mRNA_M-pyrifera_M_contig77380.18221.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig77380.18221.1 vs. uniprot
Match: UPI0005D061FC (mRNA export factor n=1 Tax=Plutella xylostella TaxID=51655 RepID=UPI0005D061FC) HSP 1 Score: 64.3 bits (155), Expect = 1.560e-10 Identity = 27/64 (42.19%), Postives = 42/64 (65.62%), Query Frame = 1 Query: 1 ATAGGDGSVAIWDRQTQAMTCRLREGSDIPISAIAFNPAGSVLAYAHGYDWHKGGDHYDARRQP 192 ATAG DG+ + WD+ + + E D P++ +AFN +G + AYA GYDW KG +HY+ +++P Sbjct: 272 ATAGSDGTFSFWDKDARTKL-KSSEALDQPLTRVAFNHSGQIFAYAVGYDWSKGHEHYNPQKKP 334
BLAST of mRNA_M-pyrifera_M_contig77380.18221.1 vs. uniprot
Match: A0A0N0PD21_PAPMA (mRNA export factor n=5 Tax=Papilio TaxID=7145 RepID=A0A0N0PD21_PAPMA) HSP 1 Score: 58.5 bits (140), Expect = 1.800e-8 Identity = 27/63 (42.86%), Postives = 38/63 (60.32%), Query Frame = 1 Query: 1 ATAGGDGSVAIWDRQTQAMTCRLREGSDIPISAIAFNPAGSVLAYAHGYDWHKGGDHYDARRQ 189 AT G DGS + WD+ + + E D P++ AFN +G V AYA GYDW KG +HY+ ++ Sbjct: 273 ATVGSDGSYSFWDKDARTKL-KSSETLDQPLTKCAFNHSGQVFAYAVGYDWSKGHEHYNPAKK 334
BLAST of mRNA_M-pyrifera_M_contig77380.18221.1 vs. uniprot
Match: A0A8K0LKW3_9PEZI (WD40-repeat-containing domain protein n=1 Tax=Chaetomium sp. MPI-SDFR-AT-0129 TaxID=2823209 RepID=A0A8K0LKW3_9PEZI) HSP 1 Score: 58.2 bits (139), Expect = 2.470e-8 Identity = 30/64 (46.88%), Postives = 39/64 (60.94%), Query Frame = 1 Query: 1 ATAGGDGSVAIWDRQTQAMTCRLREGSDIPISAIAFNPAGSVLAYAHGYDWHKGGDHYDARRQP 192 ATAG DG+ AIW+ + + R E S PI+A++F G LAYA GYDW KG HY + +P Sbjct: 279 ATAGSDGTFAIWNVKNHSTVERPHEASG-PITALSFARDGKALAYAVGYDWAKGVQHYPSAAKP 341
BLAST of mRNA_M-pyrifera_M_contig77380.18221.1 vs. uniprot
Match: UPI000E6D6C7D (mRNA export factor n=1 Tax=Hyposmocoma kahamanoa TaxID=1477025 RepID=UPI000E6D6C7D) HSP 1 Score: 56.6 bits (135), Expect = 8.960e-8 Identity = 25/63 (39.68%), Postives = 38/63 (60.32%), Query Frame = 1 Query: 1 ATAGGDGSVAIWDRQTQAMTCRLREGSDIPISAIAFNPAGSVLAYAHGYDWHKGGDHYDARRQ 189 AT G DGS + WD+ + + E D P++ AFN +G + AYA GYDW KG +H++ ++ Sbjct: 361 ATVGSDGSYSFWDKDARTKL-KSSEPLDQPLTKCAFNHSGQIFAYAVGYDWSKGHEHFNPAKK 422
BLAST of mRNA_M-pyrifera_M_contig77380.18221.1 vs. uniprot
Match: A0A212FIG5_DANPL (mRNA export factor n=9 Tax=Obtectomera TaxID=104431 RepID=A0A212FIG5_DANPL) HSP 1 Score: 56.2 bits (134), Expect = 1.190e-7 Identity = 26/63 (41.27%), Postives = 37/63 (58.73%), Query Frame = 1 Query: 1 ATAGGDGSVAIWDRQTQAMTCRLREGSDIPISAIAFNPAGSVLAYAHGYDWHKGGDHYDARRQ 189 AT G DGS + WD+ + + E D P++ AFN G + AYA GYDW KG +HY+ ++ Sbjct: 272 ATVGSDGSFSFWDKDARTKL-KSSELIDQPLTKCAFNHNGQIFAYAVGYDWSKGHEHYNQAKK 333
BLAST of mRNA_M-pyrifera_M_contig77380.18221.1 vs. uniprot
Match: A0A437AUG9_CHISP (Uncharacterized protein n=4 Tax=Obtectomera TaxID=104431 RepID=A0A437AUG9_CHISP) HSP 1 Score: 55.8 bits (133), Expect = 1.630e-7 Identity = 25/63 (39.68%), Postives = 37/63 (58.73%), Query Frame = 1 Query: 1 ATAGGDGSVAIWDRQTQAMTCRLREGSDIPISAIAFNPAGSVLAYAHGYDWHKGGDHYDARRQ 189 AT G DGS + WD+ + + E D P++ AFN G + AYA GYDW KG +H++ ++ Sbjct: 272 ATVGSDGSFSFWDKDARTKL-KPSEPLDQPLTKCAFNHTGQIFAYAVGYDWSKGHEHFNPAKK 333
BLAST of mRNA_M-pyrifera_M_contig77380.18221.1 vs. uniprot
Match: UPI001182DC59 (mRNA export factor n=1 Tax=Manduca sexta TaxID=7130 RepID=UPI001182DC59) HSP 1 Score: 55.8 bits (133), Expect = 1.630e-7 Identity = 25/59 (42.37%), Postives = 35/59 (59.32%), Query Frame = 1 Query: 1 ATAGGDGSVAIWDRQTQAMTCRLREGSDIPISAIAFNPAGSVLAYAHGYDWHKGGDHYD 177 AT G DGS + WD+ + + E D P++ AFN G + AYA GYDW KG +H++ Sbjct: 272 ATVGSDGSFSFWDKDARTKL-KSTESLDQPLTKCAFNHNGQIFAYAVGYDWSKGHEHFN 329
BLAST of mRNA_M-pyrifera_M_contig77380.18221.1 vs. uniprot
Match: A0A0C2MZI9_THEKT (mRNA export factor n=1 Tax=Thelohanellus kitauei TaxID=669202 RepID=A0A0C2MZI9_THEKT) HSP 1 Score: 55.8 bits (133), Expect = 1.700e-7 Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 1 Query: 1 ATAGGDGSVAIWDRQTQAMTCRLREGSDIPISAIAFNPAGSVLAYAHGYDWHKG 162 A GGDGSV+ WD Q + L+ +P+++IAF+ +G +LAYA GYDW +G Sbjct: 636 ALGGGDGSVSFWDIQNHSNVLNLKAAC-LPVTSIAFDSSGRLLAYAIGYDWSRG 688
BLAST of mRNA_M-pyrifera_M_contig77380.18221.1 vs. uniprot
Match: A0A7E5VJP8_TRINI (mRNA export factor n=6 Tax=Noctuidae TaxID=7100 RepID=A0A7E5VJP8_TRINI) HSP 1 Score: 55.1 bits (131), Expect = 3.050e-7 Identity = 25/63 (39.68%), Postives = 37/63 (58.73%), Query Frame = 1 Query: 1 ATAGGDGSVAIWDRQTQAMTCRLREGSDIPISAIAFNPAGSVLAYAHGYDWHKGGDHYDARRQ 189 AT G DGS + WD+ + + E D P++ AFN G + AYA GYDW KG +H++ ++ Sbjct: 272 ATVGSDGSFSFWDKDARTRL-KSSEMLDQPLTKCAFNHNGQIFAYAVGYDWSKGHEHFNPAKK 333
BLAST of mRNA_M-pyrifera_M_contig77380.18221.1 vs. uniprot
Match: T1H0D9_MEGSC (Uncharacterized protein n=1 Tax=Megaselia scalaris TaxID=36166 RepID=T1H0D9_MEGSC) HSP 1 Score: 55.1 bits (131), Expect = 3.070e-7 Identity = 26/64 (40.62%), Postives = 36/64 (56.25%), Query Frame = 1 Query: 1 ATAGGDGSVAIWDRQTQAMTCRLREGSDIPISAIAFNPAGSVLAYAHGYDWHKGGDHYDARRQP 192 AT G DG+ + WD+ Q + E I+ AFN G + AYA GYDW KG +HY+ ++P Sbjct: 281 ATVGSDGTFSFWDKD-QRTKLKSSETLSQSITKCAFNSNGQIFAYAIGYDWSKGHEHYNPAKKP 343 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77380.18221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig77380.18221.1 >prot_M-pyrifera_M_contig77380.18221.1 ID=prot_M-pyrifera_M_contig77380.18221.1|Name=mRNA_M-pyrifera_M_contig77380.18221.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=64bp ATAGGDGSVAIWDRQTQAMTCRLREGSDIPISAIAFNPAGSVLAYAHGYDback to top mRNA from alignment at M-pyrifera_M_contig77380:28..219+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig77380.18221.1 ID=mRNA_M-pyrifera_M_contig77380.18221.1|Name=mRNA_M-pyrifera_M_contig77380.18221.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=192bp|location=Sequence derived from alignment at M-pyrifera_M_contig77380:28..219+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig77380:28..219+ >mRNA_M-pyrifera_M_contig77380.18221.1 ID=mRNA_M-pyrifera_M_contig77380.18221.1|Name=mRNA_M-pyrifera_M_contig77380.18221.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig77380:28..219+ (Macrocystis pyrifera P11B4 male)back to top |