mRNA_M-pyrifera_M_contig78298.18407.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78298.18407.1
Unique NamemRNA_M-pyrifera_M_contig78298.18407.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig78298.18407.1 vs. uniprot
Match: A0A7S0PF08_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PF08_CAFRO)

HSP 1 Score: 242 bits (618), Expect = 1.060e-74
Identity = 134/209 (64.11%), Postives = 159/209 (76.08%), Query Frame = 1
Query:    1 MSGGFEDLGLLPELVRATQELGWLLPSDVQDESIPLMLGGGDVMVAAETGSGKTGAFALPTLQLVHEIRRRAEGXXXXXXXXXXXXERE-------VSAAVLNVEDRSASISVSADGLRCQSRQEHAWGGVRGSVGARRGKVYFEATIEDEGVARVGWAARSATFDLGTDAFGWGFGGTGRKSHQRRFDEYGESFGKGDVLGCLLEVGG 606
            MSGGF DLGLLPELV+ATQ  GWLLPSDVQDE+IPLMLGGGDVMVAA+TGSGKTGAF LP +QL +EIR+R       XXXXXXXX          V  A L+VEDRS+ ++V   GL  QSR EH WGGVRG+VG RRGKVYFE T+ DEG+ARVG    +A+ DLGT + G+G+GGT ++S+ RRF+ YGE+FGKGDV+G +L V G
Sbjct:   21 MSGGFPDLGLLPELVKATQTAGWLLPSDVQDEAIPLMLGGGDVMVAAQTGSGKTGAFGLPAVQLAYEIRQRQLSGVGSXXXXXXXXXXXXXXXXPAVGPAALSVEDRSSWLAVDPTGLIAQSRNEHTWGGVRGTVGVRRGKVYFECTMRDEGIARVGAGTVAASLDLGTCSQGFGYGGTAKRSNSRRFEPYGETFGKGDVIGVMLNVTG 229          
BLAST of mRNA_M-pyrifera_M_contig78298.18407.1 vs. uniprot
Match: A0A5A8CCU4_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CCU4_CAFRO)

HSP 1 Score: 242 bits (618), Expect = 1.650e-70
Identity = 134/209 (64.11%), Postives = 159/209 (76.08%), Query Frame = 1
Query:    1 MSGGFEDLGLLPELVRATQELGWLLPSDVQDESIPLMLGGGDVMVAAETGSGKTGAFALPTLQLVHEIRRRAEGXXXXXXXXXXXXERE-------VSAAVLNVEDRSASISVSADGLRCQSRQEHAWGGVRGSVGARRGKVYFEATIEDEGVARVGWAARSATFDLGTDAFGWGFGGTGRKSHQRRFDEYGESFGKGDVLGCLLEVGG 606
            MSGGF DLGLLPELV+ATQ  GWLLPSDVQDE+IPLMLGGGDVMVAA+TGSGKTGAF LP +QL +EIR+R       XXXXXXXX          V  A L+VEDRS+ ++V   GL  QSR EH WGGVRG+VG RRGKVYFE T+ DEG+ARVG    +A+ DLGT + G+G+GGT ++S+ RRF+ YGE+FGKGDV+G +L V G
Sbjct:    1 MSGGFPDLGLLPELVKATQTAGWLLPSDVQDEAIPLMLGGGDVMVAAQTGSGKTGAFGLPAVQLAYEIRQRQLSGVGSXXXXXXXXXXXXXXXXPAVGPAALSVEDRSSWLAVDPTGLIAQSRNEHTWGGVRGTVGVRRGKVYFECTMRDEGIARVGAGTVAASLDLGTCSQGFGYGGTAKRSNSRRFEPYGETFGKGDVIGVMLNVTG 209          
BLAST of mRNA_M-pyrifera_M_contig78298.18407.1 vs. uniprot
Match: E1Z2R1_CHLVA (DEAD box protein 1 n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z2R1_CHLVA)

HSP 1 Score: 237 bits (604), Expect = 1.890e-70
Identity = 119/205 (58.05%), Postives = 153/205 (74.63%), Query Frame = 1
Query:   13 FEDLGLLPELVRATQELGWLLPSDVQDESIPLMLGGGDVMVAAETGSGKTGAFALPTLQLVHEIRRRAE-------GXXXXXXXXXXXXEREVSAAVLNVEDRSASISVSADGLRCQSRQEHAWGGVRGSVGARRGKVYFEATIEDEGVARVGWAARSATFDLGTDAFGWGFGGTGRKSHQRRFDEYGESFGKGDVLGCLLEVGG 606
            FE++G+ PEL++A +ELGW+LP+ +Q E++PL+LGGGDVM AAETGSGKTGAFALP LQ+VHE  R  +       G      XXXXX +++  A VLN EDR    ++S DGLRCQ+R E AWGG RG+VGA  GKVY+EAT+ DEG+ RVGW+ ++A+ DLGTD  G+GFGGTG+KSH R+FD YGE +G  D +GCLL+  G
Sbjct:    4 FEEVGVSPELIKAVEELGWMLPTPIQAEAVPLILGGGDVMAAAETGSGKTGAFALPVLQIVHETLRTRQQNRAAGTGSNGSGQXXXXXSDQQPPACVLNSEDRDPVFAISPDGLRCQARSEQAWGGCRGTVGAFGGKVYYEATVADEGLCRVGWSTQAASLDLGTDKHGFGFGGTGKKSHNRQFDAYGEPYGLHDTIGCLLDCQG 208          
BLAST of mRNA_M-pyrifera_M_contig78298.18407.1 vs. uniprot
Match: A0A2P6VLQ4_9CHLO (DEAD box protein 1 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VLQ4_9CHLO)

HSP 1 Score: 237 bits (604), Expect = 1.980e-70
Identity = 111/198 (56.06%), Postives = 143/198 (72.22%), Query Frame = 1
Query:   13 FEDLGLLPELVRATQELGWLLPSDVQDESIPLMLGGGDVMVAAETGSGKTGAFALPTLQLVHEIRRRAEGXXXXXXXXXXXXEREVSAAVLNVEDRSASISVSADGLRCQSRQEHAWGGVRGSVGARRGKVYFEATIEDEGVARVGWAARSATFDLGTDAFGWGFGGTGRKSHQRRFDEYGESFGKGDVLGCLLEVGG 606
            FE+ G+ PEL+ A  ELGW LP+ +Q E++PL+LGGGDVM AAETGSGKTGAFALP LQ+VHE  R  +               + S  VLN EDR A  ++S DGLRCQ+R E AWGG RG+VGA  G+VY+EAT+ DEG+ RVGW+ ++A+ DLGTD  G+G+GGTG+KSH R+F++YGE +G  D +GCLL+  G
Sbjct:    4 FEEAGVAPELISAVDELGWTLPTPIQAEAVPLILGGGDVMAAAETGSGKTGAFALPVLQIVHEALRTRQAARQAGGGGGTAPSAQRSLCVLNAEDRDAVFAISGDGLRCQARSEQAWGGCRGTVGAFSGRVYYEATVSDEGLCRVGWSTQAASLDLGTDKHGFGYGGTGKKSHVRQFEDYGEPYGLNDTVGCLLDSDG 201          
BLAST of mRNA_M-pyrifera_M_contig78298.18407.1 vs. uniprot
Match: A0A2P6U292_CHLSO (DEAD box protein 1 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U292_CHLSO)

HSP 1 Score: 238 bits (607), Expect = 7.750e-70
Identity = 114/199 (57.29%), Postives = 144/199 (72.36%), Query Frame = 1
Query:   13 FEDLGLLPELVRATQELGWLLPSDVQDESIPLMLGGGDVMVAAETGSGKTGAFALPTLQLVHE-IRRRAEGXXXXXXXXXXXXEREVSAAVLNVEDRSASISVSADGLRCQSRQEHAWGGVRGSVGARRGKVYFEATIEDEGVARVGWAARSATFDLGTDAFGWGFGGTGRKSHQRRFDEYGESFGKGDVLGCLLEVGG 606
            FE++G+ PEL+RA +ELGW LP+ +Q E +PL+LGGGD+M AAETGSGKTGAFALP LQ+VHE IR R                    A VLN EDR + +++S DGLRCQ+R E AWGGVRG+VGA  G+VY+EAT+ DEG+ RVGW+ ++A+ DLGTD   +GFGGTG+KSH R FD YGE +G  D +GCLL+  G
Sbjct:  194 FEEVGVAPELIRAVEELGWTLPTPIQAECVPLILGGGDIMAAAETGSGKTGAFALPVLQIVHEAIRTRQRSRQNAPAGGGNGGADAPPACVLNAEDRDSVVAISPDGLRCQARSEQAWGGVRGTVGAFGGRVYYEATVSDEGLCRVGWSTQAASLDLGTDRHSFGFGGTGKKSHNRSFDSYGEPYGLNDTVGCLLDCQG 392          
BLAST of mRNA_M-pyrifera_M_contig78298.18407.1 vs. uniprot
Match: D8TVA6_VOLCA (DEAD box protein 1 n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TVA6_VOLCA)

HSP 1 Score: 230 bits (586), Expect = 1.050e-67
Identity = 125/208 (60.10%), Postives = 156/208 (75.00%), Query Frame = 1
Query:   13 FEDLGLLPELVRATQELGWLLPSDVQDESIPLMLGGGDVMVAAETGSGKTGAFALPTLQLVHE-IRRRAEGXXXXXXXXXXXXEREVSAA------VLNVEDRSASISVSADGLRCQSRQEHAWGGVRGSVGARR---GKVYFEATIEDEGVARVGWAARSATFDLGTDAFGWGFGGTGRKSHQRRFDEYGESFGKGDVLGCLLEVGG 606
            FE+LG++PELV+A +ELGW+LPS VQ E+IPL+LGGGDVM AAETGSGKTGAFA+P LQ+VHE +R+R      XXXXXXXXX      A      VL+ EDR   ++VS+DG   QSR E +WGGVR ++G      GKVY+E T+ DEG++RVGW+  +A  DLGTD  G+GFGGTG+KSHQR+FD YGE FGKGDV+GC+L+  G
Sbjct:    4 FEELGVMPELVKAVEELGWMLPSPVQAEAIPLILGGGDVMAAAETGSGKTGAFAIPVLQIVHEALRQRVRSGAAXXXXXXXXXXXXXGVASPAAECVLSTEDRDLHLAVSSDGCTAQSRSEKSWGGVRATMGVFASCGGKVYYEVTVNDEGLSRVGWSCSTAALDLGTDRLGFGFGGTGKKSHQRQFDSYGEPFGKGDVIGCMLDCTG 211          
BLAST of mRNA_M-pyrifera_M_contig78298.18407.1 vs. uniprot
Match: A8IRS1_CHLRE (DEAD box protein 1 n=4 Tax=Chlamydomonas TaxID=3052 RepID=A8IRS1_CHLRE)

HSP 1 Score: 226 bits (575), Expect = 3.840e-66
Identity = 120/208 (57.69%), Postives = 146/208 (70.19%), Query Frame = 1
Query:   13 FEDLGLLPELVRATQELGWLLPSDVQDESIPLMLGGGDVMVAAETGSGKTGAFALPTLQLVHE-IRRRAEGXXXXXXXXXXXXEREVSA-------AVLNVEDRSASISVSADGLRCQSRQEHAWGGVRGSVGARR---GKVYFEATIEDEGVARVGWAARSATFDLGTDAFGWGFGGTGRKSHQRRFDEYGESFGKGDVLGCLLEVG 603
            FE+LG++PEL +A ++LGW+LPS VQ E+IPL+LGGGDVM AAETGSGKTGAFA+P LQ+VHE +R+RA          XXXX              VL+ EDR   ++VS DGL  QSR E AWGGVRGSVG      GKVY+E T+ DEG+ RVGW+  +A  +LGTD  GWGFGGTG+KSH R+FD YGE F   DV+GCLL+ G
Sbjct:    4 FEELGVMPELAKAVEDLGWMLPSPVQAEAIPLILGGGDVMAAAETGSGKTGAFAIPMLQIVHETLRQRARSGSAASTSGXXXXXXXXXXXSPAAVPCVLSSEDRELHVAVSPDGLSAQSRSEKAWGGVRGSVGVFASCGGKVYYEVTVTDEGLCRVGWSCPTAALELGTDRLGWGFGGTGKKSHNRQFDSYGEPFALNDVVGCLLDCG 211          
BLAST of mRNA_M-pyrifera_M_contig78298.18407.1 vs. uniprot
Match: A0A150H4J5_GONPE (DEAD box protein 1 n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H4J5_GONPE)

HSP 1 Score: 224 bits (571), Expect = 4.720e-66
Identity = 125/213 (58.69%), Postives = 158/213 (74.18%), Query Frame = 1
Query:    1 MSGGFEDLGLLPELVRATQELGWLLPSDVQDESIPLMLGGGDVMVAAETGSGKTGAFALPTLQLVHE-IRRRAEGXXXXXXXXXXXXEREVSA-------AVLNVEDRSASISVSADGLRCQSRQEHAWGGVRGSVGARRG---KVYFEATIEDEGVARVGWAARSATFDLGTDAFGWGFGGTGRKSHQRRFDEYGESFGKGDVLGCLLEVGG 606
            M+G FE+LG++PEL +A ++LGW+LP+ VQ E+IPL+LGGGDVM AAETGSGKTGAFA+P LQ+VHE +R+R     XXXXXXXXXX               L+ EDR   ++VSADG+  QSR E +WGGVR SVG   G   KVY+E T+ DEG++RVGW+  +A+ DLGTD   +GFGGTG+KSH R+FDEYGE FG+GDV+GCLL+  G
Sbjct:    1 MAGAFEELGVMPELCKAVEDLGWMLPTPVQVEAIPLILGGGDVMAAAETGSGKTGAFAIPVLQIVHEALRQRTRSGAXXXXXXXXXXXXXXXXXXXXXXECCLSSEDRELHVAVSADGMVAQSRSEKSWGGVRASVGVFAGCGGKVYYEVTVTDEGLSRVGWSTPTASLDLGTDRQSFGFGGTGKKSHARQFDEYGEPFGQGDVVGCLLDCSG 213          
BLAST of mRNA_M-pyrifera_M_contig78298.18407.1 vs. uniprot
Match: A0A8J4EXT5_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4EXT5_9CHLO)

HSP 1 Score: 219 bits (558), Expect = 4.640e-65
Identity = 116/204 (56.86%), Postives = 147/204 (72.06%), Query Frame = 1
Query:   13 FEDLGLLPELVRATQELGWLLPSDVQDESIPLMLGGGDVMVAAETGSGKTGAFALPTLQLVHE-IRRRAEGXXXXXXXXXXXXEREVSAA-----VLNVEDRSASISVSADGLRCQSRQEHAWGGVR--GSVGARRG-KVYFEATIEDEGVARVGWAARSATFDLGTDAFGWGFGGTGRKSHQRRFDEYGESFGKGDVLGCLLE 597
            FE+LG++PEL +A +ELGW LPS VQ E+IPL+LGGGDVM AAETGSGKTGAFA+P LQ+VHE +R+R             XX     A      VLN+EDR  ++++S DG   QSR E +WGGVR  G V A  G KVY+E T+ DEG++RVGW+  +A+ DLGTD  G+GFGGTG+KSHQR+FD Y E FG+GDV+GC+L+
Sbjct:    4 FEELGVMPELCKAVEELGWTLPSPVQAEAIPLILGGGDVMAAAETGSGKTGAFAIPVLQIVHEALRQRVRSGTAASISSRGXXXXXXXANATVDWVLNIEDRDLNVALSPDGCTAQSRSEKSWGGVRATGGVFASCGDKVYYEVTVNDEGLSRVGWSCPTASRDLGTDRLGFGFGGTGKKSHQRQFDAYAEPFGQGDVIGCMLD 207          
BLAST of mRNA_M-pyrifera_M_contig78298.18407.1 vs. uniprot
Match: A0A8J4B4K7_9CHLO (DEAD box protein 1 n=3 Tax=Volvox TaxID=3066 RepID=A0A8J4B4K7_9CHLO)

HSP 1 Score: 219 bits (558), Expect = 1.120e-63
Identity = 116/204 (56.86%), Postives = 147/204 (72.06%), Query Frame = 1
Query:   13 FEDLGLLPELVRATQELGWLLPSDVQDESIPLMLGGGDVMVAAETGSGKTGAFALPTLQLVHE-IRRRAEGXXXXXXXXXXXXEREVSAA-----VLNVEDRSASISVSADGLRCQSRQEHAWGGVR--GSVGARRG-KVYFEATIEDEGVARVGWAARSATFDLGTDAFGWGFGGTGRKSHQRRFDEYGESFGKGDVLGCLLE 597
            FE+LG++PEL +A +ELGW LPS VQ E+IPL+LGGGDVM AAETGSGKTGAFA+P LQ+VHE +R+R             XX     A      VLN+EDR  ++++S DG   QSR E +WGGVR  G V A  G KVY+E T+ DEG++RVGW+  +A+ DLGTD  G+GFGGTG+KSHQR+FD Y E FG+GDV+GC+L+
Sbjct:    4 FEELGVMPELCKAVEELGWTLPSPVQAEAIPLILGGGDVMAAAETGSGKTGAFAIPVLQIVHEALRQRVRSGTAASISSRGXXXXXXXANATVDWVLNIEDRDLNVALSPDGCTAQSRSEKSWGGVRATGGVFASCGDKVYYEVTVNDEGLSRVGWSCPTASRDLGTDRLGFGFGGTGKKSHQRQFDAYAEPFGQGDVIGCMLD 207          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78298.18407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0PF08_CAFRO1.060e-7464.11Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A5A8CCU4_CAFRO1.650e-7064.11Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
E1Z2R1_CHLVA1.890e-7058.05DEAD box protein 1 n=1 Tax=Chlorella variabilis Ta... [more]
A0A2P6VLQ4_9CHLO1.980e-7056.06DEAD box protein 1 n=1 Tax=Micractinium conductrix... [more]
A0A2P6U292_CHLSO7.750e-7057.29DEAD box protein 1 n=1 Tax=Chlorella sorokiniana T... [more]
D8TVA6_VOLCA1.050e-6760.10DEAD box protein 1 n=1 Tax=Volvox carteri f. nagar... [more]
A8IRS1_CHLRE3.840e-6657.69DEAD box protein 1 n=4 Tax=Chlamydomonas TaxID=305... [more]
A0A150H4J5_GONPE4.720e-6658.69DEAD box protein 1 n=1 Tax=Gonium pectorale TaxID=... [more]
A0A8J4EXT5_9CHLO4.640e-6556.86Uncharacterized protein n=1 Tax=Volvox africanus T... [more]
A0A8J4B4K7_9CHLO1.120e-6356.86DEAD box protein 1 n=3 Tax=Volvox TaxID=3066 RepID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78298contigM-pyrifera_M_contig78298:210..987 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score237.3
Seed ortholog evalue6.4e-60
Seed eggNOG ortholog554065.XP_005851810.1
KEGG koko:K13177
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the DEAD box helicase family
EggNOG OGs34J79@3041,37YIH@33090,COG0513@1,KOG0349@2759
EC3.6.4.13
COG Functional cat.A
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016,ko03041
Exons3
Model size606
Cds size606
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78298.18407.1prot_M-pyrifera_M_contig78298.18407.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78298 210..987 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816684.6583858-CDS-M-pyrifera_M_contig78298:209..2801622816684.6583858-CDS-M-pyrifera_M_contig78298:209..280Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78298 210..280 +
1692278118.2525973-CDS-M-pyrifera_M_contig78298:209..2801692278118.2525973-CDS-M-pyrifera_M_contig78298:209..280Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78298 210..280 +
1622816684.6770637-CDS-M-pyrifera_M_contig78298:367..4311622816684.6770637-CDS-M-pyrifera_M_contig78298:367..431Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78298 368..431 +
1692278118.2708673-CDS-M-pyrifera_M_contig78298:367..4311692278118.2708673-CDS-M-pyrifera_M_contig78298:367..431Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78298 368..431 +
1622816684.6909592-CDS-M-pyrifera_M_contig78298:516..9871622816684.6909592-CDS-M-pyrifera_M_contig78298:516..987Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78298 517..987 +
1692278118.2794116-CDS-M-pyrifera_M_contig78298:516..9871692278118.2794116-CDS-M-pyrifera_M_contig78298:516..987Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78298 517..987 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78298.18407.1

>prot_M-pyrifera_M_contig78298.18407.1 ID=prot_M-pyrifera_M_contig78298.18407.1|Name=mRNA_M-pyrifera_M_contig78298.18407.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=202bp
MSGGFEDLGLLPELVRATQELGWLLPSDVQDESIPLMLGGGDVMVAAETG
SGKTGAFALPTLQLVHEIRRRAEGGGEGAAGGGGGGEREVSAAVLNVEDR
SASISVSADGLRCQSRQEHAWGGVRGSVGARRGKVYFEATIEDEGVARVG
WAARSATFDLGTDAFGWGFGGTGRKSHQRRFDEYGESFGKGDVLGCLLEV
GG
back to top

mRNA from alignment at M-pyrifera_M_contig78298:210..987+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78298.18407.1 ID=mRNA_M-pyrifera_M_contig78298.18407.1|Name=mRNA_M-pyrifera_M_contig78298.18407.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=778bp|location=Sequence derived from alignment at M-pyrifera_M_contig78298:210..987+ (Macrocystis pyrifera P11B4 male)
ATGTCTGGAGGTTTCGAAGATTTGGGTCTTCTACCAGAGCTCGTGCGAGC TACGCAGGAACTCGGATGGCTGTAATTCCACCCTCCACCCCCCACCGCCC AACCCTTTCCCCTACCCCCGAAAACACCGCCTCCAAACCATTTCCCTCTG TTTTGCAGGCTTCCGAGTGACGTTCAGGATGAATCGATTCCGCTGATGTT GGGCGGTGGCGATGTGATGGTGGTAGGTGTCGAGGGTATTGGGATGGGTT GTTTGGATTTGGTGGGAAATGCGCATCATCCGAACGCTGTGTTGTCTTGG TTTGCAGGCTGCCGAGACTGGGAGTGGTAAGACGGGCGCGTTTGCGCTTC CGACGCTGCAGCTGGTGCATGAGATCCGCCGCCGTGCCGAGGGAGGCGGA GAGGGGGCTGCAGGGGGCGGAGGCGGCGGGGAGAGGGAGGTGAGCGCCGC TGTGTTGAACGTGGAGGACCGCTCGGCGTCGATTTCGGTGTCGGCGGACG GGCTGCGCTGCCAGAGCCGGCAGGAGCACGCGTGGGGCGGCGTGCGAGGC TCGGTCGGGGCGCGGCGCGGAAAAGTGTACTTTGAAGCCACCATCGAGGA CGAGGGCGTGGCGCGAGTGGGGTGGGCGGCGCGCAGCGCGACGTTCGACC TGGGCACCGACGCGTTCGGGTGGGGTTTCGGCGGGACCGGGAGAAAAAGC CACCAACGCAGATTTGACGAGTATGGGGAGTCGTTCGGCAAAGGGGACGT GTTGGGCTGTTTGCTCGAGGTGGGCGGG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig78298:210..987+

>mRNA_M-pyrifera_M_contig78298.18407.1 ID=mRNA_M-pyrifera_M_contig78298.18407.1|Name=mRNA_M-pyrifera_M_contig78298.18407.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1212bp|location=Sequence derived from alignment at M-pyrifera_M_contig78298:210..987+ (Macrocystis pyrifera P11B4 male)
ATGTCTGGAGGTTTCGAAGATTTGGGTCTTCTACCAGAGCTCGTGCGAGC
TACGCAGGAACTCGGATGGCTATGTCTGGAGGTTTCGAAGATTTGGGTCT
TCTACCAGAGCTCGTGCGAGCTACGCAGGAACTCGGATGGCTGCTTCCGA
GTGACGTTCAGGATGAATCGATTCCGCTGATGTTGGGCGGTGGCGATGTG
ATGGTGGCTTCCGAGTGACGTTCAGGATGAATCGATTCCGCTGATGTTGG
GCGGTGGCGATGTGATGGTGGCTGCCGAGACTGGGAGTGGTAAGACGGGC
GCGTTTGCGCTTCCGACGCTGCAGCTGGTGCATGAGATCCGCCGCCGTGC
CGAGGGAGGCGGAGAGGGGGCTGCAGGGGGCGGAGGCGGCGGGGAGAGGG
AGGTGAGCGCCGCTGTGTTGAACGTGGAGGACCGCTCGGCGTCGATTTCG
GTGTCGGCGGACGGGCTGCGCTGCCAGAGCCGGCAGGAGCACGCGTGGGG
CGGCGTGCGAGGCTCGGTCGGGGCGCGGCGCGGAAAAGTGTACTTTGAAG
CCACCATCGAGGACGAGGGCGTGGCGCGAGTGGGGTGGGCGGCGCGCAGC
GCGACGTTCGACCTGGGCACCGACGCGTTCGGGTGGGGTTTCGGCGGGAC
CGGGAGAAAAAGCCACCAACGCAGATTTGACGAGTATGGGGAGTCGTTCG
GCAAAGGGGACGTGTTGGGCTGTTTGCTCGAGGTGGGCGGGGCTGCCGAG
ACTGGGAGTGGTAAGACGGGCGCGTTTGCGCTTCCGACGCTGCAGCTGGT
GCATGAGATCCGCCGCCGTGCCGAGGGAGGCGGAGAGGGGGCTGCAGGGG
GCGGAGGCGGCGGGGAGAGGGAGGTGAGCGCCGCTGTGTTGAACGTGGAG
GACCGCTCGGCGTCGATTTCGGTGTCGGCGGACGGGCTGCGCTGCCAGAG
CCGGCAGGAGCACGCGTGGGGCGGCGTGCGAGGCTCGGTCGGGGCGCGGC
GCGGAAAAGTGTACTTTGAAGCCACCATCGAGGACGAGGGCGTGGCGCGA
GTGGGGTGGGCGGCGCGCAGCGCGACGTTCGACCTGGGCACCGACGCGTT
CGGGTGGGGTTTCGGCGGGACCGGGAGAAAAAGCCACCAACGCAGATTTG
ACGAGTATGGGGAGTCGTTCGGCAAAGGGGACGTGTTGGGCTGTTTGCTC
GAGGTGGGCGGG
back to top