mRNA_M-pyrifera_M_contig77525.18247.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77525.18247.1
Unique NamemRNA_M-pyrifera_M_contig77525.18247.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig77525.18247.1 vs. uniprot
Match: A0A7K1Z8Z6_9ACTN (Cupin domain-containing protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1Z8Z6_9ACTN)

HSP 1 Score: 187 bits (476), Expect = 4.130e-59
Identity = 90/124 (72.58%), Postives = 101/124 (81.45%), Query Frame = 1 
Query:    7 ESGPIFRHLSKLDWETKADQKAEVAALAAQADDVGARRSRLTTGEFGFHSHISEMPPGFEVPPHTHNISEHMTILEGSINVSDGTVLETGDTVVIPGGHLYGFTVGDAGVRFLVVRGADAATDF 378
            E GPIFRHL +L WET ADQKAEVAALAAQAD +GARRSRLT GE GFHSHISEMPPGF VPPHTH+I+E M ILEGS+ V++G VL  GDT VIP GH+YGFT G+ GVRF V R  +AAT+ 
Sbjct:   14 EQGPIFRHLDRLKWETAADQKAEVAALAAQADALGARRSRLTAGEHGFHSHISEMPPGFVVPPHTHDINEIMLILEGSVEVTNGVVLNAGDTAVIPAGHMYGFTAGEQGVRFFVARTGEAATNI 137
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BLAST of mRNA_M-pyrifera_M_contig77525.18247.1 vs. uniprot
Match: A0A7Y2GK09_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2GK09_9ACTN)

HSP 1 Score: 112 bits (280), Expect = 1.800e-29
Identity = 56/120 (46.67%), Postives = 72/120 (60.00%), Query Frame = 1 
Query:   22 FRHLSKLDWETKADQKAEVAALAAQADDVGARRSRLTTGEFGFHSHISEMPPGFEVPPHTHNISEHMTILEGSINVSDGTVLETGDTVVIPGGHLYGFTVGDAGVRFLVVRGADAATDFN 381
            +  L++L WE   D   EVA LAA+A    ARR+++TTG  GFHS ISE+P GFE+PPH+H   E M +L G   V  G  L  GD   IPGG  YG T G  G+RF+V+R   + T  +
Sbjct:    6 YYKLAELPWEDPEDAPPEVAELAAKAVGTTARRAQVTTGAIGFHSQISELPAGFEIPPHSHTAPELMVVLAGGGQVVGGPALNAGDVAEIPGGSEYGLTAGPDGIRFMVIRPEASTTHIS 125
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BLAST of mRNA_M-pyrifera_M_contig77525.18247.1 vs. uniprot
Match: A0A6N8YND3_9CHLR (Cupin domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6N8YND3_9CHLR)

HSP 1 Score: 52.8 bits (125), Expect = 3.540e-6
Identity = 33/83 (39.76%), Postives = 45/83 (54.22%), Query Frame = 1 
Query:  136 GEFGFHSHISEMPPGFEVPPHTHNISEHMTILEGSINVS-DGTVLETG--DTVVIPGGHLYGF-TVGDAGVRFLVVRGADAAT 372
            G   F + IS  PPG +VP H+HN+ E +T+LEGS     DG V   G  DT  IPGG  + F   GD  ++ + V  + + T
Sbjct:   26 GTDAFTAGISHFPPGLQVPMHSHNVEEMVTVLEGSGECEIDGVVRPVGLFDTTFIPGGVTHCFRNTGDVPMKIMWVYASTSVT 108
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77525.18247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7K1Z8Z6_9ACTN4.130e-5972.58Cupin domain-containing protein n=2 Tax=Acidimicro... [more]
A0A7Y2GK09_9ACTN1.800e-2946.67Uncharacterized protein n=1 Tax=Acidimicrobiales b... [more]
A0A6N8YND3_9CHLR3.540e-639.76Cupin domain-containing protein n=1 Tax=Chloroflex... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77525contigM-pyrifera_M_contig77525:509..898 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size390
Cds size390
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816676.0695968-CDS-M-pyrifera_M_contig77525:508..8981622816676.0695968-CDS-M-pyrifera_M_contig77525:508..898Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77525 509..898 -
1692278113.1069372-CDS-M-pyrifera_M_contig77525:508..8981692278113.1069372-CDS-M-pyrifera_M_contig77525:508..898Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77525 509..898 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77525.18247.1prot_M-pyrifera_M_contig77525.18247.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77525 509..898 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77525.18247.1

>prot_M-pyrifera_M_contig77525.18247.1 ID=prot_M-pyrifera_M_contig77525.18247.1|Name=mRNA_M-pyrifera_M_contig77525.18247.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=130bp
MHESGPIFRHLSKLDWETKADQKAEVAALAAQADDVGARRSRLTTGEFGF
HSHISEMPPGFEVPPHTHNISEHMTILEGSINVSDGTVLETGDTVVIPGG
HLYGFTVGDAGVRFLVVRGADAATDFNAK*
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mRNA from alignment at M-pyrifera_M_contig77525:509..898-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77525.18247.1 ID=mRNA_M-pyrifera_M_contig77525.18247.1|Name=mRNA_M-pyrifera_M_contig77525.18247.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig77525:509..898- (Macrocystis pyrifera P11B4 male)
ATGCACGAATCGGGACCCATCTTTCGCCATCTCTCGAAGCTCGACTGGGA
GACCAAGGCCGACCAGAAGGCCGAGGTCGCGGCGCTCGCCGCCCAGGCCG
ACGACGTCGGGGCCCGCCGCAGCCGGCTCACCACCGGCGAGTTCGGCTTC
CACTCCCACATCTCCGAGATGCCGCCCGGCTTCGAGGTGCCGCCGCACAC
GCACAACATCAGCGAACACATGACCATCCTCGAGGGCAGCATCAACGTGA
GCGACGGCACCGTGCTCGAAACCGGCGACACCGTCGTCATCCCCGGTGGC
CATCTCTACGGCTTCACCGTCGGCGACGCCGGTGTGCGCTTCCTCGTCGT
GCGCGGGGCCGACGCCGCCACCGACTTCAACGCCAAGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77525:509..898-

>mRNA_M-pyrifera_M_contig77525.18247.1 ID=mRNA_M-pyrifera_M_contig77525.18247.1|Name=mRNA_M-pyrifera_M_contig77525.18247.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=780bp|location=Sequence derived from alignment at M-pyrifera_M_contig77525:509..898- (Macrocystis pyrifera P11B4 male)
ATGCACGAATCGGGACCCATCTTTCGCCATCTCTCGAAGCTCGACTGGGA
GACCAAGGCCGACCAGAAGGCCGAGGTCGCGGCGCTCGCCGCCCAGGCCG
ACGACGTCGGGGCCCGCCGCAGCCGGCTCACCACCGGCGAGTTCGGCTTC
CACTCCCACATCTCCGAGATGCCGCCCGGCTTCGAGGTGCCGCCGCACAC
GCACAACATCAGCGAACACATGACCATCCTCGAGGGCAGCATCAACGTGA
GCGACGGCACCGTGCTCGAAACCGGCGACACCGTCGTCATCCCCGGTGGC
CATCTCTACGGCTTCACCGTCGGCGACGCCGGTGTGCGCTTCCTCGTCGT
GCGCGGGGCCGACGCCGCCACCGACTTCAACGCCAAGTAGATGCACGAAT
CGGGACCCATCTTTCGCCATCTCTCGAAGCTCGACTGGGAGACCAAGGCC
GACCAGAAGGCCGAGGTCGCGGCGCTCGCCGCCCAGGCCGACGACGTCGG
GGCCCGCCGCAGCCGGCTCACCACCGGCGAGTTCGGCTTCCACTCCCACA
TCTCCGAGATGCCGCCCGGCTTCGAGGTGCCGCCGCACACGCACAACATC
AGCGAACACATGACCATCCTCGAGGGCAGCATCAACGTGAGCGACGGCAC
CGTGCTCGAAACCGGCGACACCGTCGTCATCCCCGGTGGCCATCTCTACG
GCTTCACCGTCGGCGACGCCGGTGTGCGCTTCCTCGTCGTGCGCGGGGCC
GACGCCGCCACCGACTTCAACGCCAAGTAG
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