prot_M-pyrifera_M_contig77571.18254.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig77571.18254.1
Unique Nameprot_M-pyrifera_M_contig77571.18254.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length89
Homology
BLAST of mRNA_M-pyrifera_M_contig77571.18254.1 vs. uniprot
Match: A0A835ZGN1_9STRA (Splicing factor U2AF subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGN1_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.460e-16
Identity = 44/89 (49.44%), Postives = 61/89 (68.54%), Query Frame = 0
Query:    1 MVTSKDLEDPDTVEDIEDDAREELKNFGSLKTVVIPTRG-AGMGQVFAHYEDKEAAQAAAKAVAGRKFDGRIIHAEFFDEDRFARQDLA 88
            MV  +DL+D     DI +D R+E K +G LKTV+IP  G  G+G+VF  Y + + AQAAA A+AGR+F  +I+ A++ DE RFA +DLA
Sbjct:  302 MVGEEDLKDDQEYTDILEDVRDECKQYGELKTVIIPRPGETGVGKVFLEYAEVQQAQAAAMALAGRQFASKIVKAQYHDESRFAARDLA 390          
BLAST of mRNA_M-pyrifera_M_contig77571.18254.1 vs. uniprot
Match: A0A8H4EKM5_GIGMA (U2 snRNP auxilliary factor, large subunit, splicing factor n=2 Tax=Gigaspora TaxID=4873 RepID=A0A8H4EKM5_GIGMA)

HSP 1 Score: 65.1 bits (157), Expect = 2.550e-10
Identity = 37/91 (40.66%), Postives = 54/91 (59.34%), Query Frame = 0
Query:    1 MVTSKDLEDPDTVEDIEDDAREELKNFGSLKTVVIPTRGA----GMGQVFAHYEDKEAAQAAAKAVAGRKFDGRIIHAEFFDEDRFARQDL 87
            MVT ++L D +  EDI DD REE   FG +  + IP  G+    G+G++F  +E  EAA AA +A+AGRKF  R +   + DE+ +  +D 
Sbjct:  578 MVTPEELVDDEEYEDIVDDVREECSKFGRVLDMKIPRPGSASLSGVGKIFVRFESIEAAGAALRALAGRKFAERTVLTSYIDEEVYDAEDF 668          
BLAST of mRNA_M-pyrifera_M_contig77571.18254.1 vs. uniprot
Match: A0A6G0WM79_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WM79_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 4.280e-10
Identity = 36/93 (38.71%), Postives = 50/93 (53.76%), Query Frame = 0
Query:    1 MVTSKDLEDPDTVEDIEDDAREELKNFGSLKTVVIPTRGA-----GMGQVFAHYEDKEAAQAAAKAVAGRKFDGRIIHAEFFDEDRFARQDLA 88
            MV + +LED D   D+++D  EE   FG +  + IP         G+G+VF  +ED   AQAA KA+ GRKF G I+   +    +F  QD A
Sbjct:  276 MVQASELEDDDEFADLKEDIEEECNKFGKVVALEIPRPNGNETVLGVGKVFVRFEDISGAQAAIKALKGRKFGGNIVEVSYMSLAKFETQDFA 368          
BLAST of mRNA_M-pyrifera_M_contig77571.18254.1 vs. uniprot
Match: A0A137PCH5_CONC2 (Splicing factor U2AF subunit n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137PCH5_CONC2)

HSP 1 Score: 63.5 bits (153), Expect = 8.750e-10
Identity = 35/92 (38.04%), Postives = 54/92 (58.70%), Query Frame = 0
Query:    1 MVTSKDLEDPDTVEDIEDDAREELKNFGSLKTVVIPT-----RGAGMGQVFAHYEDKEAAQAAAKAVAGRKFDGRIIHAEFFDEDRFARQDL 87
            MVT ++LED +  E+I  D  EE   FG + ++ IP        + +G+VF  Y++      A K++AGRKF  RI+ A +++ED+FA  DL
Sbjct:  445 MVTPEELEDDEEYEEILADIEEEATKFGKVLSIKIPKDKTKYNESAIGKVFIEYDNDTQCAVALKSLAGRKFSDRIVLASYYNEDKFANDDL 536          
BLAST of mRNA_M-pyrifera_M_contig77571.18254.1 vs. uniprot
Match: A0A4S2MPL6_9PEZI (Splicing factor U2AF subunit n=1 Tax=Ascodesmis nigricans TaxID=341454 RepID=A0A4S2MPL6_9PEZI)

HSP 1 Score: 63.2 bits (152), Expect = 1.200e-9
Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 0
Query:    1 MVTSKDLEDPDTVEDIEDDAREELKNFGSLKTVVIPTRGAG------MGQVFAHYEDKEAAQAAAKAVAGRKFDGRIIHAEFFDEDRF 82
            MVT ++L D +  E+I +D REE   +G L  + IP  G G      +G++F  +ED EAA AA KA+AGRKF  R +   +F E+ +
Sbjct:  457 MVTPEELMDNEEYEEICEDIREECSKYGKLVDMKIPRPGGGSKQVVGVGKIFVRFEDVEAANAALKALAGRKFADRTVVCTYFSEENY 544          
BLAST of mRNA_M-pyrifera_M_contig77571.18254.1 vs. uniprot
Match: A0A485KWN6_9STRA (Aste57867_12612 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KWN6_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 2.230e-9
Identity = 34/93 (36.56%), Postives = 50/93 (53.76%), Query Frame = 0
Query:    1 MVTSKDLEDPDTVEDIEDDAREELKNFGSLKTVVIPTRGA-----GMGQVFAHYEDKEAAQAAAKAVAGRKFDGRIIHAEFFDEDRFARQDLA 88
            MV + +LED +   D+++D  EE   FG +  + IP         G+G+VF  +ED   A+AA KA+ GRKF G I+   +    +F  QD A
Sbjct:  455 MVQASELEDDEEFADLKEDIEEECNKFGKVVALEIPRPNGEEAVLGIGKVFVRFEDVSGAEAATKALTGRKFGGNIVDVSYMSLAKFETQDFA 547          
BLAST of mRNA_M-pyrifera_M_contig77571.18254.1 vs. uniprot
Match: A0A7S3H7L4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H7L4_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 7.500e-9
Identity = 31/91 (34.07%), Postives = 54/91 (59.34%), Query Frame = 0
Query:    1 MVTSKDLEDPDTVEDIEDDAREELKNFGSLKTVVIPTRGAG------MGQVFAHYEDKEAAQAAAKAVAGRKFDGRIIHAEFFDEDRFARQ 85
            M T +DL D D  +++ +D   E  + G +K++VIP   A       +G++F H+ D   A  + +AVAGR+F+GR++ A F+ E+ F ++
Sbjct:  259 MTTDEDLRDDDLFDELTEDVAGECNSHGVVKSIVIPRGPASGPQDTSVGKIFVHFTDIAGATRSRQAVAGRRFNGRVVEAYFYPEELFVKK 349          
BLAST of mRNA_M-pyrifera_M_contig77571.18254.1 vs. uniprot
Match: A0A2G5E9W4_AQUCA (Splicing factor U2af large subunit n=7 Tax=Thalictroideae TaxID=1463137 RepID=A0A2G5E9W4_AQUCA)

HSP 1 Score: 60.5 bits (145), Expect = 1.070e-8
Identity = 34/92 (36.96%), Postives = 53/92 (57.61%), Query Frame = 0
Query:    1 MVTSKDLEDPDTVEDIEDDAREELKNFGSLKTVVIPTRGA------GMGQVFAHYEDKEAAQAAAKAVAGRKFDGRIIHAEFFDEDRFARQD 86
            MV   +L+  +  EDI +D R E + +G L  VVIP          G+G+VF  Y D + A  A + + GRKFDG ++ A F+ ED+F++++
Sbjct:  466 MVNIDELKVDEEYEDIVEDVRSEGEKYGELVNVVIPRPSINGELSPGVGKVFLEYSDTDGATKAKQGLNGRKFDGNLVVAVFYSEDKFSQRE 557          
BLAST of mRNA_M-pyrifera_M_contig77571.18254.1 vs. uniprot
Match: A0A835I7M6_9MAGN (Splicing factor U2af large subunit n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835I7M6_9MAGN)

HSP 1 Score: 60.1 bits (144), Expect = 1.450e-8
Identity = 33/92 (35.87%), Postives = 53/92 (57.61%), Query Frame = 0
Query:    1 MVTSKDLEDPDTVEDIEDDAREELKNFGSLKTVVIPTRGA------GMGQVFAHYEDKEAAQAAAKAVAGRKFDGRIIHAEFFDEDRFARQD 86
            MV   +L+  +  +DI +D R E + +G L +V+IP  G       G+G+VF  Y D + A  A + + GRKFDG ++ A ++ ED+F+  D
Sbjct:  465 MVNVDELKVDEEYDDIMEDVRTEGEKYGDLVSVIIPRPGPNGELSPGVGKVFLEYSDTDGAAKARQGLNGRKFDGNVVVAVYYPEDKFSEGD 556          
BLAST of mRNA_M-pyrifera_M_contig77571.18254.1 vs. uniprot
Match: A0A5A8CE56_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CE56_CAFRO)

HSP 1 Score: 58.9 bits (141), Expect = 3.670e-8
Identity = 33/83 (39.76%), Postives = 48/83 (57.83%), Query Frame = 0
Query:    1 MVTSKDLEDPDTVEDIEDDAREELKNFGSLKTVVIPTRGAGMGQVFAHYEDKEAAQAAAKAVAGRKFDGRIIHAEFFDEDRFA 83
            M++  +L +P  VE+I  +A       G ++  VIPT G   G VF  + D  AAQAAA+A+ G+ FDGR++   F  E +FA
Sbjct:  397 MLSPAELANPAEVEEIRREAMGACGAHGQVQAAVIPTSGPAAGVVFVKFADVRAAQAAAQALGGKTFDGRMLQTSFAPEAQFA 479          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77571.18254.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZGN1_9STRA1.460e-1649.44Splicing factor U2AF subunit n=1 Tax=Tribonema min... [more]
A0A8H4EKM5_GIGMA2.550e-1040.66U2 snRNP auxilliary factor, large subunit, splicin... [more]
A0A6G0WM79_9STRA4.280e-1038.71Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A137PCH5_CONC28.750e-1038.04Splicing factor U2AF subunit n=1 Tax=Conidiobolus ... [more]
A0A4S2MPL6_9PEZI1.200e-940.91Splicing factor U2AF subunit n=1 Tax=Ascodesmis ni... [more]
A0A485KWN6_9STRA2.230e-936.56Aste57867_12612 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S3H7L4_9STRA7.500e-934.07Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A2G5E9W4_AQUCA1.070e-836.96Splicing factor U2af large subunit n=7 Tax=Thalict... [more]
A0A835I7M6_9MAGN1.450e-835.87Splicing factor U2af large subunit n=1 Tax=Coptis ... [more]
A0A5A8CE56_CAFRO3.670e-839.76Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..87
e-value: 4.5E-23
score: 83.2
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 18..73
e-value: 3.3E-7
score: 30.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 1..79
score: 9.814
NoneNo IPR availablePANTHERPTHR23139RNA-BINDING PROTEINcoord: 1..84
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 9..81

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77571contigM-pyrifera_M_contig77571:372..638 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77571.18254.1mRNA_M-pyrifera_M_contig77571.18254.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig77571 342..638 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig77571.18254.1 ID=prot_M-pyrifera_M_contig77571.18254.1|Name=mRNA_M-pyrifera_M_contig77571.18254.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp
MVTSKDLEDPDTVEDIEDDAREELKNFGSLKTVVIPTRGAGMGQVFAHYE
DKEAAQAAAKAVAGRKFDGRIIHAEFFDEDRFARQDLA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
IPR035979RBD_domain_sf