mRNA_M-pyrifera_M_contig77414.18226.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77414.18226.1
Unique NamemRNA_M-pyrifera_M_contig77414.18226.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig77414.18226.1 vs. uniprot
Match: A0A0J1B3N3_RHOIS (Organization of plasma membrane n=1 Tax=Rhodopirellula islandica TaxID=595434 RepID=A0A0J1B3N3_RHOIS)

HSP 1 Score: 71.6 bits (174), Expect = 7.280e-13
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 3 
Query:  123 MLRPIRHRFVPANCRAHGAQRRRSRMLTVFGLAPL 227
            MLRPIRHRFVPANCRAHGAQRRRSRML +FGLAPL
Sbjct:    1 MLRPIRHRFVPANCRAHGAQRRRSRMLAMFGLAPL 35
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BLAST of mRNA_M-pyrifera_M_contig77414.18226.1 vs. uniprot
Match: Q7UXH0_RHOBA (Uncharacterized protein n=1 Tax=Rhodopirellula baltica (strain DSM 10527 / NCIMB 13988 / SH1) TaxID=243090 RepID=Q7UXH0_RHOBA)

HSP 1 Score: 65.9 bits (159), Expect = 2.260e-12
Identity = 31/46 (67.39%), Postives = 33/46 (71.74%), Query Frame = -3 
Query:   68 VSIRERRRCAP*ARQFAGTNRWRMGRNI*LDQQRDDVRHPCHRAVP 205
            +SIR+RRRC P ARQ A    WR GRNI LDQQRDDVRH  HR  P
Sbjct:    1 MSIRDRRRCRPRARQLAEATEWRWGRNIGLDQQRDDVRHTGHRVFP 46
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BLAST of mRNA_M-pyrifera_M_contig77414.18226.1 vs. uniprot
Match: F2B177_RHOBT (Uncharacterized protein n=2 Tax=Rhodopirellula baltica TaxID=265606 RepID=F2B177_RHOBT)

HSP 1 Score: 62.8 bits (151), Expect = 1.910e-11
Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   67 EGPPDDKGVEHHPAVDRVICCVPSAIGLSPRIAVLTVRSDGVPGCS 204
            +G PDD+ VEHHPAVDRV+CCVP+AI L   +AV  V SDG  GCS
Sbjct:   23 QGRPDDQCVEHHPAVDRVLCCVPTAIQLPLPVAVPAVGSDGDLGCS 68
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77414.18226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0J1B3N3_RHOIS7.280e-1394.29Organization of plasma membrane n=1 Tax=Rhodopirel... [more]
Q7UXH0_RHOBA2.260e-1267.39Uncharacterized protein n=1 Tax=Rhodopirellula bal... [more]
F2B177_RHOBT1.910e-1165.22Uncharacterized protein n=2 Tax=Rhodopirellula bal... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77414contigM-pyrifera_M_contig77414:118..345 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size229
Cds size228
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816675.048345-CDS-M-pyrifera_M_contig77414:117..3451622816675.048345-CDS-M-pyrifera_M_contig77414:117..345Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77414 118..345 +
1692278112.5781054-CDS-M-pyrifera_M_contig77414:117..3451692278112.5781054-CDS-M-pyrifera_M_contig77414:117..345Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77414 118..345 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77414.18226.1prot_M-pyrifera_M_contig77414.18226.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77414 118..345 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77414.18226.1

>prot_M-pyrifera_M_contig77414.18226.1 ID=prot_M-pyrifera_M_contig77414.18226.1|Name=mRNA_M-pyrifera_M_contig77414.18226.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=76bp
CRLSHRCNCCDSIGRQNHHNRTEGPPDDKGVEHHPAVDRVICCVPSAIGL
SPRIAVLTVRSDGVPGCSPCLGWPR*
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mRNA from alignment at M-pyrifera_M_contig77414:118..345+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77414.18226.1 ID=mRNA_M-pyrifera_M_contig77414.18226.1|Name=mRNA_M-pyrifera_M_contig77414.18226.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig77414:118..345+ (Macrocystis pyrifera P11B4 male)
TGCCGCTTGTCCCACCGCTGCAACTGTTGTGATTCGATCGGAAGGCAAAA
TCATCACAACCGGACCGAGGGACCGCCCGATGACAAGGGTGTCGAACATC
ATCCCGCTGTTGATCGAGTCATATGTTGCGTCCCATCCGCCATCGGTTTG
TCCCCGCGAATTGCCGTGCTCACGGTGCGCAGCGACGGCGTTCCCGGATG
CTCACCGTGTTTGGGTTGGCCCCGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77414:118..345+

>mRNA_M-pyrifera_M_contig77414.18226.1 ID=mRNA_M-pyrifera_M_contig77414.18226.1|Name=mRNA_M-pyrifera_M_contig77414.18226.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig77414:118..345+ (Macrocystis pyrifera P11B4 male)
TGCCGCTTGTCCCACCGCTGCAACTGTTGTGATTCGATCGGAAGGCAAAA
TCATCACAACCGGACCGAGGGACCGCCCGATGACAAGGGTGTCGAACATC
ATCCCGCTGTTGATCGAGTCATATGTTGCGTCCCATCCGCCATCGGTTTG
TCCCCGCGAATTGCCGTGCTCACGGTGCGCAGCGACGGCGTTCCCGGATG
CTCACCGTGTTTGGGTTGGCCCCGCTGATGCCGCTTGTCCCACCGCTGCA
ACTGTTGTGATTCGATCGGAAGGCAAAATCATCACAACCGGACCGAGGGA
CCGCCCGATGACAAGGGTGTCGAACATCATCCCGCTGTTGATCGAGTCAT
ATGTTGCGTCCCATCCGCCATCGGTTTGTCCCCGCGAATTGCCGTGCTCA
CGGTGCGCAGCGACGGCGTTCCCGGATGCTCACCGTGTTTGGGTTGGCCC
CGCTGA
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