mRNA_M-pyrifera_M_contig7741.18224.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7741.18224.1
Unique NamemRNA_M-pyrifera_M_contig7741.18224.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig7741.18224.1 vs. uniprot
Match: D7FQB5_ECTSI (SAM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQB5_ECTSI)

HSP 1 Score: 339 bits (869), Expect = 1.900e-114
Identity = 176/273 (64.47%), Postives = 206/273 (75.46%), Query Frame = 1
Query:    1 PSSWSASKLSSWLSQDQKIDPEAIDALALCDVNGRMFLEMDEEDLAESDELGLDMQNIHAFLRLQAQLEALELSRNGETPPAPGASVLPT----------------------------KPPPVTAASAVVGASAEGAGACRRSSTCSETWSLPCISVDADGNSYFSDKTVALGTGT-GSGIGALSELIPSAGVKFRETPGDYDFDFHTAPAKQFIVSLDAGVDIEVTDGTRRIFPAGTVMFVEDTWGKGHRSRAVNGKRRRSLFVIVPEDFSL 732
            PSSWSAS+LS+WL +D+K++PEAIDALALCDV+GRMFLEMDEEDLAESDELGLDM++IHAFL+LQA LEALELS +GE PP PG+SVLP                             +PP      + VG    G G        S +WSLPC+SVDA+GNS+F D+ VALG GT GSGIGALSELIP+ G+KFRETPGDYDFDFH APA+Q +VSLD GVDIEVTDGTRR+FPAGTVM  EDTWGKGHRSRAV+GK R+SLF+++P+DF L
Sbjct:    8 PSSWSASRLSAWLGEDEKLNPEAIDALALCDVDGRMFLEMDEEDLAESDELGLDMKSIHAFLKLQADLEALELSHHGERPPLPGSSVLPFNTANPQPRPXXXXXXXXXXXXETAGSSGEPPCTLGGESSVGGCGSGGG--------SRSWSLPCVSVDAEGNSFFCDRKVALGAGTTGSGIGALSELIPTTGLKFRETPGDYDFDFHCAPARQLVVSLDEGVDIEVTDGTRRVFPAGTVMLAEDTWGKGHRSRAVDGKSRKSLFLVLPDDFKL 272          
BLAST of mRNA_M-pyrifera_M_contig7741.18224.1 vs. uniprot
Match: A0A7S4C942_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4C942_9EUGL)

HSP 1 Score: 132 bits (333), Expect = 1.640e-35
Identity = 62/108 (57.41%), Postives = 80/108 (74.07%), Query Frame = 1
Query:  364 WSLPCISVDADGNSYFSDKTVALG-TGTGSGIGALSELIPSAGVKFRETPGDYDFDFHTAPAKQFIVSLDAGVDIEVTDGTRRIFPAGTVMFVEDTWGKGHRSRAVNG 684
            W +P ++VD  G SY+S  T+ LG +G  + IGALSE++    ++ RETPGDY FD+H AP KQFIV+LD  VD+EV+DGTR++  AG + FVEDTWG GH SRAVNG
Sbjct:   14 WVIPVVAVDEAGKSYWSSMTIPLGASGGANSIGALSEVMKVTTMQIRETPGDYKFDWHCAPRKQFIVNLDGAVDVEVSDGTRKVVSAGEMFFVEDTWGTGHLSRAVNG 121          
BLAST of mRNA_M-pyrifera_M_contig7741.18224.1 vs. uniprot
Match: A0A7S1NNL2_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NNL2_9EUGL)

HSP 1 Score: 124 bits (311), Expect = 2.230e-32
Identity = 57/109 (52.29%), Postives = 83/109 (76.15%), Query Frame = 1
Query:  397 GNSYFSDKTVALGTGTG-SGIGALSELIPSAGVKFRETPGDYDFDFHTAPAKQFIVSLDAGVDIEVTDGTRRIFPAGTVMFVEDTWGKGHRSRAVNGKRRRSLFVIVPE 720
            G+SYF+ K++ LG   G + IG+LS  +P  G+  R+TP DYDFD+H AP KQF+V+LDA V+IEV+DG++++  AG +  +EDT G+GHRS++VNG+ RRSLF+ V +
Sbjct:    1 GHSYFTTKSIPLGPSHGPNSIGSLSAAMPVTGLVVRDTPADYDFDWHVAPRKQFVVNLDAAVEIEVSDGSKKVLGAGEMFLLEDTEGQGHRSKSVNGQPRRSLFITVAD 109          
BLAST of mRNA_M-pyrifera_M_contig7741.18224.1 vs. uniprot
Match: A0A7S4P8W1_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4P8W1_9EUKA)

HSP 1 Score: 120 bits (302), Expect = 1.160e-30
Identity = 60/123 (48.78%), Postives = 83/123 (67.48%), Query Frame = 1
Query:  358 ETWSLPCISVDADGNSYFSDKTVALGTGTGSGIGALSELIPSA-GVKFRETPGDYDFDFHTAPAKQFIVSLDAGVDIEVTDGTRRIFPAGTVMFVEDTWGKGHRSRAVNGKRRRSLFVIVPED 723
            +T  +  I++  +G S F    + L +  G+ IG LS L+P+  G+ FRETPGDY+F +H AP KQFI++LDA V +EVTDGT+++  AG V FVED  G GH S +V GK RRS+F+ V +D
Sbjct:    6 KTMKITTITMTKEGGSQFGTMIIPLSSPEGA-IGTLSPLLPTKNGIFFRETPGDYNFSWHCAPRKQFIINLDAAVQVEVTDGTKKVLEAGEVFFVEDIEGTGHYSSSVGGKTRRSVFIPVDDD 127          
BLAST of mRNA_M-pyrifera_M_contig7741.18224.1 vs. uniprot
Match: A0A835Z6U7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6U7_9STRA)

HSP 1 Score: 123 bits (308), Expect = 2.230e-30
Identity = 55/73 (75.34%), Postives = 61/73 (83.56%), Query Frame = 1
Query:  505 TPGDYDFDFHTAPAKQFIVSLDAGVDIEVTDGTRRIFPAGTVMFVEDTWGKGHRSRAVNGKRRRSLFVIVPED 723
            TPGDYDFDFH AP +QFIVSLDAGVDIE + G RR FPAGTVMFVEDTWG+GHRSRAV G  R  +F+ VP+D
Sbjct:  162 TPGDYDFDFHVAPRRQFIVSLDAGVDIETSSGERRAFPAGTVMFVEDTWGRGHRSRAVGGAARHCVFIGVPDD 234          
BLAST of mRNA_M-pyrifera_M_contig7741.18224.1 vs. uniprot
Match: UPI00096B5534 (uncharacterized protein LOC109581817 n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=UPI00096B5534)

HSP 1 Score: 119 bits (299), Expect = 3.330e-30
Identity = 58/113 (51.33%), Postives = 80/113 (70.80%), Query Frame = 1
Query:  394 DGNSYFSDKTVALGTGTGSGIGALSELIPSAGVKFRETPGDYDFDFHTAPAKQFIVSLDAGVDIEVTDGTRRIFPAGTVMFVEDTWGKGHRSRAVNGKRRRSLFVIVPEDFSL 732
            DG S+F    + +  G G  IG++S++IPS G+ FRETP  Y++ +HTAP +QFIV+LDA V + V+ G +RI   G V FVEDT GKGH S +V+GK RRS+F+ VP+D+ L
Sbjct:   25 DGESHFGTVKIKM-KGKGD-IGSISDIIPSTGLMFRETPSSYNYSWHTAPRRQFIVNLDASVQVTVSSGEKRILKEGEVFFVEDTTGKGHFSESVDGKVRRSVFLPVPDDYKL 135          
BLAST of mRNA_M-pyrifera_M_contig7741.18224.1 vs. uniprot
Match: A0A7C8CI49_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7C8CI49_9DELT)

HSP 1 Score: 116 bits (290), Expect = 3.710e-29
Identity = 58/112 (51.79%), Postives = 79/112 (70.54%), Query Frame = 1
Query:  379 ISVDADGNSYFSDKTVALGTGTGSGIGALSELIPSAGVKFRETPGDYDFDFHTAPAKQFIVSLDAGVDIEVTDGTRRIFPAGTVMFVEDTWGKGHRSRAVNGKRRRSLFVIV 714
            I    D  S+F D  + L  G G+ IG++S L  + G+ FRET GDYDF FH AP +Q++++L+AGV+IEV DGTRR+  AG V+  EDT G+GH SRAV+G+ RRS+FV +
Sbjct:    6 IYTGEDNESHFEDLEIPL-KGFGA-IGSISSLEGATGIAFRETEGDYDFGFHNAPRRQYVINLNAGVEIEVGDGTRRLLGAGEVLLAEDTTGRGHISRAVDGRPRRSIFVTL 115          
BLAST of mRNA_M-pyrifera_M_contig7741.18224.1 vs. uniprot
Match: A0A2V7EX67_9BACT (Uncharacterized protein n=5 Tax=unclassified Candidatus Rokubacteria TaxID=2760815 RepID=A0A2V7EX67_9BACT)

HSP 1 Score: 114 bits (284), Expect = 2.900e-28
Identity = 57/110 (51.82%), Postives = 73/110 (66.36%), Query Frame = 1
Query:  385 VDADGNSYFSDKTVALGTGTGSGIGALSELIPSAGVKFRETPGDYDFDFHTAPAKQFIVSLDAGVDIEVTDGTRRIFPAGTVMFVEDTWGKGHRSRAVNGKRRRSLFVIV 714
            VD +G S+F D  V L   T +G   LS  +P+ G+ FRE   DYD D+H AP +Q+IV+LDAGV I  +DG  R   AG V+ VEDTWGKGHRS+A++GK R  +FV V
Sbjct:    8 VDKNGESHFEDMEVPLTESTRAG--RLSARLPATGIIFREVSADYDLDWHPAPRRQYIVNLDAGVQITASDGETRRIGAGEVLLVEDTWGKGHRSKALDGKPRHCIFVPV 115          
BLAST of mRNA_M-pyrifera_M_contig7741.18224.1 vs. uniprot
Match: A0A3M1PS35_9BACT (Uncharacterized protein n=1 Tax=Calditrichaeota bacterium TaxID=2212469 RepID=A0A3M1PS35_9BACT)

HSP 1 Score: 114 bits (284), Expect = 2.980e-28
Identity = 53/112 (47.32%), Postives = 76/112 (67.86%), Query Frame = 1
Query:  379 ISVDADGNSYFSDKTVALGTGTGSGIGALSELIPSAGVKFRETPGDYDFDFHTAPAKQFIVSLDAGVDIEVTDGTRRIFPAGTVMFVEDTWGKGHRSRAVNGKRRRSLFVIV 714
            I  DA G+S+F D  + L       IG LSE +P+AG+ FRE   DYD+D+H AP +Q+I+ LD  ++I+V+DG +R F  G V+ VEDT G+GH++R  NG+ RRS+FV +
Sbjct:    6 IFADASGDSHFEDVEIPLRDA--GAIGRLSECLPAAGIIFRENDPDYDYDWHNAPTRQYIILLDGEIEIQVSDGEKRTFCGGDVLLVEDTHGRGHKTRVTNGQPRRSIFVTL 115          
BLAST of mRNA_M-pyrifera_M_contig7741.18224.1 vs. uniprot
Match: A0A814EIU2_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A814EIU2_9BILA)

HSP 1 Score: 114 bits (285), Expect = 3.790e-28
Identity = 56/112 (50.00%), Postives = 75/112 (66.96%), Query Frame = 1
Query:  388 DADGNSYFSDKTVALGTGTGSGIGALSELIPSAGVKFRETPGDYDFDFHTAPAKQFIVSLDAGVDIEVTDGTRRIFPAGTVMFVEDTWGKGHRSRAVNGKRRRSLFVIVPED 723
            D  G S+F + T  L       IG +SE I S  + FR TPGDY+FD H AP +QFI++LDA V + V+DG  RI P G+++FVEDT GKGH S+AV+ K R S+F+ VP++
Sbjct:   12 DDKGESHFDEVTAPLNDQ--GVIGFISEAIGSTNIFFRYTPGDYNFDLHNAPRRQFIINLDASVKVTVSDGESRILPPGSILFVEDTNGKGHISQAVDSKPRNSIFIAVPDN 121          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7741.18224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQB5_ECTSI1.900e-11464.47SAM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S4C942_9EUGL1.640e-3557.41Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7S1NNL2_9EUGL2.230e-3252.29Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S4P8W1_9EUKA1.160e-3048.78Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
A0A835Z6U7_9STRA2.230e-3075.34Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI00096B55343.330e-3051.33uncharacterized protein LOC109581817 n=1 Tax=Amphi... [more]
A0A7C8CI49_9DELT3.710e-2951.79Uncharacterized protein n=1 Tax=Myxococcales bacte... [more]
A0A2V7EX67_9BACT2.900e-2851.82Uncharacterized protein n=5 Tax=unclassified Candi... [more]
A0A3M1PS35_9BACT2.980e-2847.32Uncharacterized protein n=1 Tax=Calditrichaeota ba... [more]
A0A814EIU2_9BILA3.790e-2850.00Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7741contigM-pyrifera_M_contig7741:4527..8581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.0
Seed ortholog evalue8.5e-23
Seed eggNOG ortholog227086.JGI_V11_71403
Hectar predicted targeting categoryother localisation
EggNOG OGs2DZCW@1,2S6XB@2759
Ec32 ortholog descriptionSterile alpha motif, type 2
Ec32 orthologEc-01_006730.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size830
Cds size630
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816674.8946998-UTR-M-pyrifera_M_contig7741:4526..46211622816674.8946998-UTR-M-pyrifera_M_contig7741:4526..4621Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7741 4527..4621 -
1692278112.4749486-UTR-M-pyrifera_M_contig7741:4526..46211692278112.4749486-UTR-M-pyrifera_M_contig7741:4526..4621Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7741 4527..4621 -
1622816674.96379-UTR-M-pyrifera_M_contig7741:7865..79041622816674.96379-UTR-M-pyrifera_M_contig7741:7865..7904Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7741 7866..7904 -
1692278112.5304537-UTR-M-pyrifera_M_contig7741:7865..79041692278112.5304537-UTR-M-pyrifera_M_contig7741:7865..7904Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7741 7866..7904 -
1622816674.9775865-UTR-M-pyrifera_M_contig7741:8515..85811622816674.9775865-UTR-M-pyrifera_M_contig7741:8515..8581Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7741 8516..8581 -
1692278112.5448842-UTR-M-pyrifera_M_contig7741:8515..85811692278112.5448842-UTR-M-pyrifera_M_contig7741:8515..8581Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7741 8516..8581 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816674.9071527-CDS-M-pyrifera_M_contig7741:4621..46991622816674.9071527-CDS-M-pyrifera_M_contig7741:4621..4699Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7741 4622..4699 -
1692278112.4864016-CDS-M-pyrifera_M_contig7741:4621..46991692278112.4864016-CDS-M-pyrifera_M_contig7741:4621..4699Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7741 4622..4699 -
1622816674.9205227-CDS-M-pyrifera_M_contig7741:5257..54271622816674.9205227-CDS-M-pyrifera_M_contig7741:5257..5427Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7741 5258..5427 -
1692278112.4969583-CDS-M-pyrifera_M_contig7741:5257..54271692278112.4969583-CDS-M-pyrifera_M_contig7741:5257..5427Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7741 5258..5427 -
1622816674.9340086-CDS-M-pyrifera_M_contig7741:6068..63931622816674.9340086-CDS-M-pyrifera_M_contig7741:6068..6393Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7741 6069..6393 -
1692278112.5095894-CDS-M-pyrifera_M_contig7741:6068..63931692278112.5095894-CDS-M-pyrifera_M_contig7741:6068..6393Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7741 6069..6393 -
1622816674.948099-CDS-M-pyrifera_M_contig7741:7808..78651622816674.948099-CDS-M-pyrifera_M_contig7741:7808..7865Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7741 7809..7865 -
1692278112.5197418-CDS-M-pyrifera_M_contig7741:7808..78651692278112.5197418-CDS-M-pyrifera_M_contig7741:7808..7865Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7741 7809..7865 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7741.18224.1prot_M-pyrifera_M_contig7741.18224.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7741 4622..7865 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7741.18224.1

>prot_M-pyrifera_M_contig7741.18224.1 ID=prot_M-pyrifera_M_contig7741.18224.1|Name=mRNA_M-pyrifera_M_contig7741.18224.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=210bp
MFLEMDEEDLAESDELGLDMQNIHAFLRLQAQLEALELSRNGETPPAPGA
SVLPTKPPPVTAASAVVGASAEGAGACRRSSTCSETWSLPCISVDADGNS
YFSDKTVALGTGTGSGIGALSELIPSAGVKFRETPGDYDFDFHTAPAKQF
IVSLDAGVDIEVTDGTRRIFPAGTVMFVEDTWGKGHRSRAVNGKRRRSLF
VIVPEDFSL*
back to top

mRNA from alignment at M-pyrifera_M_contig7741:4527..8581-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7741.18224.1 ID=mRNA_M-pyrifera_M_contig7741.18224.1|Name=mRNA_M-pyrifera_M_contig7741.18224.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4055bp|location=Sequence derived from alignment at M-pyrifera_M_contig7741:4527..8581- (Macrocystis pyrifera P11B4 male)
CCTTCTTCGTGGTCAGCCTCTAAACTGAGCTCATGGCTGTCGCAGGACCA GAAGATTGATCCTGAGGTGCGGTGCAACGCGCAACGTGTACACATATTTT GAATGTTCCAATCCAGCACAGGAGCAGTTTCGTGGGTACCTGTGGGTAAG ACCGTAGGTAGCTGTGGGTAAGACCGTAGGTAGCTGGTAGGCACGACGTT CGGGACTTCGAACTGACCATCAAGACAGTGACTGCCAGCAAGATCACCCA CTTTGTTGCGAAGTGATCAGTCTTCAAAGCGCCCCAGTTAGAGAGAGATA GCGAGATAGAATATTTTCTGGCCGCAGTCTGACAATCAATCATGGGGCAT CGAGAAATAGACAGCCAAAATATGGAACAAATTCAAATTTCACGACGCAC TGAATGCAGCAGGGTCAAGAGCTGAAGAACAATGTGCACGCCGCACTGAG AAAGCATACTCTTATATGGAGAGTTTACAGGCAGTACGTTTCACCAACCC GATTGTACGGTTTTACTGCTGTGTTACCAGTATGAGGACGATAGACCTTT CGCTGCTCAAGTACTCATCTCCCACGATACAAGTGTGGGTGGAACCTGTC GAAAAATGTTCGTTCTACTGGACTTGACCGCTGGGGATGGATCTGGATGC GTCCACCCCACCGCACCGCGCCTGCAGGCGATCGACGCTTTAGCCCTGTG CGACGTGAACGGGCGAATGTTCCTCGAGATGGACGAGGAGGACCTGGCGG AGTCTGACGAGCTAGGCCTTGATGTGAGCAGAGGTGGCTCTCCGCTGTAC TCGTAGCAGCTGCCACCATTATTACAACAATGATAATGTCATGTTGTGAT CGCCGCGAGCCCAGGAAGTGGCTGTCGTAAAAGCTAATATCATGAACGCA ACCTCACCTGATAATATTTCTTGCGAACGACAGAGTGGGCGTTTGCACAG GCTTTGCTGCTGAACCATGGTAGCAGTAACCTGCTGGGCTTCATTAAAGA CGAGCAGCGTACAGCATGCAAATCCGATCCGGGTGACAACAAACATAAAC TGCGACAACTCCGACCGCCCGACCTTCTGTACGTACTTGAATCTCGGCCA AACTTGATGGGGTGCTTGCTCGCTGCGGATGTGCCGGCTGCGCGCTCGGC TGAAGGATATGCCGGTAGTCGTCTAGTCTAGATGATAAGCGCTCTTGCAT GCCCGGCTACGTTCACCGAATATGCTATCAGAGAATACCGGTCTGCGTTA GCGCGTCAAGGCGTCGTTTGACCTTTTTATACGGGTTACAAGAAACAGTG TAGGGGACGGTCAGTCAAGGGGTTAAACCGCGGTCTCCTATTGATAGCAC ATTTGACAATACCCTCGAAAAGGCTCAGTCTGTTCTTCAATGACATCAGG GTCGTTTTGTCACAAGAGAGATTTGCTTGCATGTGCTCTTGTCGTGTGGC AGCGGCCGCGGCGTTGCGTTGGGACCGGGAGCTACTCGCCTTCGTTCCAA GGAGATACACGCGCAGGTTATCACAAGGGTCCCCCTCTCAAGTCAAACTT CGCTCATTGACCATTTGGCGACGCGCAGACCAAAGGCGTTCACTGCTACA ACAGGAGTATTACACCAATCAAATCATCGAGGGTCTAGGACGGTATATAC CATGTATCTGGTACTACCGTAGTATTCGATACGCGGATGCTGACCATATG CTGACCGTCTTAAATCTTATGACTGTACCTCCACCCTCGCCGTCAGTCAA CCAACAATGTACTCTGCGTGCACACTAATACATACGTGTACCAGGCCCAG CCCAAAAGCCGTTCCCAAGGAGTGCATCAGTTTGACCCTGGGAGCCACTG GCTTGCACGCATGCGGACGGTACGGGCATACTGAAGGCGTACATGTATGT ATGTATCGCGTGTTAACCCTTCTACTAATAGGGCAAACTACAGTCCCGTT TTGGGGACAAACCACTCAAAAATGTACCAAGCAGTTTGTGCCCAAAATGA GACGACTGCAAGTCCCAAAAAGCTAACGTGGCAACGCGTTCATGAATTCC TCCAATGCCACACGTTTCATCATCCAGATTTTCGCTTTTGCATCGATTGA CAGAAGCACAGACAGCTGTAGCGGGTAGCTTAGCCCCCCCCCCCCCGCGC GCGCGCGCGCTTCCCTGTGCACCATCCGCCCTCGTCAGATGCAAAACATC CACGCCTTCTTGAGGCTCCAGGCCCAGCTGGAGGCCCTCGAACTCTCCCG AAACGGTGAGACCCCCCCCGCGCCCGGCGCCTCCGTGCTCCCTACAAAAC CGCCCCCCGTCACCGCCGCCTCCGCGGTGGTGGGGGCATCTGCCGAAGGG GCCGGAGCTTGCCGAAGGAGTTCCACCTGCTCGGAGACCTGGTCGCTGCC CTGCATTTCTGTTGACGCCGACGGCAACAGCTACTTCAGCGATAAGACGG TGGCTTTGGGCACGGGGACGGGGTCGGGGATCGGGGCTTTGTCGGAGCTG ATACCCAGCGCCGGTGAGAGAGAGACGAGACCTGATGGGTGCAGACAAGA GATATTAATTTAAATAGTGTCAATGATGTGTCGGCATGTAGTATTTTGTT TTCGCTGTTTTCGTTGTTTAGTTTTTGTTCGTCCATTATTTTTTGTTTTG GTATTGTTCGTTCGGTACTGTTTGTTTGGTTTTTGTTCGTTCGTTCGTTC ATGCTGTGGTGCTCGCTCGGGTTGGTTATGGTTGTGCGCTTGGACATACT CGACTGCTTTAATATGTATATAGCCTTGTGTTGAATAAACAGCTGTAATC TAGAGCGTTACAGCTACGTACCCTACATCAAGTCGTTGCTGTTCGGATTG GCAGTTCTCAACGGAACTCTAGCCTTAATCGTAGACATGCGTACTATGTT GTACTGGTGTACACACAGCAGCCAGTAATACTACATGTGACGTGTTGGTC GAATTTTCACAGTACCGTTTTGTCTTTTTTCGACACCCTCAATTTGTTTA CCCGTAGCTATACAAGATATTTGACGATGACGACAATTACTTCCTGGGAA GCGGGTTCGATTATCCTTTCCGTTTCCCGATTATCCCCCTCCCCCCTCCC CCACCCCCGCCCGCTTTTTTTGCTTTTAATCCGCGTTTCAACTTTTTCCA ACAGGTGTCAAGTTTCGGGAAACGCCGGGGGATTACGACTTCGACTTTCA CACTGCTCCCGCGAAGCAGTTTATCGTCAGCCTGGACGCGGGGGTAGATA TCGAGGTCACCGACGGCACGCGGAGAATTTTCCCGGCGGGGACCGTGATG TTCGTTGAAGACACGTGGGGAAAGGTAAAATATGTTTTCTCCGTTTATAG CAGTGGTCGTCGTTCTCACATTAACCCCGTCTTGGGGACTACAGAGGGGG GAAATTCGACGGTAAAAATTGGACGACAATTCAGCGACAGCAAACTTCGT GTTGGGGAGGGTGATAGAAAATTGGCGTTTCGAGTTACAATGCAAGGAGT CGTATGTACGGCATGAGATCATTGTCGCTATGTCGCCCCCCCCACACGTG GTCAAAGTCGTCGCCATAATCTATTAATAGTCCGCTGTCACAAGACAGGC TCTAATGTCTACTGTACCTTCAGAGGGGGTCTGCTCGTGTTGACGGTTAT CGCGTTGTACCGAGTCTCTACCGCGGACTCTTGCATGATATGTCCGTGCT GTGTGGCGAAAGAGTGCACGCGGGCTGGTCCCGCCCTTTTTTGCGATCCG TTGTCTCCAGCGCTCGAGTGGACGCAATATATACTCGCTCGACGCTCTCT GACAAAGTGCACGTGCCCCTTCGCCGTGTACCTATCCATCCTCCTCCCGT CCGTGTTTTTTTTTTCTTGTTGATTTTGTCAGGGTCACCGCTCGCGCGCT GTGAACGGAAAGCGGCGAAGGTCGCTCTTCGTGATCGTGCCAGAAGACTT CAGCTTGTGACGTCGCTTTCCCCGAACCGTGCTTTGCTTCCAATAGTAGC CGTTCGAGGTTTCATACTCGTAGCGCAAAAGCAGAGTTTATGCTGTCGGG CCGAC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig7741:4527..8581-

>mRNA_M-pyrifera_M_contig7741.18224.1 ID=mRNA_M-pyrifera_M_contig7741.18224.1|Name=mRNA_M-pyrifera_M_contig7741.18224.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1260bp|location=Sequence derived from alignment at M-pyrifera_M_contig7741:4527..8581- (Macrocystis pyrifera P11B4 male)
ATGTTCCTCGAGATGGACGAGGAGGACCTGGCGGAGTCTGACGAGCTAGG
CCTTGATATGTTCCTCGAGATGGACGAGGAGGACCTGGCGGAGTCTGACG
AGCTAGGCCTTGATATGCAAAACATCCACGCCTTCTTGAGGCTCCAGGCC
CAGCTGGAGGCCCTCGAACTCTCCCGAAACGGTGAGACCCCCCCCGCGCC
CGGCGCCTCCGTGCTCCCTACAAAACCGCCCCCCGTCACCGCCGCCTCCG
CGGTGGTGGGGGCATCTGCCGAAGGGGCCGGAGCTTGCCGAAGGAGTTCC
ACCTGCTCGGAGACCTGGTCGCTGCCCTGCATTTCTGTTGACGCCGACGG
CAACAGCTACTTCAGCGATAAGACGGTGGCTTTGGGCACGGGGACGGGGT
CGGGGATCGGGGCTTTGTCGGAGCTGATACCCAGCGCCGATGCAAAACAT
CCACGCCTTCTTGAGGCTCCAGGCCCAGCTGGAGGCCCTCGAACTCTCCC
GAAACGGTGAGACCCCCCCCGCGCCCGGCGCCTCCGTGCTCCCTACAAAA
CCGCCCCCCGTCACCGCCGCCTCCGCGGTGGTGGGGGCATCTGCCGAAGG
GGCCGGAGCTTGCCGAAGGAGTTCCACCTGCTCGGAGACCTGGTCGCTGC
CCTGCATTTCTGTTGACGCCGACGGCAACAGCTACTTCAGCGATAAGACG
GTGGCTTTGGGCACGGGGACGGGGTCGGGGATCGGGGCTTTGTCGGAGCT
GATACCCAGCGCCGGTGTCAAGTTTCGGGAAACGCCGGGGGATTACGACT
TCGACTTTCACACTGCTCCCGCGAAGCAGTTTATCGTCAGCCTGGACGCG
GGGGTAGATATCGAGGTCACCGACGGCACGCGGAGAATTTTCCCGGCGGG
GACCGTGATGTTCGTTGAAGACACGTGGGGAAAGGTGTCAAGTTTCGGGA
AACGCCGGGGGATTACGACTTCGACTTTCACACTGCTCCCGCGAAGCAGT
TTATCGTCAGCCTGGACGCGGGGGTAGATATCGAGGTCACCGACGGCACG
CGGAGAATTTTCCCGGCGGGGACCGTGATGTTCGTTGAAGACACGTGGGG
AAAGGGTCACCGCTCGCGCGCTGTGAACGGAAAGCGGCGAAGGTCGCTCT
TCGTGATCGTGCCAGAAGACTTCAGCTTGTGAGGTCACCGCTCGCGCGCT
GTGAACGGAAAGCGGCGAAGGTCGCTCTTCGTGATCGTGCCAGAAGACTT
CAGCTTGTGA
back to top