mRNA_M-pyrifera_M_contig77373.18219.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77373.18219.1
Unique NamemRNA_M-pyrifera_M_contig77373.18219.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig77373.18219.1 vs. uniprot
Match: D5A8K6_PICSI (CPSF_A domain-containing protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=D5A8K6_PICSI)

HSP 1 Score: 155 bits (392), Expect = 3.240e-46
Identity = 71/108 (65.74%), Postives = 85/108 (78.70%), Query Frame = 1 
Query:    1 LIPGGADVLLYSTIHGAIGALVPFISREDVDFFSHLEMHMRQSVKSLCGRDHQAYRSAYFPVKSVIDGDLCEMFSQLSLDARESIAAELDRSPYEVMKKLEDLRNRCL 324
            LIPGG + L+Y T+ G+IGAL+PF SREDVDFFSHLEMH+RQ    LCGRDH  YRS+YFPVK VIDGDLCE F  L  D +  IA ELDR+P E++KKLED+RN+ +
Sbjct:   66 LIPGGGECLIYGTVMGSIGALLPFTSREDVDFFSHLEMHLRQEQPPLCGRDHMGYRSSYFPVKDVIDGDLCEQFPTLPPDLQRKIADELDRTPGEILKKLEDIRNKII 173
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BLAST of mRNA_M-pyrifera_M_contig77373.18219.1 vs. uniprot
Match: A0A6J1BBV3_9ROSI (spliceosome-associated protein 130 A-like n=1 Tax=Herrania umbratica TaxID=108875 RepID=A0A6J1BBV3_9ROSI)

HSP 1 Score: 155 bits (391), Expect = 4.590e-46
Identity = 71/108 (65.74%), Postives = 86/108 (79.63%), Query Frame = 1 
Query:    1 LIPGGADVLLYSTIHGAIGALVPFISREDVDFFSHLEMHMRQSVKSLCGRDHQAYRSAYFPVKSVIDGDLCEMFSQLSLDARESIAAELDRSPYEVMKKLEDLRNRCL 324
            LIPGG + +LY T  G++GAL+PF SR+DVDFFSHLEMHMRQ    LCGRDH AYRSAYFPVK VIDGDLCE F  L +D +  IA ELDR+P E++KKLE++RN+ +
Sbjct:   66 LIPGGGECVLYGTAMGSLGALLPFTSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPGEILKKLEEVRNKII 173
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BLAST of mRNA_M-pyrifera_M_contig77373.18219.1 vs. uniprot
Match: A0A0K9R345_SPIOL (CPSF_A domain-containing protein n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9R345_SPIOL)

HSP 1 Score: 154 bits (389), Expect = 5.390e-45
Identity = 68/108 (62.96%), Postives = 86/108 (79.63%), Query Frame = 1 
Query:    1 LIPGGADVLLYSTIHGAIGALVPFISREDVDFFSHLEMHMRQSVKSLCGRDHQAYRSAYFPVKSVIDGDLCEMFSQLSLDARESIAAELDRSPYEVMKKLEDLRNRCL 324
            LIPGG + ++Y T+ G++GA +PF SR+DVDFFSHLEMH+RQ    LCGRDH AYRSAYFPVK VIDGDLCE F  L +D +  IA ELDR+P E++KKLE++RN+ +
Sbjct:  126 LIPGGGECIIYGTVMGSLGAFLPFTSRDDVDFFSHLEMHLRQENPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDMQRKIADELDRTPAEILKKLEEIRNKII 233
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BLAST of mRNA_M-pyrifera_M_contig77373.18219.1 vs. uniprot
Match: A0A388JYF9_CHABU (Reverse transcriptase domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JYF9_CHABU)

HSP 1 Score: 164 bits (415), Expect = 8.660e-45
Identity = 75/108 (69.44%), Postives = 89/108 (82.41%), Query Frame = 1 
Query:    1 LIPGGADVLLYSTIHGAIGALVPFISREDVDFFSHLEMHMRQSVKSLCGRDHQAYRSAYFPVKSVIDGDLCEMFSQLSLDARESIAAELDRSPYEVMKKLEDLRNRCL 324
            LIPGG++ LLY T+ GA+GAL+PF SREDVDFFSHLEMH+RQ    LCGRDH AYRSAYFPVK V+DGDLCE +  LS+D +  IA ELDRSP E++KKLED+RNR +
Sbjct: 2131 LIPGGSESLLYGTVMGAVGALLPFASREDVDFFSHLEMHLRQENPPLCGRDHMAYRSAYFPVKDVVDGDLCEQYPMLSMDVQRKIADELDRSPGEIVKKLEDIRNRII 2238
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BLAST of mRNA_M-pyrifera_M_contig77373.18219.1 vs. uniprot
Match: A0A2P4XG75_9STRA (Pre-mRNA-splicing factor RSE1 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XG75_9STRA)

HSP 1 Score: 153 bits (386), Expect = 3.590e-44
Identity = 69/108 (63.89%), Postives = 88/108 (81.48%), Query Frame = 1 
Query:    1 LIPGGADVLLYSTIHGAIGALVPFISREDVDFFSHLEMHMRQSVKSLCGRDHQAYRSAYFPVKSVIDGDLCEMFSQLSLDARESIAAELDRSPYEVMKKLEDLRNRCL 324
            L+PGG + ++Y+TI G IGAL+PF SREDVDF++HLEM+MRQ    LCGRDH +YRS Y PVK+V DGDLCE FS LS++ + S+A +LDR+P EV+KKLED+RNR L
Sbjct:  157 LVPGGIEAIIYATIMGRIGALIPFASREDVDFYTHLEMYMRQEQPPLCGRDHLSYRSYYIPVKNVTDGDLCEQFSSLSVEKQASVAEDLDRTPAEVLKKLEDIRNRLL 264
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BLAST of mRNA_M-pyrifera_M_contig77373.18219.1 vs. uniprot
Match: A0A7S1T9P4_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T9P4_9CHLO)

HSP 1 Score: 152 bits (383), Expect = 8.430e-44
Identity = 71/106 (66.98%), Postives = 85/106 (80.19%), Query Frame = 1 
Query:    7 PGGADVLLYSTIHGAIGALVPFISREDVDFFSHLEMHMRQSVKSLCGRDHQAYRSAYFPVKSVIDGDLCEMFSQLSLDARESIAAELDRSPYEVMKKLEDLRNRCL 324
            PGG +V+L++ + GAIG ++PF SREDVDFFSHLEMH+RQ    LCGRDH A+RSAY PVK VIDGDLCE F+ LS D +  IA ELDR+P EV+KKLED+RNR L
Sbjct:  152 PGGIEVMLHAGVMGAIGCMLPFTSREDVDFFSHLEMHLRQEHPPLCGRDHMAFRSAYTPVKEVIDGDLCEQFALLSTDLQRRIAEELDRTPGEVLKKLEDIRNRIL 257
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BLAST of mRNA_M-pyrifera_M_contig77373.18219.1 vs. uniprot
Match: A0A6A6N6K9_HEVBR (CPSF_A domain-containing protein n=2 Tax=rosids TaxID=71275 RepID=A0A6A6N6K9_HEVBR)

HSP 1 Score: 156 bits (394), Expect = 2.470e-43
Identity = 70/108 (64.81%), Postives = 87/108 (80.56%), Query Frame = 1 
Query:    1 LIPGGADVLLYSTIHGAIGALVPFISREDVDFFSHLEMHMRQSVKSLCGRDHQAYRSAYFPVKSVIDGDLCEMFSQLSLDARESIAAELDRSPYEVMKKLEDLRNRCL 324
            LIPGG + ++Y T+ G++GAL+PF SR+DVDFFSHLEMH+RQ    LCGRDH AYRSAYFPVK VIDGDLCE F  L LD +  IA ELDR+P E++KKLE++RN+ +
Sbjct:  373 LIPGGGECIIYGTVMGSLGALLPFTSRDDVDFFSHLEMHLRQDHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPLDMQRKIADELDRTPGEILKKLEEIRNKII 480
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BLAST of mRNA_M-pyrifera_M_contig77373.18219.1 vs. uniprot
Match: UPI001F5EA347 (spliceosome-associated protein 130 A-like n=1 Tax=Vigna umbellata TaxID=87088 RepID=UPI001F5EA347)

HSP 1 Score: 147 bits (372), Expect = 3.530e-43
Identity = 66/108 (61.11%), Postives = 85/108 (78.70%), Query Frame = 1 
Query:    1 LIPGGADVLLYSTIHGAIGALVPFISREDVDFFSHLEMHMRQSVKSLCGRDHQAYRSAYFPVKSVIDGDLCEMFSQLSLDARESIAAELDRSPYEVMKKLEDLRNRCL 324
            LIPGG + +++ T+ G++GAL  F SR+DVDFFSHLEMHMRQ    LCGRDH +YRS+YFPVK VIDGDLCE F  L +D +  IA ELDR+P E++KKLE++RN+ +
Sbjct:   66 LIPGGGECIVFGTVMGSVGALHAFTSRDDVDFFSHLEMHMRQDHPPLCGRDHMSYRSSYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPGEILKKLEEVRNKII 173
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BLAST of mRNA_M-pyrifera_M_contig77373.18219.1 vs. uniprot
Match: A0A6J0JZN7_RAPSA (probable splicing factor 3B subunit 3 n=2 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0JZN7_RAPSA)

HSP 1 Score: 153 bits (387), Expect = 4.460e-43
Identity = 70/108 (64.81%), Postives = 85/108 (78.70%), Query Frame = 1 
Query:    1 LIPGGADVLLYSTIHGAIGALVPFISREDVDFFSHLEMHMRQSVKSLCGRDHQAYRSAYFPVKSVIDGDLCEMFSQLSLDARESIAAELDRSPYEVMKKLEDLRNRCL 324
            +IPGG++ ++Y T+ G+IGAL  F SR+DVDFFSHLEMHMRQ    LCGRDH AYRSAYFPVK VIDGDLCE F  L +D +  IA ELDR+P E++KKLED RN+ +
Sbjct:  277 MIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFSHLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPIDLQRKIADELDRTPAEILKKLEDARNKII 384
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BLAST of mRNA_M-pyrifera_M_contig77373.18219.1 vs. uniprot
Match: A0A843TQS4_COLES (DNA damage-binding protein 1 n=4 Tax=Araceae TaxID=4454 RepID=A0A843TQS4_COLES)

HSP 1 Score: 159 bits (402), Expect = 4.810e-43
Identity = 73/108 (67.59%), Postives = 87/108 (80.56%), Query Frame = 1 
Query:    1 LIPGGADVLLYSTIHGAIGALVPFISREDVDFFSHLEMHMRQSVKSLCGRDHQAYRSAYFPVKSVIDGDLCEMFSQLSLDARESIAAELDRSPYEVMKKLEDLRNRCL 324
            LIPGG + L+Y T+ G++GAL+PF SREDVDFFSHLEMHMRQ    LCGRDH AYRSAYFPVK VIDGDLCE F  LS D +  I+ ELDR+P E++KKLED+RN+ +
Sbjct: 1110 LIPGGGECLIYGTVMGSLGALLPFTSREDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPSLSPDLQRKISDELDRTPGEILKKLEDIRNKII 1217
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77373.18219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D5A8K6_PICSI3.240e-4665.74CPSF_A domain-containing protein n=1 Tax=Picea sit... [more]
A0A6J1BBV3_9ROSI4.590e-4665.74spliceosome-associated protein 130 A-like n=1 Tax=... [more]
A0A0K9R345_SPIOL5.390e-4562.96CPSF_A domain-containing protein n=1 Tax=Spinacia ... [more]
A0A388JYF9_CHABU8.660e-4569.44Reverse transcriptase domain-containing protein n=... [more]
A0A2P4XG75_9STRA3.590e-4463.89Pre-mRNA-splicing factor RSE1 n=1 Tax=Phytophthora... [more]
A0A7S1T9P4_9CHLO8.430e-4466.98Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A6A6N6K9_HEVBR2.470e-4364.81CPSF_A domain-containing protein n=2 Tax=rosids Ta... [more]
UPI001F5EA3473.530e-4361.11spliceosome-associated protein 130 A-like n=1 Tax=... [more]
A0A6J0JZN7_RAPSA4.460e-4364.81probable splicing factor 3B subunit 3 n=2 Tax=Raph... [more]
A0A843TQS4_COLES4.810e-4367.59DNA damage-binding protein 1 n=4 Tax=Araceae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77373contigM-pyrifera_M_contig77373:1..327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score158.7
Seed ortholog evalue1.6e-36
Seed eggNOG ortholog3694.POPTR_0008s04890.1
KEGG koko:K12830
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000375,GO:0000377,GO:0000398,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0005689,GO:0005730,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0009555,GO:0009791,GO:0009846,GO:0009856,GO:0009892,GO:0009894,GO:0009895,GO:0009908,GO:0009987,GO:0010467,GO:0010605,GO:0016070,GO:0016071,GO:0019222,GO:0022414,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0035670,GO:0042176,GO:0042177,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044706,GO:0044877,GO:0046483,GO:0048229,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048467,GO:0048481,GO:0048519,GO:0048608,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051704,GO:0055046,GO:0060255,GO:0061458,GO:0065007,GO:0070013,GO:0071005,GO:0071011,GO:0071013,GO:0071704,GO:0080090,GO:0090304,GO:0090567,GO:0097159,GO:0099402,GO:1901360,GO:1901363,GO:1902494,GO:1990904
EggNOG free text desc.Splicing factor 3B subunit
EggNOG OGs37HQ4@33090,3G8S8@35493,4JF5N@91835,KOG1898@1,KOG1898@2759
COG Functional cat.A
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03021,ko03036,ko03041
Exons1
Model size327
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816674.5526555-CDS-M-pyrifera_M_contig77373:0..3271622816674.5526555-CDS-M-pyrifera_M_contig77373:0..327Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77373 1..327 +
1692278112.2751582-CDS-M-pyrifera_M_contig77373:0..3271692278112.2751582-CDS-M-pyrifera_M_contig77373:0..327Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77373 1..327 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77373.18219.1prot_M-pyrifera_M_contig77373.18219.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77373 1..327 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77373.18219.1

>prot_M-pyrifera_M_contig77373.18219.1 ID=prot_M-pyrifera_M_contig77373.18219.1|Name=mRNA_M-pyrifera_M_contig77373.18219.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
LIPGGADVLLYSTIHGAIGALVPFISREDVDFFSHLEMHMRQSVKSLCGR
DHQAYRSAYFPVKSVIDGDLCEMFSQLSLDARESIAAELDRSPYEVMKKL
EDLRNRCL*
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mRNA from alignment at M-pyrifera_M_contig77373:1..327+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77373.18219.1 ID=mRNA_M-pyrifera_M_contig77373.18219.1|Name=mRNA_M-pyrifera_M_contig77373.18219.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=327bp|location=Sequence derived from alignment at M-pyrifera_M_contig77373:1..327+ (Macrocystis pyrifera P11B4 male)
CTCATCCCAGGCGGCGCCGACGTGCTGCTCTACTCGACTATCCACGGCGC
CATTGGAGCCCTCGTGCCCTTCATCTCTCGTGAGGATGTGGACTTCTTTT
CACACCTGGAGATGCACATGAGACAGAGCGTCAAGTCGCTCTGTGGCAGG
GATCACCAGGCCTACCGCTCCGCCTACTTCCCAGTCAAGAGCGTGATCGA
CGGCGACCTCTGTGAGATGTTCTCGCAGCTCTCACTTGACGCCAGAGAAT
CCATTGCTGCCGAGCTCGACCGCTCTCCCTACGAAGTGATGAAGAAGCTC
GAGGACCTCCGCAACAGGTGCCTTTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77373:1..327+

>mRNA_M-pyrifera_M_contig77373.18219.1 ID=mRNA_M-pyrifera_M_contig77373.18219.1|Name=mRNA_M-pyrifera_M_contig77373.18219.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig77373:1..327+ (Macrocystis pyrifera P11B4 male)
CTCATCCCAGGCGGCGCCGACGTGCTGCTCTACTCGACTATCCACGGCGC
CATTGGAGCCCTCGTGCCCTTCATCTCTCGTGAGGATGTGGACTTCTTTT
CACACCTGGAGATGCACATGAGACAGAGCGTCAAGTCGCTCTGTGGCAGG
GATCACCAGGCCTACCGCTCCGCCTACTTCCCAGTCAAGAGCGTGATCGA
CGGCGACCTCTGTGAGATGTTCTCGCAGCTCTCACTTGACGCCAGAGAAT
CCATTGCTGCCGAGCTCGACCGCTCTCCCTACGAAGTGATGAAGAAGCTC
GAGGACCTCCGCAACAGGTGCCTTTAGCTCATCCCAGGCGGCGCCGACGT
GCTGCTCTACTCGACTATCCACGGCGCCATTGGAGCCCTCGTGCCCTTCA
TCTCTCGTGAGGATGTGGACTTCTTTTCACACCTGGAGATGCACATGAGA
CAGAGCGTCAAGTCGCTCTGTGGCAGGGATCACCAGGCCTACCGCTCCGC
CTACTTCCCAGTCAAGAGCGTGATCGACGGCGACCTCTGTGAGATGTTCT
CGCAGCTCTCACTTGACGCCAGAGAATCCATTGCTGCCGAGCTCGACCGC
TCTCCCTACGAAGTGATGAAGAAGCTCGAGGACCTCCGCAACAGGTGCCT
TTAG
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