mRNA_M-pyrifera_M_contig78399.18426.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78399.18426.1
Unique NamemRNA_M-pyrifera_M_contig78399.18426.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig78399.18426.1 vs. uniprot
Match: UPI001260ED78 (type II toxin-antitoxin system ParD family antitoxin n=1 Tax=Tautonia marina TaxID=2653855 RepID=UPI001260ED78)

HSP 1 Score: 48.1 bits (113), Expect = 2.320e-5
Identity = 28/76 (36.84%), Postives = 42/76 (55.26%), Query Frame = 1 
Query:   28 LEDRLEGGPYASLAELIEEALKALDQSVATE----DWLEEKLREAEASGPAAPMTQQDWDDIEREGFERIRAKSPK 243
            +  +L+ G YAS  +++++AL  L Q  A +      +E  L +   SGPA PMT  DWD++EREG   I  +  K
Sbjct:   13 IRSQLQSGKYASEDDVVDQALDLLRQREAEQASERSRVESLLIQGLDSGPATPMTSDDWDEVEREGQRLIAERKAK 88
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BLAST of mRNA_M-pyrifera_M_contig78399.18426.1 vs. uniprot
Match: UPI001993B626 (Type II toxin-antitoxin system ParD family antitoxin n=1 Tax=Gloeobacterales cyanobacterium ES-bin-313 TaxID=2812629 RepID=UPI001993B626)

HSP 1 Score: 46.6 bits (109), Expect = 9.640e-5
Identity = 29/79 (36.71%), Postives = 43/79 (54.43%), Query Frame = 1 
Query:    4 LPQKLLHELEDRLEGGPYASLAELIEEALKALDQSVATEDWLEEKLREAEASGPAAPMTQQDWDDIEREGFERIRAKSP 240
            LP+ +   +E R++ G +++ +E +  AL   DQ    E+ LE  L E   SGPA PMT QDW +I  E   R++   P
Sbjct:    8 LPKVMKDYVESRVQEGGFSTPSEYMR-ALVREDQKRKAEEKLEALLLEGIQSGPATPMTPQDWKEIRAEVLRRVQRGEP 85
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78399.18426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI001260ED782.320e-536.84type II toxin-antitoxin system ParD family antitox... [more]
UPI001993B6269.640e-536.71Type II toxin-antitoxin system ParD family antitox... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78399contigM-pyrifera_M_contig78399:691..936 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size246
Cds size246
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816685.9446747-CDS-M-pyrifera_M_contig78399:690..9361622816685.9446747-CDS-M-pyrifera_M_contig78399:690..936Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78399 691..936 -
1692278119.0798047-CDS-M-pyrifera_M_contig78399:690..9361692278119.0798047-CDS-M-pyrifera_M_contig78399:690..936Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78399 691..936 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78399.18426.1prot_M-pyrifera_M_contig78399.18426.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78399 691..936 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78399.18426.1

>prot_M-pyrifera_M_contig78399.18426.1 ID=prot_M-pyrifera_M_contig78399.18426.1|Name=mRNA_M-pyrifera_M_contig78399.18426.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=82bp
MLPQKLLHELEDRLEGGPYASLAELIEEALKALDQSVATEDWLEEKLREA
EASGPAAPMTQQDWDDIEREGFERIRAKSPK*
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mRNA from alignment at M-pyrifera_M_contig78399:691..936-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78399.18426.1 ID=mRNA_M-pyrifera_M_contig78399.18426.1|Name=mRNA_M-pyrifera_M_contig78399.18426.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=246bp|location=Sequence derived from alignment at M-pyrifera_M_contig78399:691..936- (Macrocystis pyrifera P11B4 male)
ATGTTGCCTCAGAAACTATTGCACGAATTGGAGGATAGGCTTGAAGGGGG
GCCGTACGCGTCTTTGGCCGAGTTGATCGAGGAGGCGCTCAAGGCGCTTG
ATCAATCCGTCGCAACTGAGGACTGGCTCGAAGAAAAACTCCGCGAGGCT
GAAGCGAGCGGACCCGCTGCCCCAATGACGCAGCAGGATTGGGATGACAT
CGAGCGTGAAGGTTTCGAACGGATTCGGGCCAAGAGTCCTAAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78399:691..936-

>mRNA_M-pyrifera_M_contig78399.18426.1 ID=mRNA_M-pyrifera_M_contig78399.18426.1|Name=mRNA_M-pyrifera_M_contig78399.18426.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig78399:691..936- (Macrocystis pyrifera P11B4 male)
ATGTTGCCTCAGAAACTATTGCACGAATTGGAGGATAGGCTTGAAGGGGG
GCCGTACGCGTCTTTGGCCGAGTTGATCGAGGAGGCGCTCAAGGCGCTTG
ATCAATCCGTCGCAACTGAGGACTGGCTCGAAGAAAAACTCCGCGAGGCT
GAAGCGAGCGGACCCGCTGCCCCAATGACGCAGCAGGATTGGGATGACAT
CGAGCGTGAAGGTTTCGAACGGATTCGGGCCAAGAGTCCTAAGTGAATGT
TGCCTCAGAAACTATTGCACGAATTGGAGGATAGGCTTGAAGGGGGGCCG
TACGCGTCTTTGGCCGAGTTGATCGAGGAGGCGCTCAAGGCGCTTGATCA
ATCCGTCGCAACTGAGGACTGGCTCGAAGAAAAACTCCGCGAGGCTGAAG
CGAGCGGACCCGCTGCCCCAATGACGCAGCAGGATTGGGATGACATCGAG
CGTGAAGGTTTCGAACGGATTCGGGCCAAGAGTCCTAAGTGA
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