mRNA_M-pyrifera_M_contig7642.18016.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig7642.18016.1 vs. uniprot
Match: A0A6H5KYM4_9PHAE (MYB protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYM4_9PHAE) HSP 1 Score: 342 bits (878), Expect = 8.440e-98 Identity = 412/1041 (39.58%), Postives = 494/1041 (47.45%), Query Frame = 1 Query: 1 RTDNHIKNHWNSSMKRRLQMYLERTYGSAYS-----GGPSAEAASPEQP---EGDPV-KEKKGRAAKQKXXXXXXX--DGGRFDLRGDLNGAVRAVRSSKSSGNVGRPKGSKQKQETVKAAKGKKSDPADKKKAKNKQASXXXXRPPG---------------------------KNMTPALPGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVEVDIHSGFGTPGRSVWRDGGGGLPAPGVRHNKYMKCASPWRASLSCRQSPYTGS-----KRSPSDAGLEGASRPDQRERAGPAPCGFSGPGDSEKWDA-MKDVVYTPSKKPVLSGA--EMLSPDALETSFIASYDAASDAGMLPTFSPYSQSSRQGDAASPGR----GAFSRSLLSPPRSSGKGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGRVGRYRXXXXXXXXXXXXXXXXXXXXXXXXMHGRARVWPSPRKGYASQAEGVGGGDRGRVVGQGARFSARPHEXXXXXXXXXXRALLSPDRPSRNHHWKGSA-ERERAMYDYDSDGADAGGTSTRGSPSGARG-CSPRSGRRGRGDEGRRVTSSRGDPYEPWGDEREGSWNGEAEVTQGGGEDEEEETEG---ETSESAYTPSNTQGRG-----GLKRRSDARAG--SASHLTPA-----LDRGIMDDTLLAAVSLVSFQKPRVNDAPRLRGPLGTNALRVTLGTPVVEAGTSSISTSVQAKLSLPRTAPTPTAPSLPGNGGSXXXXXXXXXXXXXXXKDLRGPR--AAWAARLERSRGDXXXXXXXXXXXXXXXXXXXXXXXXGVHLSASSASKARVASTPRGMFDAVSPAAPVEENGTPYSVCRVDRHGSAMKATAQPSAHEEHRREAGAGEDADGGEEMAGGAHG---------------GEAMCRTPLKQMERRGAAGSLRGHVASREGWSG---GSCATPPSVA----RGTPCSGSKFRSGDGDE-SDYSDYEQYCAVKPTPSKRVATPPSATKRLFAD 2847 RTDNHIKNHWNSSMKRRLQ+YLE+TYGSAY G PS +A + P G+ K KK RAAK K +GGRFDLRGD++ A+RAVRS K++G VGRPKGS + V +A KK+ K XXXX K + XXXXXXXXXXXXXXX + E + G GT +GGGG+ A + + + R+ G KRS +AGL G+ RPD+R+R G F + W A M+D TPSKKP L+G+ + LSP ALET IASYDA SD+ +LPT SP+SQ+SR G ASP R G F RSLLSPPRS+GK G +H R + W SP +G ++A G GG G+G P + L +P + R+ WK + + E+ + A A G + +P AR + RSGR G GD+ R+ TSS GDP+ PWG G +A G ++ EG ETS S + Q R G+ R + SH TP+ D DDTL AA SLVSFQKPRV +APRL+GPLGT+ALRVTLGTPVV GT SIS+SVQAKLSLPRT+P PS P XXXXXXXXXXXX LR P A AA LE XXXXXXXXXX L AS+ + R + GMFDAVSP APV+E+GTPYSVCRVDR G AT +A E + E G+ E +C TPLK AA AS GW G G ATPP +A GTPCSGSKFRS D DE SDYSDYE YC+VKPTP+KRV +PPSATKRLFAD Sbjct: 147 RTDNHIKNHWNSSMKRRLQVYLEKTYGSAYGDVPEQGQPSGKAEATPSPLLIGGESGGKGKKRRAAKHKLNKSATFVPEGGRFDLRGDVDSALRAVRSGKAAGAVGRPKGSSNSSKRVSSAA--------KKETKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATKKKTSAGAKRVXXXXXXXXXXXXXXXXRKKTKRSRPGTGGAVELGGTAQSTSDEDPRFWDKAGDENSESEDRDGVGT-------EGGGGVDAD-CKGRSWCGATGASSSVFDFRRDHPGGKGGGSGKRSSVEAGLAGSPRPDRRDRVG-IHADFMMARECHDWAASMRDNANTPSKKPNLTGSSTDTLSPIALETKLIASYDAGSDSSILPTLSPFSQTSRLG-YASPSRDGGGGQFGRSLLSPPRSAGK---------LMYGSEGGGRVWSSSPNGPATLGSHAGSSSTDSLEAARFSLSPFPRSGGGGLGMLHLRDKAWASPIRG--NRAAGREGGHAEERDGKGVAKDKGPQQQELVGG-----GLPTPSKSPRSRDWKAAVGDSEKRFFAA----AAANGAAAAITPGEAREMAAKRSGRVGGGDQ-RQSTSSPGDPFGPWGRRERGESRDDARDAAAG-----KDREGHRVETSSSWSCDKSEQEREDTTPPGVPRNPKCLGTPCAPSHTTPSPPATSTDTSDADDTLQAAASLVSFQKPRVGEAPRLKGPLGTSALRVTLGTPVVSTGTPSISSSVQAKLSLPRTSPPRGCPSFPDKETGGXXXXXXXXXXXXVAAGLRDPMETAYRAAGLE-----------VGSSAEGGXXXXXXXXXXXSFLGASAEAVKRKSGPCNGMFDAVSPTAPVQESGTPYSVCRVDRKGR-RNATPHAAASAEQKTEHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXATCVAEPLCHTPLKPAAAGRAAAPEAAARAS--GWLGSVSGPWATPPPMAVNMTMGTPCSGSKFRSADDDEESDYSDYETYCSVKPTPTKRVLSPPSATKRLFAD 1129
BLAST of mRNA_M-pyrifera_M_contig7642.18016.1 vs. uniprot
Match: D7G7U2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U2_ECTSI) HSP 1 Score: 277 bits (708), Expect = 1.700e-77 Identity = 305/725 (42.07%), Postives = 366/725 (50.48%), Query Frame = 1 Query: 862 PGDSEKWDA-MKDVVYTPSKKPVLSGA--EMLSPDALETSFIASYDAASDAGMLPTFSPYSQSSRQGDAASPGR----GAFSRSLLSPPRSSGK---GCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGRVGRYRXXXXXXXXXXXXXXXXXXXXXXXXMHGRARVWPSPRKGYASQAEGVGGGDRGRVVGQGARFSARPHEXXXXXXXXXXRALLSPDRPSRNHHWKGSA-ERERAMYDYDSDGADAGGTSTRGSPSGARG-CSPRSGRRGRGDEGRRVTSSRGDPYEPWGD-EREGSWNGEAEVTQGGGEDEEEETEGETSESAYTPSNTQGRG-----GLKRRSDARAG--SASHLTPA-----LDRGIMDDTLLAAVSLVSFQKPRVNDAPRLRGPLGTNALRVTLGTPVVEAGTSSISTSVQAKLSLPRTAPTPTAPSLPGN--GGSXXXXXXXXXXXXXXXKDLRGPRAAWAARLERSRGDXXXXXXXXXXXXXXXXXXXXXXXXGVHLSASSASKARVASTPRGMFDAVSPAAPVEENGTPYSVCRVDRHGSAMKATAQPSAHEEHRREAGAGEDADGGEEM------------------AGGAHGGEAMCRTPLKQMERRGAAGSLRGHVASREGWSG---GSCATPP----SVARGTPCSGSKFRSGDGDE-SDYSDYEQYCAVKPTPSKRVATPPSATKRLFADA--AEEGMAR 2871 P + + W A M+D TPSKKP L+G+ + LSP ALET IASYDA SD+ +LPT SP+SQ+SR G ASP R G F RSLLSPPRS+GK G G E R+ XXXXXX +H R + W SP +G +A G GG G+G P + L +P + R+ WK + + E+ + +P AR + RS R G GD+ R+ +S GDP+ WG ER GS +G + GG+D E ETS S + Q R G+ R + SH TP+ D DDTL AA SLVSFQKPR+ +APRL+GPLGT+ALRVTLGTPVV GT SIS+SVQAKLSLPRT+P PS P GG XXXXXXXXXXX +D A AA LE XXXXXXXXX L AS+ + R + GMFDAVSP APV+E+GTPYSVCRV+R G AT +A + + E G+ A G E +C TPLK AA G A GWSG G ATPP ++ GTPCSGSKFRS D DE SDYSDYE YC+VKPTPSKRV +PPSATKRLFAD AE G+ R Sbjct: 3 PRECDDWAASMRDTSNTPSKKPNLTGSSTDTLSPIALETKLIASYDAGSDSSILPTLSPFSQTSRLG-YASPSRDGNGGQFGRSLLSPPRSAGKLMYGSGGRGRVWSSSPNGPATLGSHAGSSSTDSLE--AARFSLSPFPRSGGXXXXXXLGM------LHLRDKAWASPVRG--DRAAGKEGGHAEERDGKGVAKDKGPQQQGLVGG-----GLPTPSKSPRSRDWKAAVGDSEKRFFXXXXXXXXXXXXXXXITPEEAREMAAKRSWRVGGGDQ-RQSPASPGDPFGSWGRRERGGSRDGARDAA--GGKDREAHRV-ETSSSWSCDKSEQEREDTTPPGVPRHPKCLGTPRAPSHTTPSPPATSTDASDADDTLQAAASLVSFQKPRLGEAPRLKGPLGTSALRVTLGTPVVSTGTPSISSSVQAKLSLPRTSPPRGPPSFPAKETGGXXXXXXXXXXXXAAGLRDPMET-AYRAAGLE------------VGSSAEGGXXXXXXXXXXXXLGASAEAVKRKSGPSNGMFDAVSPTAPVQESGTPYSVCRVERKGR-PNATPPAAASADQKTEHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATCGAEPLCHTPLKPAAAGRAAAP--GMAARASGWSGSVSGPWATPPPMSMNMTMGTPCSGSKFRSADDDEESDYSDYETYCSVKPTPSKRVLSPPSATKRLFADVGDAETGLVR 691 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7642.18016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig7642.18016.1 >prot_M-pyrifera_M_contig7642.18016.1 ID=prot_M-pyrifera_M_contig7642.18016.1|Name=mRNA_M-pyrifera_M_contig7642.18016.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=957bp RTDNHIKNHWNSSMKRRLQMYLERTYGSAYSGGPSAEAASPEQPEGDPVKback to top mRNA from alignment at M-pyrifera_M_contig7642:1311..8262+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig7642.18016.1 ID=mRNA_M-pyrifera_M_contig7642.18016.1|Name=mRNA_M-pyrifera_M_contig7642.18016.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=6952bp|location=Sequence derived from alignment at M-pyrifera_M_contig7642:1311..8262+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig7642:1311..8262+ >mRNA_M-pyrifera_M_contig7642.18016.1 ID=mRNA_M-pyrifera_M_contig7642.18016.1|Name=mRNA_M-pyrifera_M_contig7642.18016.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=5742bp|location=Sequence derived from alignment at M-pyrifera_M_contig7642:1311..8262+ (Macrocystis pyrifera P11B4 male)back to top |