prot_M-pyrifera_M_contig77373.18219.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig77373.18219.1
Unique Nameprot_M-pyrifera_M_contig77373.18219.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length109
Homology
BLAST of mRNA_M-pyrifera_M_contig77373.18219.1 vs. uniprot
Match: D5A8K6_PICSI (CPSF_A domain-containing protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=D5A8K6_PICSI)

HSP 1 Score: 155 bits (392), Expect = 3.240e-46
Identity = 71/108 (65.74%), Postives = 85/108 (78.70%), Query Frame = 0
Query:    1 LIPGGADVLLYSTIHGAIGALVPFISREDVDFFSHLEMHMRQSVKSLCGRDHQAYRSAYFPVKSVIDGDLCEMFSQLSLDARESIAAELDRSPYEVMKKLEDLRNRCL 108
            LIPGG + L+Y T+ G+IGAL+PF SREDVDFFSHLEMH+RQ    LCGRDH  YRS+YFPVK VIDGDLCE F  L  D +  IA ELDR+P E++KKLED+RN+ +
Sbjct:   66 LIPGGGECLIYGTVMGSIGALLPFTSREDVDFFSHLEMHLRQEQPPLCGRDHMGYRSSYFPVKDVIDGDLCEQFPTLPPDLQRKIADELDRTPGEILKKLEDIRNKII 173          
BLAST of mRNA_M-pyrifera_M_contig77373.18219.1 vs. uniprot
Match: A0A6J1BBV3_9ROSI (spliceosome-associated protein 130 A-like n=1 Tax=Herrania umbratica TaxID=108875 RepID=A0A6J1BBV3_9ROSI)

HSP 1 Score: 155 bits (391), Expect = 4.590e-46
Identity = 71/108 (65.74%), Postives = 86/108 (79.63%), Query Frame = 0
Query:    1 LIPGGADVLLYSTIHGAIGALVPFISREDVDFFSHLEMHMRQSVKSLCGRDHQAYRSAYFPVKSVIDGDLCEMFSQLSLDARESIAAELDRSPYEVMKKLEDLRNRCL 108
            LIPGG + +LY T  G++GAL+PF SR+DVDFFSHLEMHMRQ    LCGRDH AYRSAYFPVK VIDGDLCE F  L +D +  IA ELDR+P E++KKLE++RN+ +
Sbjct:   66 LIPGGGECVLYGTAMGSLGALLPFTSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPGEILKKLEEVRNKII 173          
BLAST of mRNA_M-pyrifera_M_contig77373.18219.1 vs. uniprot
Match: A0A0K9R345_SPIOL (CPSF_A domain-containing protein n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9R345_SPIOL)

HSP 1 Score: 154 bits (389), Expect = 5.390e-45
Identity = 68/108 (62.96%), Postives = 86/108 (79.63%), Query Frame = 0
Query:    1 LIPGGADVLLYSTIHGAIGALVPFISREDVDFFSHLEMHMRQSVKSLCGRDHQAYRSAYFPVKSVIDGDLCEMFSQLSLDARESIAAELDRSPYEVMKKLEDLRNRCL 108
            LIPGG + ++Y T+ G++GA +PF SR+DVDFFSHLEMH+RQ    LCGRDH AYRSAYFPVK VIDGDLCE F  L +D +  IA ELDR+P E++KKLE++RN+ +
Sbjct:  126 LIPGGGECIIYGTVMGSLGAFLPFTSRDDVDFFSHLEMHLRQENPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDMQRKIADELDRTPAEILKKLEEIRNKII 233          
BLAST of mRNA_M-pyrifera_M_contig77373.18219.1 vs. uniprot
Match: A0A388JYF9_CHABU (Reverse transcriptase domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JYF9_CHABU)

HSP 1 Score: 164 bits (415), Expect = 8.660e-45
Identity = 75/108 (69.44%), Postives = 89/108 (82.41%), Query Frame = 0
Query:    1 LIPGGADVLLYSTIHGAIGALVPFISREDVDFFSHLEMHMRQSVKSLCGRDHQAYRSAYFPVKSVIDGDLCEMFSQLSLDARESIAAELDRSPYEVMKKLEDLRNRCL 108
            LIPGG++ LLY T+ GA+GAL+PF SREDVDFFSHLEMH+RQ    LCGRDH AYRSAYFPVK V+DGDLCE +  LS+D +  IA ELDRSP E++KKLED+RNR +
Sbjct: 2131 LIPGGSESLLYGTVMGAVGALLPFASREDVDFFSHLEMHLRQENPPLCGRDHMAYRSAYFPVKDVVDGDLCEQYPMLSMDVQRKIADELDRSPGEIVKKLEDIRNRII 2238          
BLAST of mRNA_M-pyrifera_M_contig77373.18219.1 vs. uniprot
Match: A0A2P4XG75_9STRA (Pre-mRNA-splicing factor RSE1 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XG75_9STRA)

HSP 1 Score: 153 bits (386), Expect = 3.590e-44
Identity = 69/108 (63.89%), Postives = 88/108 (81.48%), Query Frame = 0
Query:    1 LIPGGADVLLYSTIHGAIGALVPFISREDVDFFSHLEMHMRQSVKSLCGRDHQAYRSAYFPVKSVIDGDLCEMFSQLSLDARESIAAELDRSPYEVMKKLEDLRNRCL 108
            L+PGG + ++Y+TI G IGAL+PF SREDVDF++HLEM+MRQ    LCGRDH +YRS Y PVK+V DGDLCE FS LS++ + S+A +LDR+P EV+KKLED+RNR L
Sbjct:  157 LVPGGIEAIIYATIMGRIGALIPFASREDVDFYTHLEMYMRQEQPPLCGRDHLSYRSYYIPVKNVTDGDLCEQFSSLSVEKQASVAEDLDRTPAEVLKKLEDIRNRLL 264          
BLAST of mRNA_M-pyrifera_M_contig77373.18219.1 vs. uniprot
Match: A0A7S1T9P4_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T9P4_9CHLO)

HSP 1 Score: 152 bits (383), Expect = 8.430e-44
Identity = 71/106 (66.98%), Postives = 85/106 (80.19%), Query Frame = 0
Query:    3 PGGADVLLYSTIHGAIGALVPFISREDVDFFSHLEMHMRQSVKSLCGRDHQAYRSAYFPVKSVIDGDLCEMFSQLSLDARESIAAELDRSPYEVMKKLEDLRNRCL 108
            PGG +V+L++ + GAIG ++PF SREDVDFFSHLEMH+RQ    LCGRDH A+RSAY PVK VIDGDLCE F+ LS D +  IA ELDR+P EV+KKLED+RNR L
Sbjct:  152 PGGIEVMLHAGVMGAIGCMLPFTSREDVDFFSHLEMHLRQEHPPLCGRDHMAFRSAYTPVKEVIDGDLCEQFALLSTDLQRRIAEELDRTPGEVLKKLEDIRNRIL 257          
BLAST of mRNA_M-pyrifera_M_contig77373.18219.1 vs. uniprot
Match: A0A6A6N6K9_HEVBR (CPSF_A domain-containing protein n=2 Tax=rosids TaxID=71275 RepID=A0A6A6N6K9_HEVBR)

HSP 1 Score: 156 bits (394), Expect = 2.470e-43
Identity = 70/108 (64.81%), Postives = 87/108 (80.56%), Query Frame = 0
Query:    1 LIPGGADVLLYSTIHGAIGALVPFISREDVDFFSHLEMHMRQSVKSLCGRDHQAYRSAYFPVKSVIDGDLCEMFSQLSLDARESIAAELDRSPYEVMKKLEDLRNRCL 108
            LIPGG + ++Y T+ G++GAL+PF SR+DVDFFSHLEMH+RQ    LCGRDH AYRSAYFPVK VIDGDLCE F  L LD +  IA ELDR+P E++KKLE++RN+ +
Sbjct:  373 LIPGGGECIIYGTVMGSLGALLPFTSRDDVDFFSHLEMHLRQDHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPLDMQRKIADELDRTPGEILKKLEEIRNKII 480          
BLAST of mRNA_M-pyrifera_M_contig77373.18219.1 vs. uniprot
Match: UPI001F5EA347 (spliceosome-associated protein 130 A-like n=1 Tax=Vigna umbellata TaxID=87088 RepID=UPI001F5EA347)

HSP 1 Score: 147 bits (372), Expect = 3.530e-43
Identity = 66/108 (61.11%), Postives = 85/108 (78.70%), Query Frame = 0
Query:    1 LIPGGADVLLYSTIHGAIGALVPFISREDVDFFSHLEMHMRQSVKSLCGRDHQAYRSAYFPVKSVIDGDLCEMFSQLSLDARESIAAELDRSPYEVMKKLEDLRNRCL 108
            LIPGG + +++ T+ G++GAL  F SR+DVDFFSHLEMHMRQ    LCGRDH +YRS+YFPVK VIDGDLCE F  L +D +  IA ELDR+P E++KKLE++RN+ +
Sbjct:   66 LIPGGGECIVFGTVMGSVGALHAFTSRDDVDFFSHLEMHMRQDHPPLCGRDHMSYRSSYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPGEILKKLEEVRNKII 173          
BLAST of mRNA_M-pyrifera_M_contig77373.18219.1 vs. uniprot
Match: A0A6J0JZN7_RAPSA (probable splicing factor 3B subunit 3 n=2 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0JZN7_RAPSA)

HSP 1 Score: 153 bits (387), Expect = 4.460e-43
Identity = 70/108 (64.81%), Postives = 85/108 (78.70%), Query Frame = 0
Query:    1 LIPGGADVLLYSTIHGAIGALVPFISREDVDFFSHLEMHMRQSVKSLCGRDHQAYRSAYFPVKSVIDGDLCEMFSQLSLDARESIAAELDRSPYEVMKKLEDLRNRCL 108
            +IPGG++ ++Y T+ G+IGAL  F SR+DVDFFSHLEMHMRQ    LCGRDH AYRSAYFPVK VIDGDLCE F  L +D +  IA ELDR+P E++KKLED RN+ +
Sbjct:  277 MIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFSHLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPIDLQRKIADELDRTPAEILKKLEDARNKII 384          
BLAST of mRNA_M-pyrifera_M_contig77373.18219.1 vs. uniprot
Match: A0A843TQS4_COLES (DNA damage-binding protein 1 n=4 Tax=Araceae TaxID=4454 RepID=A0A843TQS4_COLES)

HSP 1 Score: 159 bits (402), Expect = 4.810e-43
Identity = 73/108 (67.59%), Postives = 87/108 (80.56%), Query Frame = 0
Query:    1 LIPGGADVLLYSTIHGAIGALVPFISREDVDFFSHLEMHMRQSVKSLCGRDHQAYRSAYFPVKSVIDGDLCEMFSQLSLDARESIAAELDRSPYEVMKKLEDLRNRCL 108
            LIPGG + L+Y T+ G++GAL+PF SREDVDFFSHLEMHMRQ    LCGRDH AYRSAYFPVK VIDGDLCE F  LS D +  I+ ELDR+P E++KKLED+RN+ +
Sbjct: 1110 LIPGGGECLIYGTVMGSLGALLPFTSREDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPSLSPDLQRKISDELDRTPGEILKKLEDIRNKII 1217          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77373.18219.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D5A8K6_PICSI3.240e-4665.74CPSF_A domain-containing protein n=1 Tax=Picea sit... [more]
A0A6J1BBV3_9ROSI4.590e-4665.74spliceosome-associated protein 130 A-like n=1 Tax=... [more]
A0A0K9R345_SPIOL5.390e-4562.96CPSF_A domain-containing protein n=1 Tax=Spinacia ... [more]
A0A388JYF9_CHABU8.660e-4569.44Reverse transcriptase domain-containing protein n=... [more]
A0A2P4XG75_9STRA3.590e-4463.89Pre-mRNA-splicing factor RSE1 n=1 Tax=Phytophthora... [more]
A0A7S1T9P4_9CHLO8.430e-4466.98Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A6A6N6K9_HEVBR2.470e-4364.81CPSF_A domain-containing protein n=2 Tax=rosids Ta... [more]
UPI001F5EA3473.530e-4361.11spliceosome-associated protein 130 A-like n=1 Tax=... [more]
A0A6J0JZN7_RAPSA4.460e-4364.81probable splicing factor 3B subunit 3 n=2 Tax=Raph... [more]
A0A843TQS4_COLES4.810e-4367.59DNA damage-binding protein 1 n=4 Tax=Araceae TaxID... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.980.30coord: 26..106
e-value: 8.1E-7
score: 31.1
NoneNo IPR availablePANTHERPTHR10644DNA REPAIR/RNA PROCESSING CPSF FAMILYcoord: 1..100
NoneNo IPR availablePANTHERPTHR10644:SF1SPLICING FACTOR 3B SUBUNIT 3coord: 1..100
IPR004871Cleavage/polyadenylation specificity factor, A subunit, C-terminalPFAMPF03178CPSF_Acoord: 1..75
e-value: 4.0E-26
score: 92.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77373contigM-pyrifera_M_contig77373:1..327 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77373.18219.1mRNA_M-pyrifera_M_contig77373.18219.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig77373 1..327 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig77373.18219.1 ID=prot_M-pyrifera_M_contig77373.18219.1|Name=mRNA_M-pyrifera_M_contig77373.18219.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
LIPGGADVLLYSTIHGAIGALVPFISREDVDFFSHLEMHMRQSVKSLCGR
DHQAYRSAYFPVKSVIDGDLCEMFSQLSLDARESIAAELDRSPYEVMKKL
EDLRNRCL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004871Cleavage/polyA-sp_fac_asu_C