mRNA_M-pyrifera_M_contig77796.18301.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77796.18301.1
Unique NamemRNA_M-pyrifera_M_contig77796.18301.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig77796.18301.1 vs. uniprot
Match: UPI00190A5CD4 (RICIN domain-containing protein n=1 Tax=Streptomyces sp. MBT65 TaxID=1488395 RepID=UPI00190A5CD4)

HSP 1 Score: 53.9 bits (128), Expect = 8.400e-7
Identity = 24/57 (42.11%), Postives = 34/57 (59.65%), Query Frame = 1 
Query:    4 ILSKMNNMCLDIEGGGAFAGVPVVLKECNGTNTQKWTMDAQTGLIQSQANTSLCLDA 174
            I++   N CLDI  G    G  VV   C  ++TQ W +DA  G++QS A++ LCLD+
Sbjct:  372 IVNVSTNRCLDIRDGDLTEGTDVVTAPCTSSDTQLWRVDAARGVVQSSADSDLCLDS 428
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BLAST of mRNA_M-pyrifera_M_contig77796.18301.1 vs. uniprot
Match: A0A6B3BYU7_9ACTN (Ricin-type beta-trefoil lectin domain protein n=2 Tax=unclassified Streptomyces TaxID=2593676 RepID=A0A6B3BYU7_9ACTN)

HSP 1 Score: 52.8 bits (125), Expect = 2.150e-6
Identity = 25/58 (43.10%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:    4 ILSKMNNMCLDIEGGGAFAGVPVVLKECNGTN-TQKWTMDAQTGLIQSQANTSLCLDA 174
            +++  +  CLDI GG    G  VV   C+ +  TQ+W +DA +GL++S ANT LCLD+
Sbjct:  410 VVNVASGRCLDIRGGELEKGTDVVTATCSASAATQRWQVDAGSGLLRSSANTDLCLDS 467
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BLAST of mRNA_M-pyrifera_M_contig77796.18301.1 vs. uniprot
Match: A0A7G1NW64_9ACTN (Hydrolase n=2 Tax=Streptomyces aurantiacus group TaxID=2838335 RepID=A0A7G1NW64_9ACTN)

HSP 1 Score: 52.0 bits (123), Expect = 4.040e-6
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:   22 NMCLDIEGGGAFAGVPVVLKECNGTNTQKWTMDAQTGLIQSQANTSLCLDA 174
            ++CLDI+GG A AGV   L  C+   TQKWT +   GL++S A+  LCLD+
Sbjct:  398 DLCLDIKGGTAKAGVGAELDTCSAAGTQKWTYEKD-GLLRSAADPGLCLDS 447
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BLAST of mRNA_M-pyrifera_M_contig77796.18301.1 vs. uniprot
Match: UPI001AD62C77 (ricin-type beta-trefoil lectin domain protein n=2 Tax=Streptomyces TaxID=1883 RepID=UPI001AD62C77)

HSP 1 Score: 51.6 bits (122), Expect = 5.500e-6
Identity = 22/57 (38.60%), Postives = 34/57 (59.65%), Query Frame = 1 
Query:    4 ILSKMNNMCLDIEGGGAFAGVPVVLKECNGTNTQKWTMDAQTGLIQSQANTSLCLDA 174
            +++     CLDI  G    G  VV   C+G+ TQ+W +D   G++QS A++ LCLD+
Sbjct:  383 VVNVSTGRCLDILDGDLSNGTDVVTAPCSGSTTQRWRVDTARGVVQSYADSGLCLDS 439
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BLAST of mRNA_M-pyrifera_M_contig77796.18301.1 vs. uniprot
Match: UPI0005BD9EC2 (RICIN domain-containing protein n=1 Tax=Streptomyces xylophagus TaxID=285514 RepID=UPI0005BD9EC2)

HSP 1 Score: 51.2 bits (121), Expect = 7.520e-6
Identity = 21/57 (36.84%), Postives = 34/57 (59.65%), Query Frame = 1 
Query:    4 ILSKMNNMCLDIEGGGAFAGVPVVLKECNGTNTQKWTMDAQTGLIQSQANTSLCLDA 174
            +++     CLDI  G    G  V+   C+ +NTQ W +D+  G++QS A++ LCLD+
Sbjct:  373 VVNVSTGRCLDIRDGDLTEGTDVITAACSSSNTQLWRVDSARGVVQSGADSDLCLDS 429
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BLAST of mRNA_M-pyrifera_M_contig77796.18301.1 vs. uniprot
Match: A0A250VIJ2_STROL (Hydrolase n=15 Tax=Actinomycetia TaxID=1760 RepID=A0A250VIJ2_STROL)

HSP 1 Score: 51.2 bits (121), Expect = 7.520e-6
Identity = 21/57 (36.84%), Postives = 34/57 (59.65%), Query Frame = 1 
Query:    4 ILSKMNNMCLDIEGGGAFAGVPVVLKECNGTNTQKWTMDAQTGLIQSQANTSLCLDA 174
            +++  + +CLDI  G    G  VV   C    TQ+W +D+  G++QS A++ LCLD+
Sbjct:  379 VVNLASGLCLDIRDGDLTQGTDVVTAPCTSARTQRWRVDSGRGVLQSYADSDLCLDS 435
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BLAST of mRNA_M-pyrifera_M_contig77796.18301.1 vs. uniprot
Match: A0A1H5D535_9ACTN (Ricin-type beta-trefoil lectin domain-containing protein n=4 Tax=Streptomyces TaxID=1883 RepID=A0A1H5D535_9ACTN)

HSP 1 Score: 50.8 bits (120), Expect = 1.030e-5
Identity = 21/57 (36.84%), Postives = 32/57 (56.14%), Query Frame = 1 
Query:    4 ILSKMNNMCLDIEGGGAFAGVPVVLKECNGTNTQKWTMDAQTGLIQSQANTSLCLDA 174
            I++     CLD+  G    G  V+   C  + TQ W +DA  G++QS A++ LCLD+
Sbjct:  387 IVNVSTGRCLDVRDGDLTEGTDVITASCTSSGTQLWRVDATRGVVQSSADSDLCLDS 443
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BLAST of mRNA_M-pyrifera_M_contig77796.18301.1 vs. uniprot
Match: UPI00068BEB32 (RICIN domain-containing protein n=1 Tax=Streptomyces sp. NRRL F-525 TaxID=1463861 RepID=UPI00068BEB32)

HSP 1 Score: 49.7 bits (117), Expect = 2.640e-5
Identity = 21/57 (36.84%), Postives = 33/57 (57.89%), Query Frame = 1 
Query:    4 ILSKMNNMCLDIEGGGAFAGVPVVLKECNGTNTQKWTMDAQTGLIQSQANTSLCLDA 174
            I++     CLDI  G    G  V+   C  ++TQ W +D+  G++QS A++ LCLD+
Sbjct:  377 IVNVSTGRCLDIRDGDLTKGTDVITAPCTSSDTQLWRVDSGRGVVQSSADSDLCLDS 433
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BLAST of mRNA_M-pyrifera_M_contig77796.18301.1 vs. uniprot
Match: UPI00124AF52A (ricin-type beta-trefoil lectin domain protein n=1 Tax=Streptomyces albicerus TaxID=2569859 RepID=UPI00124AF52A)

HSP 1 Score: 49.7 bits (117), Expect = 2.650e-5
Identity = 23/51 (45.10%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:   22 NMCLDIEGGGAFAGVPVVLKECNGTNTQKWTMDAQTGLIQSQANTSLCLDA 174
            ++CLDI+GG A AGV   L+ C+   TQ+W+ + + GL++S  N  LCLD+
Sbjct:  403 DLCLDIKGGTAKAGVGTKLETCSAAGTQRWSYE-EDGLLRSVDNPELCLDS 452
[Close]
BLAST of mRNA_M-pyrifera_M_contig77796.18301.1 vs. uniprot
Match: UPI001664BBAF (RICIN domain-containing protein n=1 Tax=Streptomyces lacrimifluminis TaxID=1500077 RepID=UPI001664BBAF)

HSP 1 Score: 48.9 bits (115), Expect = 4.940e-5
Identity = 23/58 (39.66%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:    4 ILSKMNNMCLDIEGGGAFAGVPVVLKECNGTN-TQKWTMDAQTGLIQSQANTSLCLDA 174
            +++  +  CLDI GG       VV   C+G+  TQ+W +DA +GL++S A++ LCLD+
Sbjct:  402 VVNVASGRCLDIRGGVLEKNTDVVTAPCSGSAATQRWQVDADSGLLRSGADSDLCLDS 459
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77796.18301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
UPI00190A5CD48.400e-742.11RICIN domain-containing protein n=1 Tax=Streptomyc... [more]
A0A6B3BYU7_9ACTN2.150e-643.10Ricin-type beta-trefoil lectin domain protein n=2 ... [more]
A0A7G1NW64_9ACTN4.040e-649.02Hydrolase n=2 Tax=Streptomyces aurantiacus group T... [more]
UPI001AD62C775.500e-638.60ricin-type beta-trefoil lectin domain protein n=2 ... [more]
UPI0005BD9EC27.520e-636.84RICIN domain-containing protein n=1 Tax=Streptomyc... [more]
A0A250VIJ2_STROL7.520e-636.84Hydrolase n=15 Tax=Actinomycetia TaxID=1760 RepID=... [more]
A0A1H5D535_9ACTN1.030e-536.84Ricin-type beta-trefoil lectin domain-containing p... [more]
UPI00068BEB322.640e-536.84RICIN domain-containing protein n=1 Tax=Streptomyc... [more]
UPI00124AF52A2.650e-545.10ricin-type beta-trefoil lectin domain protein n=1 ... [more]
UPI001664BBAF4.940e-539.66RICIN domain-containing protein n=1 Tax=Streptomyc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77796contigM-pyrifera_M_contig77796:727..921 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size180
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816679.1073306-CDS-M-pyrifera_M_contig77796:726..9061622816679.1073306-CDS-M-pyrifera_M_contig77796:726..906Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77796 727..906 -
1692278115.0056255-CDS-M-pyrifera_M_contig77796:726..9061692278115.0056255-CDS-M-pyrifera_M_contig77796:726..906Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77796 727..906 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816679.1211398-UTR-M-pyrifera_M_contig77796:906..9211622816679.1211398-UTR-M-pyrifera_M_contig77796:906..921Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig77796 907..921 -
1692278115.0252619-UTR-M-pyrifera_M_contig77796:906..9211692278115.0252619-UTR-M-pyrifera_M_contig77796:906..921Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig77796 907..921 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77796.18301.1prot_M-pyrifera_M_contig77796.18301.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77796 727..906 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77796.18301.1

>prot_M-pyrifera_M_contig77796.18301.1 ID=prot_M-pyrifera_M_contig77796.18301.1|Name=mRNA_M-pyrifera_M_contig77796.18301.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=60bp
MNNMCLDIEGGGAFAGVPVVLKECNGTNTQKWTMDAQTGLIQSQANTSLC
LDAGSTGGGG
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mRNA from alignment at M-pyrifera_M_contig77796:727..921-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77796.18301.1 ID=mRNA_M-pyrifera_M_contig77796.18301.1|Name=mRNA_M-pyrifera_M_contig77796.18301.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=195bp|location=Sequence derived from alignment at M-pyrifera_M_contig77796:727..921- (Macrocystis pyrifera P11B4 male)
ACGATTTTGTCGAAGATGAACAACATGTGCTTGGATATCGAAGGTGGTGG
CGCATTTGCAGGAGTTCCTGTGGTATTGAAGGAATGTAATGGAACAAATA
CTCAGAAATGGACCATGGATGCGCAGACAGGCTTGATTCAATCGCAAGCA
AACACATCTCTTTGTCTTGATGCCGGATCCACTGGAGGTGGGGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77796:727..921-

>mRNA_M-pyrifera_M_contig77796.18301.1 ID=mRNA_M-pyrifera_M_contig77796.18301.1|Name=mRNA_M-pyrifera_M_contig77796.18301.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig77796:727..921- (Macrocystis pyrifera P11B4 male)
ATGAACAACATGTGCTTGGATATCGAAGGTGGTGGCGCATTTGCAGGAGT
TCCTGTGGTATTGAAGGAATGTAATGGAACAAATACTCAGAAATGGACCA
TGGATGCGCAGACAGGCTTGATTCAATCGCAAGCAAACACATCTCTTTGT
CTTGATGCCGGATCCACTGGAGGTGGGGGAATGAACAACATGTGCTTGGA
TATCGAAGGTGGTGGCGCATTTGCAGGAGTTCCTGTGGTATTGAAGGAAT
GTAATGGAACAAATACTCAGAAATGGACCATGGATGCGCAGACAGGCTTG
ATTCAATCGCAAGCAAACACATCTCTTTGTCTTGATGCCGGATCCACTGG
AGGTGGGGGA
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