mRNA_M-pyrifera_M_contig77464.18236.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77464.18236.1
Unique NamemRNA_M-pyrifera_M_contig77464.18236.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig77464.18236.1 vs. uniprot
Match: A0A1H6FF12_9GAMM (Serine/threonine-protein kinase D n=1 Tax=Thiotrichales bacterium HS_08 TaxID=1899563 RepID=A0A1H6FF12_9GAMM)

HSP 1 Score: 55.5 bits (132), Expect = 1.220e-6
Identity = 30/76 (39.47%), Postives = 43/76 (56.58%), Query Frame = 1 
Query:    7 RLGHSRVALCLLKNIAANGDVNTQFMMADIYSRSLPELFPRSDITPSMAREWAHSAASSGHAKAQNLLGALYEQGD 234
            R G+ +VAL  L+ +AA+G +  QF +A++Y +  P L   +      A  W H AA   HAKAQN L  +YE G+
Sbjct:  381 RSGNHQVALDKLRQLAADGYIEAQFTLANLYDQGAPGLAEDNR----QAVHWYHEAAEQDHAKAQNNLAVMYEHGE 452
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77464.18236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1H6FF12_9GAMM1.220e-639.47Serine/threonine-protein kinase D n=1 Tax=Thiotric... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77464contigM-pyrifera_M_contig77464:308..631 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816675.4595423-CDS-M-pyrifera_M_contig77464:307..6311622816675.4595423-CDS-M-pyrifera_M_contig77464:307..631Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77464 308..631 +
1692278112.7629182-CDS-M-pyrifera_M_contig77464:307..6311692278112.7629182-CDS-M-pyrifera_M_contig77464:307..631Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77464 308..631 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77464.18236.1prot_M-pyrifera_M_contig77464.18236.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77464 308..631 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77464.18236.1

>prot_M-pyrifera_M_contig77464.18236.1 ID=prot_M-pyrifera_M_contig77464.18236.1|Name=mRNA_M-pyrifera_M_contig77464.18236.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
LLRLGHSRVALCLLKNIAANGDVNTQFMMADIYSRSLPELFPRSDITPSM
AREWAHSAASSGHAKAQNLLGALYEQGDSFVSKKPEPQRALEWYGKAEAQ
GYAVARAN
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mRNA from alignment at M-pyrifera_M_contig77464:308..631+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77464.18236.1 ID=mRNA_M-pyrifera_M_contig77464.18236.1|Name=mRNA_M-pyrifera_M_contig77464.18236.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig77464:308..631+ (Macrocystis pyrifera P11B4 male)
CTCCTCCGGCTGGGCCACTCTCGCGTGGCCCTCTGCCTCCTGAAGAACAT
TGCCGCCAATGGAGACGTCAACACACAGTTCATGATGGCAGACATCTACT
CCAGGTCGCTGCCGGAGCTCTTCCCTCGCTCGGACATCACTCCCTCCATG
GCGAGGGAATGGGCCCACTCGGCGGCGAGCAGCGGCCATGCCAAGGCGCA
GAACCTCCTTGGCGCTCTCTACGAACAAGGAGACTCCTTCGTGAGCAAGA
AACCAGAGCCCCAGCGTGCGCTGGAGTGGTATGGGAAGGCAGAGGCGCAG
GGCTACGCCGTAGCACGGGCCAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77464:308..631+

>mRNA_M-pyrifera_M_contig77464.18236.1 ID=mRNA_M-pyrifera_M_contig77464.18236.1|Name=mRNA_M-pyrifera_M_contig77464.18236.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig77464:308..631+ (Macrocystis pyrifera P11B4 male)
CTCCTCCGGCTGGGCCACTCTCGCGTGGCCCTCTGCCTCCTGAAGAACAT
TGCCGCCAATGGAGACGTCAACACACAGTTCATGATGGCAGACATCTACT
CCAGGTCGCTGCCGGAGCTCTTCCCTCGCTCGGACATCACTCCCTCCATG
GCGAGGGAATGGGCCCACTCGGCGGCGAGCAGCGGCCATGCCAAGGCGCA
GAACCTCCTTGGCGCTCTCTACGAACAAGGAGACTCCTTCGTGAGCAAGA
AACCAGAGCCCCAGCGTGCGCTGGAGTGGTATGGGAAGGCAGAGGCGCAG
GGCTACGCCGTAGCACGGGCCAACCTCCTCCGGCTGGGCCACTCTCGCGT
GGCCCTCTGCCTCCTGAAGAACATTGCCGCCAATGGAGACGTCAACACAC
AGTTCATGATGGCAGACATCTACTCCAGGTCGCTGCCGGAGCTCTTCCCT
CGCTCGGACATCACTCCCTCCATGGCGAGGGAATGGGCCCACTCGGCGGC
GAGCAGCGGCCATGCCAAGGCGCAGAACCTCCTTGGCGCTCTCTACGAAC
AAGGAGACTCCTTCGTGAGCAAGAAACCAGAGCCCCAGCGTGCGCTGGAG
TGGTATGGGAAGGCAGAGGCGCAGGGCTACGCCGTAGCACGGGCCAAC
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