mRNA_M-pyrifera_M_contig77380.18221.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77380.18221.1
Unique NamemRNA_M-pyrifera_M_contig77380.18221.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig77380.18221.1 vs. uniprot
Match: UPI0005D061FC (mRNA export factor n=1 Tax=Plutella xylostella TaxID=51655 RepID=UPI0005D061FC)

HSP 1 Score: 64.3 bits (155), Expect = 1.560e-10
Identity = 27/64 (42.19%), Postives = 42/64 (65.62%), Query Frame = 1
Query:    1 ATAGGDGSVAIWDRQTQAMTCRLREGSDIPISAIAFNPAGSVLAYAHGYDWHKGGDHYDARRQP 192
            ATAG DG+ + WD+  +    +  E  D P++ +AFN +G + AYA GYDW KG +HY+ +++P
Sbjct:  272 ATAGSDGTFSFWDKDARTKL-KSSEALDQPLTRVAFNHSGQIFAYAVGYDWSKGHEHYNPQKKP 334          
BLAST of mRNA_M-pyrifera_M_contig77380.18221.1 vs. uniprot
Match: A0A0N0PD21_PAPMA (mRNA export factor n=5 Tax=Papilio TaxID=7145 RepID=A0A0N0PD21_PAPMA)

HSP 1 Score: 58.5 bits (140), Expect = 1.800e-8
Identity = 27/63 (42.86%), Postives = 38/63 (60.32%), Query Frame = 1
Query:    1 ATAGGDGSVAIWDRQTQAMTCRLREGSDIPISAIAFNPAGSVLAYAHGYDWHKGGDHYDARRQ 189
            AT G DGS + WD+  +    +  E  D P++  AFN +G V AYA GYDW KG +HY+  ++
Sbjct:  273 ATVGSDGSYSFWDKDARTKL-KSSETLDQPLTKCAFNHSGQVFAYAVGYDWSKGHEHYNPAKK 334          
BLAST of mRNA_M-pyrifera_M_contig77380.18221.1 vs. uniprot
Match: A0A8K0LKW3_9PEZI (WD40-repeat-containing domain protein n=1 Tax=Chaetomium sp. MPI-SDFR-AT-0129 TaxID=2823209 RepID=A0A8K0LKW3_9PEZI)

HSP 1 Score: 58.2 bits (139), Expect = 2.470e-8
Identity = 30/64 (46.88%), Postives = 39/64 (60.94%), Query Frame = 1
Query:    1 ATAGGDGSVAIWDRQTQAMTCRLREGSDIPISAIAFNPAGSVLAYAHGYDWHKGGDHYDARRQP 192
            ATAG DG+ AIW+ +  +   R  E S  PI+A++F   G  LAYA GYDW KG  HY +  +P
Sbjct:  279 ATAGSDGTFAIWNVKNHSTVERPHEASG-PITALSFARDGKALAYAVGYDWAKGVQHYPSAAKP 341          
BLAST of mRNA_M-pyrifera_M_contig77380.18221.1 vs. uniprot
Match: UPI000E6D6C7D (mRNA export factor n=1 Tax=Hyposmocoma kahamanoa TaxID=1477025 RepID=UPI000E6D6C7D)

HSP 1 Score: 56.6 bits (135), Expect = 8.960e-8
Identity = 25/63 (39.68%), Postives = 38/63 (60.32%), Query Frame = 1
Query:    1 ATAGGDGSVAIWDRQTQAMTCRLREGSDIPISAIAFNPAGSVLAYAHGYDWHKGGDHYDARRQ 189
            AT G DGS + WD+  +    +  E  D P++  AFN +G + AYA GYDW KG +H++  ++
Sbjct:  361 ATVGSDGSYSFWDKDARTKL-KSSEPLDQPLTKCAFNHSGQIFAYAVGYDWSKGHEHFNPAKK 422          
BLAST of mRNA_M-pyrifera_M_contig77380.18221.1 vs. uniprot
Match: A0A212FIG5_DANPL (mRNA export factor n=9 Tax=Obtectomera TaxID=104431 RepID=A0A212FIG5_DANPL)

HSP 1 Score: 56.2 bits (134), Expect = 1.190e-7
Identity = 26/63 (41.27%), Postives = 37/63 (58.73%), Query Frame = 1
Query:    1 ATAGGDGSVAIWDRQTQAMTCRLREGSDIPISAIAFNPAGSVLAYAHGYDWHKGGDHYDARRQ 189
            AT G DGS + WD+  +    +  E  D P++  AFN  G + AYA GYDW KG +HY+  ++
Sbjct:  272 ATVGSDGSFSFWDKDARTKL-KSSELIDQPLTKCAFNHNGQIFAYAVGYDWSKGHEHYNQAKK 333          
BLAST of mRNA_M-pyrifera_M_contig77380.18221.1 vs. uniprot
Match: A0A437AUG9_CHISP (Uncharacterized protein n=4 Tax=Obtectomera TaxID=104431 RepID=A0A437AUG9_CHISP)

HSP 1 Score: 55.8 bits (133), Expect = 1.630e-7
Identity = 25/63 (39.68%), Postives = 37/63 (58.73%), Query Frame = 1
Query:    1 ATAGGDGSVAIWDRQTQAMTCRLREGSDIPISAIAFNPAGSVLAYAHGYDWHKGGDHYDARRQ 189
            AT G DGS + WD+  +    +  E  D P++  AFN  G + AYA GYDW KG +H++  ++
Sbjct:  272 ATVGSDGSFSFWDKDARTKL-KPSEPLDQPLTKCAFNHTGQIFAYAVGYDWSKGHEHFNPAKK 333          
BLAST of mRNA_M-pyrifera_M_contig77380.18221.1 vs. uniprot
Match: UPI001182DC59 (mRNA export factor n=1 Tax=Manduca sexta TaxID=7130 RepID=UPI001182DC59)

HSP 1 Score: 55.8 bits (133), Expect = 1.630e-7
Identity = 25/59 (42.37%), Postives = 35/59 (59.32%), Query Frame = 1
Query:    1 ATAGGDGSVAIWDRQTQAMTCRLREGSDIPISAIAFNPAGSVLAYAHGYDWHKGGDHYD 177
            AT G DGS + WD+  +    +  E  D P++  AFN  G + AYA GYDW KG +H++
Sbjct:  272 ATVGSDGSFSFWDKDARTKL-KSTESLDQPLTKCAFNHNGQIFAYAVGYDWSKGHEHFN 329          
BLAST of mRNA_M-pyrifera_M_contig77380.18221.1 vs. uniprot
Match: A0A0C2MZI9_THEKT (mRNA export factor n=1 Tax=Thelohanellus kitauei TaxID=669202 RepID=A0A0C2MZI9_THEKT)

HSP 1 Score: 55.8 bits (133), Expect = 1.700e-7
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 1
Query:    1 ATAGGDGSVAIWDRQTQAMTCRLREGSDIPISAIAFNPAGSVLAYAHGYDWHKG 162
            A  GGDGSV+ WD Q  +    L+    +P+++IAF+ +G +LAYA GYDW +G
Sbjct:  636 ALGGGDGSVSFWDIQNHSNVLNLKAAC-LPVTSIAFDSSGRLLAYAIGYDWSRG 688          
BLAST of mRNA_M-pyrifera_M_contig77380.18221.1 vs. uniprot
Match: A0A7E5VJP8_TRINI (mRNA export factor n=6 Tax=Noctuidae TaxID=7100 RepID=A0A7E5VJP8_TRINI)

HSP 1 Score: 55.1 bits (131), Expect = 3.050e-7
Identity = 25/63 (39.68%), Postives = 37/63 (58.73%), Query Frame = 1
Query:    1 ATAGGDGSVAIWDRQTQAMTCRLREGSDIPISAIAFNPAGSVLAYAHGYDWHKGGDHYDARRQ 189
            AT G DGS + WD+  +    +  E  D P++  AFN  G + AYA GYDW KG +H++  ++
Sbjct:  272 ATVGSDGSFSFWDKDARTRL-KSSEMLDQPLTKCAFNHNGQIFAYAVGYDWSKGHEHFNPAKK 333          
BLAST of mRNA_M-pyrifera_M_contig77380.18221.1 vs. uniprot
Match: T1H0D9_MEGSC (Uncharacterized protein n=1 Tax=Megaselia scalaris TaxID=36166 RepID=T1H0D9_MEGSC)

HSP 1 Score: 55.1 bits (131), Expect = 3.070e-7
Identity = 26/64 (40.62%), Postives = 36/64 (56.25%), Query Frame = 1
Query:    1 ATAGGDGSVAIWDRQTQAMTCRLREGSDIPISAIAFNPAGSVLAYAHGYDWHKGGDHYDARRQP 192
            AT G DG+ + WD+  Q    +  E     I+  AFN  G + AYA GYDW KG +HY+  ++P
Sbjct:  281 ATVGSDGTFSFWDKD-QRTKLKSSETLSQSITKCAFNSNGQIFAYAIGYDWSKGHEHYNPAKKP 343          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77380.18221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
UPI0005D061FC1.560e-1042.19mRNA export factor n=1 Tax=Plutella xylostella Tax... [more]
A0A0N0PD21_PAPMA1.800e-842.86mRNA export factor n=5 Tax=Papilio TaxID=7145 RepI... [more]
A0A8K0LKW3_9PEZI2.470e-846.88WD40-repeat-containing domain protein n=1 Tax=Chae... [more]
UPI000E6D6C7D8.960e-839.68mRNA export factor n=1 Tax=Hyposmocoma kahamanoa T... [more]
A0A212FIG5_DANPL1.190e-741.27mRNA export factor n=9 Tax=Obtectomera TaxID=10443... [more]
A0A437AUG9_CHISP1.630e-739.68Uncharacterized protein n=4 Tax=Obtectomera TaxID=... [more]
UPI001182DC591.630e-742.37mRNA export factor n=1 Tax=Manduca sexta TaxID=713... [more]
A0A0C2MZI9_THEKT1.700e-746.30mRNA export factor n=1 Tax=Thelohanellus kitauei T... [more]
A0A7E5VJP8_TRINI3.050e-739.68mRNA export factor n=6 Tax=Noctuidae TaxID=7100 Re... [more]
T1H0D9_MEGSC3.070e-740.63Uncharacterized protein n=1 Tax=Megaselia scalaris... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77380contigM-pyrifera_M_contig77380:28..219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size192
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816674.6165495-CDS-M-pyrifera_M_contig77380:27..2191622816674.6165495-CDS-M-pyrifera_M_contig77380:27..219Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77380 28..219 +
1692278112.30153-CDS-M-pyrifera_M_contig77380:27..2191692278112.30153-CDS-M-pyrifera_M_contig77380:27..219Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77380 28..219 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77380.18221.1prot_M-pyrifera_M_contig77380.18221.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77380 28..219 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77380.18221.1

>prot_M-pyrifera_M_contig77380.18221.1 ID=prot_M-pyrifera_M_contig77380.18221.1|Name=mRNA_M-pyrifera_M_contig77380.18221.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=64bp
ATAGGDGSVAIWDRQTQAMTCRLREGSDIPISAIAFNPAGSVLAYAHGYD
WHKGGDHYDARRQP
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mRNA from alignment at M-pyrifera_M_contig77380:28..219+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77380.18221.1 ID=mRNA_M-pyrifera_M_contig77380.18221.1|Name=mRNA_M-pyrifera_M_contig77380.18221.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=192bp|location=Sequence derived from alignment at M-pyrifera_M_contig77380:28..219+ (Macrocystis pyrifera P11B4 male)
GCGACCGCTGGTGGGGACGGAAGCGTGGCTATCTGGGACAGGCAAACCCA AGCCATGACCTGCCGCCTGCGAGAAGGATCCGACATCCCAATCTCCGCCA TCGCCTTCAACCCAGCTGGATCGGTACTTGCCTATGCCCACGGGTACGAC TGGCACAAGGGTGGGGATCACTACGATGCAAGAAGACAACCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77380:28..219+

>mRNA_M-pyrifera_M_contig77380.18221.1 ID=mRNA_M-pyrifera_M_contig77380.18221.1|Name=mRNA_M-pyrifera_M_contig77380.18221.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig77380:28..219+ (Macrocystis pyrifera P11B4 male)
GCGACCGCTGGTGGGGACGGAAGCGTGGCTATCTGGGACAGGCAAACCCA
AGCCATGACCTGCCGCCTGCGAGAAGGATCCGACATCCCAATCTCCGCCA
TCGCCTTCAACCCAGCTGGATCGGTACTTGCCTATGCCCACGGGTACGAC
TGGCACAAGGGTGGGGATCACTACGATGCAAGAAGACAACCAGCGACCGC
TGGTGGGGACGGAAGCGTGGCTATCTGGGACAGGCAAACCCAAGCCATGA
CCTGCCGCCTGCGAGAAGGATCCGACATCCCAATCTCCGCCATCGCCTTC
AACCCAGCTGGATCGGTACTTGCCTATGCCCACGGGTACGACTGGCACAA
GGGTGGGGATCACTACGATGCAAGAAGACAACCA
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