mRNA_M-pyrifera_M_contig77763.18292.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77763.18292.1
Unique NamemRNA_M-pyrifera_M_contig77763.18292.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig77763.18292.1 vs. uniprot
Match: D7G934_ECTSI (Haloacid dehalogenase-like hydrolase family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G934_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 9.350e-14
Identity = 33/43 (76.74%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    1 MAAYVKTRHPDVNTVYMVGEDGLEEELGMVGLKIAKEEARPAP 129
            +AAYVK  HPDV TVYM+GE+GLEEEL MVGL++ KEEARPAP
Sbjct:  103 IAAYVKLSHPDVQTVYMIGEEGLEEELEMVGLRVVKEEARPAP 145
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77763.18292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G934_ECTSI9.350e-1476.74Haloacid dehalogenase-like hydrolase family protei... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77763contigM-pyrifera_M_contig77763:550..678 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue5.8e-11
Seed eggNOG ortholog2880.D7G934
KEGG rclassRC00017,RC00151
KEGG koko:K01101,ko:K19269
KEGG ReactionR01334,R03024
KEGG Pathwayko00627,ko00630,ko01100,ko01110,ko01120,ko01130,ko01200,map00627,map00630,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00532
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.phosphoglycolate phosphatase activity
EggNOG OGsCOG0647@1,KOG2882@2759
EC3.1.3.18,3.1.3.41,3.1.3.48
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009
Exons1
Model size129
Cds size129
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816678.7765396-CDS-M-pyrifera_M_contig77763:549..6781622816678.7765396-CDS-M-pyrifera_M_contig77763:549..678Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77763 550..678 -
1692278114.8306615-CDS-M-pyrifera_M_contig77763:549..6781692278114.8306615-CDS-M-pyrifera_M_contig77763:549..678Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77763 550..678 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77763.18292.1prot_M-pyrifera_M_contig77763.18292.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77763 550..678 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77763.18292.1

>prot_M-pyrifera_M_contig77763.18292.1 ID=prot_M-pyrifera_M_contig77763.18292.1|Name=mRNA_M-pyrifera_M_contig77763.18292.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=43bp
MAAYVKTRHPDVNTVYMVGEDGLEEELGMVGLKIAKEEARPAP
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mRNA from alignment at M-pyrifera_M_contig77763:550..678-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77763.18292.1 ID=mRNA_M-pyrifera_M_contig77763.18292.1|Name=mRNA_M-pyrifera_M_contig77763.18292.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=129bp|location=Sequence derived from alignment at M-pyrifera_M_contig77763:550..678- (Macrocystis pyrifera P11B4 male)
ATGGCAGCCTACGTGAAGACCCGCCACCCCGACGTGAACACCGTCTATAT
GGTGGGGGAGGACGGGCTCGAGGAAGAGCTGGGGATGGTGGGGTTGAAGA
TTGCCAAGGAAGAGGCGAGGCCGGCCCCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77763:550..678-

>mRNA_M-pyrifera_M_contig77763.18292.1 ID=mRNA_M-pyrifera_M_contig77763.18292.1|Name=mRNA_M-pyrifera_M_contig77763.18292.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=258bp|location=Sequence derived from alignment at M-pyrifera_M_contig77763:550..678- (Macrocystis pyrifera P11B4 male)
ATGGCAGCCTACGTGAAGACCCGCCACCCCGACGTGAACACCGTCTATAT
GGTGGGGGAGGACGGGCTCGAGGAAGAGCTGGGGATGGTGGGGTTGAAGA
TTGCCAAGGAAGAGGCGAGGCCGGCCCCGATGGCAGCCTACGTGAAGACC
CGCCACCCCGACGTGAACACCGTCTATATGGTGGGGGAGGACGGGCTCGA
GGAAGAGCTGGGGATGGTGGGGTTGAAGATTGCCAAGGAAGAGGCGAGGC
CGGCCCCG
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