mRNA_M-pyrifera_M_contig78539.18454.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78539.18454.1
Unique NamemRNA_M-pyrifera_M_contig78539.18454.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig78539.18454.1 vs. uniprot
Match: UPI0019C0C6D2 (IPT/TIG domain-containing protein n=1 Tax=Hymenobacteraceae bacterium TaxID=2065362 RepID=UPI0019C0C6D2)

HSP 1 Score: 58.9 bits (141), Expect = 2.730e-7
Identity = 43/136 (31.62%), Postives = 69/136 (50.74%), Query Frame = 1 
Query:   31 ANDLCSDA-IQIAASGGVVMGNTGYASNATLLTSSCNGVRLNTIGGVWYTITPAAGTKVLATTC--ENSFFDTELALLYGGCNEQTCVTADDNACSSYESLSINAEDSALAWTADGSEYLLYVTGKQYSAGNFQLT 429
            AND CS   + +   G V+ G T  A++A    + CN     + GGV+Y  T   G +V  +TC   +S FDT+L +  G C   TC    D+ C     +++         T  G++YL++V+GK  + G+F+L+
Sbjct:  690 ANDFCSAPNLPVLTCGAVISGTTYGATSAGDPATGCN--LTVSSGGVFYRFT-GTGDRVSFSTCARRSSGFDTQLHVFSGACGSLTCAGGSDDVCGVASEVTLT--------TLAGTDYLIFVSGKNLNQGDFRLS 814
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BLAST of mRNA_M-pyrifera_M_contig78539.18454.1 vs. uniprot
Match: A0A553AJ84_9FLAO (Gliding motility-associated C-terminal domain-containing protein n=1 Tax=Flavobacterium sp. GT3R68 TaxID=2594437 RepID=A0A553AJ84_9FLAO)

HSP 1 Score: 53.1 bits (126), Expect = 2.830e-5
Identity = 42/123 (34.15%), Postives = 59/123 (47.97%), Query Frame = 1 
Query:   28 AANDLCSDAIQIAASGGVVMGNTGYASNATLLTSSCNGVRLNTIGGVWYTITPAAGTKVLATTCENSFFDTELALLYGGCNEQTCVTADDNACSSYESLSINAEDSALAWTADGSEYLLYVTG 396
            A NDLCS AI IA  GG     T  A+     T +C        GG+WY+     G  V  + C  S +DT++ ++ G C   TCVT +D+ CS+   ++IN+          G  Y +YV G
Sbjct:  520 ATNDLCSGAIPIAC-GGTATQTTVGATTTGAPTGTCG--TTGGSGGLWYSYV-GTGDVVTFSLC-GSAYDTKIQVVTGACGTFTCVTGNDDFCSTQSQVTINS--------VLGINYYVYVFG 629
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78539.18454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI0019C0C6D22.730e-731.62IPT/TIG domain-containing protein n=1 Tax=Hymenoba... [more]
A0A553AJ84_9FLAO2.830e-534.15Gliding motility-associated C-terminal domain-cont... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78539contigM-pyrifera_M_contig78539:273..713 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size441
Cds size441
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816687.703013-CDS-M-pyrifera_M_contig78539:272..7131622816687.703013-CDS-M-pyrifera_M_contig78539:272..713Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78539 273..713 +
1692278120.1758096-CDS-M-pyrifera_M_contig78539:272..7131692278120.1758096-CDS-M-pyrifera_M_contig78539:272..713Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78539 273..713 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78539.18454.1prot_M-pyrifera_M_contig78539.18454.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78539 273..713 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78539.18454.1

>prot_M-pyrifera_M_contig78539.18454.1 ID=prot_M-pyrifera_M_contig78539.18454.1|Name=mRNA_M-pyrifera_M_contig78539.18454.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=147bp
LTDCEAGTEAANDLCSDAIQIAASGGVVMGNTGYASNATLLTSSCNGVRL
NTIGGVWYTITPAAGTKVLATTCENSFFDTELALLYGGCNEQTCVTADDN
ACSSYESLSINAEDSALAWTADGSEYLLYVTGKQYSAGNFQLTVVIS
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mRNA from alignment at M-pyrifera_M_contig78539:273..713+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78539.18454.1 ID=mRNA_M-pyrifera_M_contig78539.18454.1|Name=mRNA_M-pyrifera_M_contig78539.18454.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=441bp|location=Sequence derived from alignment at M-pyrifera_M_contig78539:273..713+ (Macrocystis pyrifera P11B4 male)
CTTACTGACTGTGAAGCAGGTACCGAAGCTGCCAACGACCTTTGCAGCGA
TGCTATTCAGATTGCTGCCAGCGGCGGGGTTGTGATGGGAAACACAGGAT
ACGCCAGCAACGCGACGCTGCTCACCTCCTCTTGTAACGGGGTGCGCCTC
AATACGATCGGTGGAGTTTGGTACACCATCACTCCTGCAGCAGGCACGAA
GGTACTGGCGACCACTTGCGAGAACAGCTTCTTCGACACTGAGCTTGCCC
TGCTCTACGGCGGCTGCAATGAGCAGACATGTGTTACAGCCGACGACAAC
GCCTGCAGCAGCTACGAAAGCCTGTCCATCAATGCGGAAGACTCTGCTCT
GGCATGGACTGCCGACGGGAGCGAGTACCTGCTCTACGTCACCGGCAAAC
AGTACTCCGCAGGAAACTTTCAGCTCACCGTGGTGATTAGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78539:273..713+

>mRNA_M-pyrifera_M_contig78539.18454.1 ID=mRNA_M-pyrifera_M_contig78539.18454.1|Name=mRNA_M-pyrifera_M_contig78539.18454.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=882bp|location=Sequence derived from alignment at M-pyrifera_M_contig78539:273..713+ (Macrocystis pyrifera P11B4 male)
CTTACTGACTGTGAAGCAGGTACCGAAGCTGCCAACGACCTTTGCAGCGA
TGCTATTCAGATTGCTGCCAGCGGCGGGGTTGTGATGGGAAACACAGGAT
ACGCCAGCAACGCGACGCTGCTCACCTCCTCTTGTAACGGGGTGCGCCTC
AATACGATCGGTGGAGTTTGGTACACCATCACTCCTGCAGCAGGCACGAA
GGTACTGGCGACCACTTGCGAGAACAGCTTCTTCGACACTGAGCTTGCCC
TGCTCTACGGCGGCTGCAATGAGCAGACATGTGTTACAGCCGACGACAAC
GCCTGCAGCAGCTACGAAAGCCTGTCCATCAATGCGGAAGACTCTGCTCT
GGCATGGACTGCCGACGGGAGCGAGTACCTGCTCTACGTCACCGGCAAAC
AGTACTCCGCAGGAAACTTTCAGCTCACCGTGGTGATTAGTCTTACTGAC
TGTGAAGCAGGTACCGAAGCTGCCAACGACCTTTGCAGCGATGCTATTCA
GATTGCTGCCAGCGGCGGGGTTGTGATGGGAAACACAGGATACGCCAGCA
ACGCGACGCTGCTCACCTCCTCTTGTAACGGGGTGCGCCTCAATACGATC
GGTGGAGTTTGGTACACCATCACTCCTGCAGCAGGCACGAAGGTACTGGC
GACCACTTGCGAGAACAGCTTCTTCGACACTGAGCTTGCCCTGCTCTACG
GCGGCTGCAATGAGCAGACATGTGTTACAGCCGACGACAACGCCTGCAGC
AGCTACGAAAGCCTGTCCATCAATGCGGAAGACTCTGCTCTGGCATGGAC
TGCCGACGGGAGCGAGTACCTGCTCTACGTCACCGGCAAACAGTACTCCG
CAGGAAACTTTCAGCTCACCGTGGTGATTAGT
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