mRNA_M-pyrifera_M_contig77571.18254.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig77571.18254.1 vs. uniprot
Match: A0A835ZGN1_9STRA (Splicing factor U2AF subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGN1_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 1.290e-20 Identity = 51/99 (51.52%), Postives = 69/99 (69.70%), Query Frame = 1 Query: 1 APTRVLRLSHMVTSKDLEDPDTVEDIEDDAREELKNFGSLKTVVIPTRG-AGMGQVFAHYEDKEAAQAAAKAVAGRKFDGRIIHAEFFDEDRFARQDLA 294 APTRVL L +MV +DL+D DI +D R+E K +G LKTV+IP G G+G+VF Y + + AQAAA A+AGR+F +I+ A++ DE RFA +DLA Sbjct: 292 APTRVLVLMNMVGEEDLKDDQEYTDILEDVRDECKQYGELKTVIIPRPGETGVGKVFLEYAEVQQAQAAAMALAGRQFASKIVKAQYHDESRFAARDLA 390
BLAST of mRNA_M-pyrifera_M_contig77571.18254.1 vs. uniprot
Match: A0A8H4EKM5_GIGMA (U2 snRNP auxilliary factor, large subunit, splicing factor n=2 Tax=Gigaspora TaxID=4873 RepID=A0A8H4EKM5_GIGMA) HSP 1 Score: 73.9 bits (180), Expect = 2.870e-13 Identity = 42/100 (42.00%), Postives = 61/100 (61.00%), Query Frame = 1 Query: 4 PTRVLRLSHMVTSKDLEDPDTVEDIEDDAREELKNFGSLKTVVIPTRGA----GMGQVFAHYEDKEAAQAAAKAVAGRKFDGRIIHAEFFDEDRFARQDL 291 PT VL+L +MVT ++L D + EDI DD REE FG + + IP G+ G+G++F +E EAA AA +A+AGRKF R + + DE+ + +D Sbjct: 569 PTTVLQLLNMVTPEELVDDEEYEDIVDDVREECSKFGRVLDMKIPRPGSASLSGVGKIFVRFESIEAAGAALRALAGRKFAERTVLTSYIDEEVYDAEDF 668
BLAST of mRNA_M-pyrifera_M_contig77571.18254.1 vs. uniprot
Match: A0A137PCH5_CONC2 (Splicing factor U2AF subunit n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137PCH5_CONC2) HSP 1 Score: 73.2 bits (178), Expect = 5.250e-13 Identity = 40/101 (39.60%), Postives = 61/101 (60.40%), Query Frame = 1 Query: 4 PTRVLRLSHMVTSKDLEDPDTVEDIEDDAREELKNFGSLKTVVIPT-----RGAGMGQVFAHYEDKEAAQAAAKAVAGRKFDGRIIHAEFFDEDRFARQDL 291 PTR+L L +MVT ++LED + E+I D EE FG + ++ IP + +G+VF Y++ A K++AGRKF RI+ A +++ED+FA DL Sbjct: 436 PTRILLLLNMVTPEELEDDEEYEEILADIEEEATKFGKVLSIKIPKDKTKYNESAIGKVFIEYDNDTQCAVALKSLAGRKFSDRIVLASYYNEDKFANDDL 536
BLAST of mRNA_M-pyrifera_M_contig77571.18254.1 vs. uniprot
Match: A0A6G0WM79_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WM79_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 5.780e-13 Identity = 40/102 (39.22%), Postives = 57/102 (55.88%), Query Frame = 1 Query: 4 PTRVLRLSHMVTSKDLEDPDTVEDIEDDAREELKNFGSLKTVVIPTRGA-----GMGQVFAHYEDKEAAQAAAKAVAGRKFDGRIIHAEFFDEDRFARQDLA 294 PT V++L +MV + +LED D D+++D EE FG + + IP G+G+VF +ED AQAA KA+ GRKF G I+ + +F QD A Sbjct: 267 PTPVIQLGNMVQASELEDDDEFADLKEDIEEECNKFGKVVALEIPRPNGNETVLGVGKVFVRFEDISGAQAAIKALKGRKFGGNIVEVSYMSLAKFETQDFA 368
BLAST of mRNA_M-pyrifera_M_contig77571.18254.1 vs. uniprot
Match: A0A4S2MPL6_9PEZI (Splicing factor U2AF subunit n=1 Tax=Ascodesmis nigricans TaxID=341454 RepID=A0A4S2MPL6_9PEZI) HSP 1 Score: 71.6 bits (174), Expect = 1.830e-12 Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = 1 Query: 7 TRVLRLSHMVTSKDLEDPDTVEDIEDDAREELKNFGSLKTVVIPTRGAG------MGQVFAHYEDKEAAQAAAKAVAGRKFDGRIIHAEFFDEDRF 276 TRVL+L +MVT ++L D + E+I +D REE +G L + IP G G +G++F +ED EAA AA KA+AGRKF R + +F E+ + Sbjct: 449 TRVLQLLNMVTPEELMDNEEYEEICEDIREECSKYGKLVDMKIPRPGGGSKQVVGVGKIFVRFEDVEAANAALKALAGRKFADRTVVCTYFSEENY 544
BLAST of mRNA_M-pyrifera_M_contig77571.18254.1 vs. uniprot
Match: A0A485KWN6_9STRA (Aste57867_12612 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KWN6_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 4.660e-12 Identity = 38/102 (37.25%), Postives = 57/102 (55.88%), Query Frame = 1 Query: 4 PTRVLRLSHMVTSKDLEDPDTVEDIEDDAREELKNFGSLKTVVIPTRGA-----GMGQVFAHYEDKEAAQAAAKAVAGRKFDGRIIHAEFFDEDRFARQDLA 294 PT V++L +MV + +LED + D+++D EE FG + + IP G+G+VF +ED A+AA KA+ GRKF G I+ + +F QD A Sbjct: 446 PTVVIQLGNMVQASELEDDEEFADLKEDIEEECNKFGKVVALEIPRPNGEEAVLGIGKVFVRFEDVSGAEAATKALTGRKFGGNIVDVSYMSLAKFETQDFA 547
BLAST of mRNA_M-pyrifera_M_contig77571.18254.1 vs. uniprot
Match: A0A7S3H7L4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H7L4_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 5.810e-12 Identity = 35/100 (35.00%), Postives = 62/100 (62.00%), Query Frame = 1 Query: 4 PTRVLRLSHMVTSKDLEDPDTVEDIEDDAREELKNFGSLKTVVIPTRGAG------MGQVFAHYEDKEAAQAAAKAVAGRKFDGRIIHAEFFDEDRFARQ 285 P+ V+R+S+M T +DL D D +++ +D E + G +K++VIP A +G++F H+ D A + +AVAGR+F+GR++ A F+ E+ F ++ Sbjct: 250 PSTVVRMSNMTTDEDLRDDDLFDELTEDVAGECNSHGVVKSIVIPRGPASGPQDTSVGKIFVHFTDIAGATRSRQAVAGRRFNGRVVEAYFYPEELFVKK 349
BLAST of mRNA_M-pyrifera_M_contig77571.18254.1 vs. uniprot
Match: A0A5A8CE56_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CE56_CAFRO) HSP 1 Score: 69.3 bits (168), Expect = 1.170e-11 Identity = 38/92 (41.30%), Postives = 56/92 (60.87%), Query Frame = 1 Query: 4 PTRVLRLSHMVTSKDLEDPDTVEDIEDDAREELKNFGSLKTVVIPTRGAGMGQVFAHYEDKEAAQAAAKAVAGRKFDGRIIHAEFFDEDRFA 279 PT VLR+++M++ +L +P VE+I +A G ++ VIPT G G VF + D AAQAAA+A+ G+ FDGR++ F E +FA Sbjct: 388 PTTVLRVANMLSPAELANPAEVEEIRREAMGACGAHGQVQAAVIPTSGPAAGVVFVKFADVRAAQAAAQALGGKTFDGRMLQTSFAPEAQFA 479
BLAST of mRNA_M-pyrifera_M_contig77571.18254.1 vs. uniprot
Match: A0A7S3GNQ6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GNQ6_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 1.190e-11 Identity = 42/101 (41.58%), Postives = 57/101 (56.44%), Query Frame = 1 Query: 4 PTRVLRLSHMVTSKDLEDPDTVEDIEDDAREELKNFGSLKTVVIPTRGAGMGQ-----VFAHYEDKEAAQAAAKAVAGRKFDGRIIHAEFFDEDRFARQDL 291 PTRVLRLS+MVT +DL + DI++D R E +G + +VV+P G +F +E E A AAAK + GRKF ++H +F E FA Q L Sbjct: 473 PTRVLRLSNMVTREDLYNEAEYVDIKEDVRLECLQYGKVLSVVMPRVKEGYSAAAECLIFVEFEAVEGAMAAAKVLNGRKFAENVVHVAYFSEKDFATQHL 573
BLAST of mRNA_M-pyrifera_M_contig77571.18254.1 vs. uniprot
Match: A0A2G5E9W4_AQUCA (Splicing factor U2af large subunit n=7 Tax=Thalictroideae TaxID=1463137 RepID=A0A2G5E9W4_AQUCA) HSP 1 Score: 68.6 bits (166), Expect = 2.220e-11 Identity = 38/101 (37.62%), Postives = 60/101 (59.41%), Query Frame = 1 Query: 4 PTRVLRLSHMVTSKDLEDPDTVEDIEDDAREELKNFGSLKTVVIPTRGA------GMGQVFAHYEDKEAAQAAAKAVAGRKFDGRIIHAEFFDEDRFARQD 288 PT+V+ L+ MV +L+ + EDI +D R E + +G L VVIP G+G+VF Y D + A A + + GRKFDG ++ A F+ ED+F++++ Sbjct: 457 PTKVVCLTQMVNIDELKVDEEYEDIVEDVRSEGEKYGELVNVVIPRPSINGELSPGVGKVFLEYSDTDGATKAKQGLNGRKFDGNLVVAVFYSEDKFSQRE 557 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77571.18254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig77571.18254.1 >prot_M-pyrifera_M_contig77571.18254.1 ID=prot_M-pyrifera_M_contig77571.18254.1|Name=mRNA_M-pyrifera_M_contig77571.18254.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp MVTSKDLEDPDTVEDIEDDAREELKNFGSLKTVVIPTRGAGMGQVFAHYEback to top mRNA from alignment at M-pyrifera_M_contig77571:342..638+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig77571.18254.1 ID=mRNA_M-pyrifera_M_contig77571.18254.1|Name=mRNA_M-pyrifera_M_contig77571.18254.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=297bp|location=Sequence derived from alignment at M-pyrifera_M_contig77571:342..638+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig77571:342..638+ >mRNA_M-pyrifera_M_contig77571.18254.1 ID=mRNA_M-pyrifera_M_contig77571.18254.1|Name=mRNA_M-pyrifera_M_contig77571.18254.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig77571:342..638+ (Macrocystis pyrifera P11B4 male)back to top |