVKLSYLPIILKAISLGLREFPELNA
TVSPDLSEKVIRGSHNIGVAIDSPRGLIVPNVKDVQERSVFEIARELMRL
QELAQDGKLAESDLSGGTFT*
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mRNA from alignment at M-pyrifera_M_contig78658:60..909-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78658.18488.1 ID=mRNA_M-pyrifera_M_contig78658.18488.1|Name=mRNA_M-pyrifera_M_contig78658.18488.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=850bp|location=Sequence derived from alignment at M-pyrifera_M_contig78658:60..909- (Macrocystis pyrifera P11B4 male)
GGCAAAACCATGGCAACTCCAGCAGTACGACGAGTTGCAAGAGAAAACAA TGTGGATCTTTCCATTGTCCCAGGCAGCGGTAAAGATGGTCGTGTGATGA AGGAAGATGTTTTGGCCTTTGTACGAGGTGATCTGGCACCATTGGATGCA AAAGAACTTGCATCAATCGACACTCCAACCTCAGCACCTCCAACACAAGC TCCTCCATCCGTCCCAACCACAGCAGAAGATCAAGTGGTCCCAATTCGAG GCTTGGAACGAGCCATGGTCAAGTCCATGACACACGCTTGGGCAACGCCA CACTTTGGCTACTCCGATGAAGTTCTTATGGACAATCTCATCGAGCTGCG CACTGATGTAAGTTGAAGAAAAACGTGAATAGGGGTGAATAGTGGGAAGT GGGGGAAGGGGAGTGGAAGGGGGGTGGAAGAGGTGACTATTTTTTTTTGT ATGCATTCGTTCGTCTTCCCCCTCCCCCCTCCCCTTCCCTCCATACTTCC TTCTTCTCCCATTTATTTTTTCCTATGAATTGCAGTTGAAGGAGATGGCT GCAGCGGAAGGGGTGAAGTTGAGCTACCTTCCAATTATTCTGAAAGCCAT TTCTTTGGGTCTGCGAGAATTCCCAGAGTTGAACGCCACTGTGAGTCCAG ACTTGAGTGAGAAGGTGATACGTGGATCGCACAACATTGGAGTGGCCATT GACTCTCCACGAGGATTGATTGTTCCCAATGTCAAGGACGTCCAAGAACG CTCAGTGTTCGAAATTGCCAGGGAATTGATGCGTCTTCAAGAATTAGCAC AGGATGGAAAGCTGGCTGAAAGTGATTTGTCGGGAGGAACATTCACGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78658:60..909-

>mRNA_M-pyrifera_M_contig78658.18488.1 ID=mRNA_M-pyrifera_M_contig78658.18488.1|Name=mRNA_M-pyrifera_M_contig78658.18488.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1326bp|location=Sequence derived from alignment at M-pyrifera_M_contig78658:60..909- (Macrocystis pyrifera P11B4 male)
ATGGCAACTCCAGCAGTACGACGAGTTGCAAGAGAAAACAATGTGGATCT
TTCCATTGTCCCAGGCAGCGGTAAAGATGGTCGTGTGATGAAGGAAGATG
TTTTGGCCTTTGTACGAGGTGATCTGGCACCATTGGATGCAAAAGAACTT
GCATCAATCGACACTCCAACCTCAGCACCTCCAACACAAGCTCCTCCATC
CGTCCCAACCACAGCAGAAGATCAAGTGGTCCCAATTCGAGGCTTGGAAC
GAGCCATGGTCAAGTCCATGACACACGCTTGGGCAACGCCACACTTTGGC
TACTCCGATGAAGTTCTTATGGACAATCTCATCGAGCTGCGCACTGATAT
GGCAACTCCAGCAGTACGACGAGTTGCAAGAGAAAACAATGTGGATCTTT
CCATTGTCCCAGGCAGCGGTAAAGATGGTCGTGTGATGAAGGAAGATGTT
TTGGCCTTTGTACGAGGTGATCTGGCACCATTGGATGCAAAAGAACTTGC
ATCAATCGACACTCCAACCTCAGCACCTCCAACACAAGCTCCTCCATCCG
TCCCAACCACAGCAGAAGATCAAGTGGTCCCAATTCGAGGCTTGGAACGA
GCCATGGTCAAGTCCATGACACACGCTTGGGCAACGCCACACTTTGGCTA
CTCCGATGAAGTTCTTATGGACAATCTCATCGAGCTGCGCACTGATTTGA
AGGAGATGGCTGCAGCGGAAGGGGTGAAGTTGAGCTACCTTCCAATTATT
CTGAAAGCCATTTCTTTGGGTCTGCGAGAATTCCCAGAGTTGAACGCCAC
TGTGAGTCCAGACTTGAGTGAGAAGGTGATACGTGGATCGCACAACATTG
GAGTGGCCATTGACTCTCCACGAGGATTGATTGTTCCCAATGTCAAGGAC
GTCCAAGAACGCTCAGTGTTCGAAATTGCCAGGGAATTGATGCGTCTTCA
AGAATTAGCACAGGATGGAAAGCTGGCTGAAAGTGATTTGTCGGGAGGAA
CATTCACGTAATTGAAGGAGATGGCTGCAGCGGAAGGGGTGAAGTTGAGC
TACCTTCCAATTATTCTGAAAGCCATTTCTTTGGGTCTGCGAGAATTCCC
AGAGTTGAACGCCACTGTGAGTCCAGACTTGAGTGAGAAGGTGATACGTG
GATCGCACAACATTGGAGTGGCCATTGACTCTCCACGAGGATTGATTGTT
CCCAATGTCAAGGACGTCCAAGAACGCTCAGTGTTCGAAATTGCCAGGGA
ATTGATGCGTCTTCAAGAATTAGCACAGGATGGAAAGCTGGCTGAAAGTG
ATTTGTCGGGAGGAACATTCACGTAA
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