mRNA_M-pyrifera_M_contig76341.17997.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76341.17997.1
Unique NamemRNA_M-pyrifera_M_contig76341.17997.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig76341.17997.1 vs. uniprot
Match: I0YXR6_COCSC (SUMO-activating enzyme 1B n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YXR6_COCSC)

HSP 1 Score: 65.5 bits (158), Expect = 1.210e-8
Identity = 75/295 (25.42%), Postives = 130/295 (44.07%), Query Frame = 1 
Query:    1 SQVAKNLALSGF-SITVADERPATKAPGLALLSGLPLTDGVCGGVEEGLTVGEMAVRSLSALNPLAKMAAV--SFEDHSD-EFLKSFDLIVASRMSLSEAVALGSRCRHLGVNFTTIRSHGPFSVVIQD-HGSDFAYVLDEKQGVDGAEGKKGDESSEVRHVSFPTIEDAVAFSAWSSISHRLSHPLFLALCVLDDSIRVDDDVEGRYH--------EERVREKLCAKGCDDAWHDSTISFL------SELLPVWSTVDYAAAA--------IAGGEIALDLIRLVSHRGEPACN 804
            ++V +N+AL+G  S+T+ D+ P  K+   A    +P         E+G +V E +  +L  +NPL K+AA+  S     D EFL+ F++++ +    S  +   + CR LGV F T  S G  S    + H  ++  ++     +                ++FP++  A++   W ++  R +H L   L V  D     +   GR+         +ER  E L A  C  A  D+    L       +++P     +Y   A        + GG +A ++++ VSH+GEP  N
Sbjct:   44 AEVCQNIALAGVGSLTLLDDAPC-KSEAAACNFLVPAD------AEQGQSVAEASAATLREMNPLVKIAALPGSLPPIPDPEFLRGFEVVLITSAPFSTLLQYDAACRQLGVAFFTASSRGSTSFFFANLHTHEYTPLVCPSCAL----------------IAFPSLASALS-QPWKTLRARYTHKLVYVLRVCADF----ESHAGRFPTAEDLPALQERAHE-LAADACAAAAADANGGPLPRDLIGEDVMPADILEEYVTGASELAPINAVLGGVLANEVLKAVSHKGEPVKN 309
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BLAST of mRNA_M-pyrifera_M_contig76341.17997.1 vs. uniprot
Match: A0A8J9WQT5_9CHLO (SUMO-activating enzyme subunit 1 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WQT5_9CHLO)

HSP 1 Score: 56.6 bits (135), Expect = 1.210e-5
Identity = 75/294 (25.51%), Postives = 126/294 (42.86%), Query Frame = 1 
Query:    1 SQVAKNLALSGF-SITVADERPATKAPGLALLSGLPLTDGVCGGVEEGLTVGEMAVRSLSALNPLAKMAAV--SFEDHSD-EFLKSFDLIVASRMSLSEAVALGSRCRHLGVNFTTIRSHGPFSVVIQDHGSDFAYVLDEKQGVDGAEGKKGDESSEVRHVSFPTIEDAVAFSAWSSISHRLSHPLFLALCVLDDSIRVDDDVEGRYH--------EERVREKLCAKGCDDAWHDSTIS------FLSELLPVWSTVDYAAA--------AIAGGEIALDLIRLVSHRGEPACN 804
            ++VAKN+AL+G  S+T+ D+  A      A+ + L   D      ++  +V E++  +L  +NPL K+ A+  S     D +FL+ F++++ +    S  +   + CR LGV F    S G  S    +  S     LD   G          E       +FP++  A++   W ++  R +H L   L V  D     +   GR+         +ER RE L A     A  D   +         +++P     +Y           A+ GG +A ++++ VSH+GEP  N
Sbjct:   44 AEVAKNIALAGVGSLTLLDD--ALCKSEAAVCNFLIPAD-----ADQAQSVAEVSAATLREMNPLVKITALPGSLPPIPDIDFLRGFEVVLITSAPFSTLLQYDAACRQLGVAFFMAASRGSTSFFFANLHSHEYTPLDTPAG----------EVPPKAVSAFPSLASALS-QPWKTMRARYTHKLVYVLRVCADF----ESHTGRFPTAADLPALQERARE-LAADARAAALADPASAPPPRDLITEDVMPADILEEYVTGTVELPPINAVLGGVLANEVLKAVSHKGEPVNN 314
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76341.17997.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
I0YXR6_COCSC1.210e-825.42SUMO-activating enzyme 1B n=1 Tax=Coccomyxa subell... [more]
A0A8J9WQT5_9CHLO1.210e-525.51SUMO-activating enzyme subunit 1 n=1 Tax=Coccomyxa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76341contigM-pyrifera_M_contig76341:213..1016 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score70.9
Seed ortholog evalue1.1e-09
Seed eggNOG ortholog3656.XP_008439894.1
Preferred nameSAE1A
KEGG koko:K10684
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0008641,GO:0009987,GO:0016874,GO:0016877,GO:0016925,GO:0018193,GO:0018205,GO:0019538,GO:0019948,GO:0032446,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0070647,GO:0071704,GO:1901564
EggNOG free text desc.SUMO-activating enzyme subunit
EggNOG OGs37PEC@33090,3GGIW@35493,4JDPC@91835,COG0476@1,KOG2014@2759
EC6.2.1.45
COG Functional cat.O
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons1
Model size804
Cds size804
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816662.7419121-CDS-M-pyrifera_M_contig76341:212..10161622816662.7419121-CDS-M-pyrifera_M_contig76341:212..1016Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76341 213..1016 -
1692278105.519756-CDS-M-pyrifera_M_contig76341:212..10161692278105.519756-CDS-M-pyrifera_M_contig76341:212..1016Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76341 213..1016 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76341.17997.1prot_M-pyrifera_M_contig76341.17997.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76341 213..1016 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76341.17997.1

>prot_M-pyrifera_M_contig76341.17997.1 ID=prot_M-pyrifera_M_contig76341.17997.1|Name=mRNA_M-pyrifera_M_contig76341.17997.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=268bp
SQVAKNLALSGFSITVADERPATKAPGLALLSGLPLTDGVCGGVEEGLTV
GEMAVRSLSALNPLAKMAAVSFEDHSDEFLKSFDLIVASRMSLSEAVALG
SRCRHLGVNFTTIRSHGPFSVVIQDHGSDFAYVLDEKQGVDGAEGKKGDE
SSEVRHVSFPTIEDAVAFSAWSSISHRLSHPLFLALCVLDDSIRVDDDVE
GRYHEERVREKLCAKGCDDAWHDSTISFLSELLPVWSTVDYAAAAIAGGE
IALDLIRLVSHRGEPACN
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mRNA from alignment at M-pyrifera_M_contig76341:213..1016-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76341.17997.1 ID=mRNA_M-pyrifera_M_contig76341.17997.1|Name=mRNA_M-pyrifera_M_contig76341.17997.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=804bp|location=Sequence derived from alignment at M-pyrifera_M_contig76341:213..1016- (Macrocystis pyrifera P11B4 male)
TCGCAGGTTGCAAAGAACTTGGCATTGAGCGGGTTTAGTATTACAGTTGC
TGATGAGAGGCCTGCAACCAAAGCACCAGGTTTGGCACTTCTTTCGGGGC
TTCCGTTGACTGATGGTGTATGTGGGGGTGTTGAAGAGGGGTTGACTGTT
GGAGAAATGGCTGTACGCTCACTATCAGCGTTGAACCCGCTTGCTAAGAT
GGCAGCCGTCTCTTTCGAGGACCATAGTGATGAATTTCTAAAGTCCTTTG
ACTTGATTGTTGCTTCCCGCATGTCATTGTCAGAGGCTGTTGCGTTGGGG
TCTCGATGTCGGCACCTAGGGGTGAATTTTACTACCATTCGAAGCCATGG
ACCTTTTTCCGTTGTGATACAAGACCATGGATCAGATTTTGCATATGTTT
TGGATGAAAAACAAGGAGTGGATGGAGCAGAGGGGAAGAAAGGTGATGAG
AGTAGCGAGGTGCGTCATGTTTCCTTCCCAACCATCGAAGACGCAGTTGC
GTTCTCTGCATGGAGTTCTATCTCACATCGACTATCTCACCCACTATTTC
TTGCATTGTGTGTTCTTGATGACAGTATTAGGGTGGATGATGACGTGGAA
GGCCGATATCATGAGGAACGAGTGCGGGAAAAGCTTTGTGCCAAAGGCTG
TGATGATGCTTGGCATGACTCTACCATATCCTTTCTTTCTGAACTTCTTC
CAGTATGGTCCACTGTAGACTATGCAGCAGCTGCCATTGCTGGTGGAGAA
ATTGCTCTTGACCTCATTCGTCTCGTATCACACCGTGGTGAACCTGCATG
CAAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76341:213..1016-

>mRNA_M-pyrifera_M_contig76341.17997.1 ID=mRNA_M-pyrifera_M_contig76341.17997.1|Name=mRNA_M-pyrifera_M_contig76341.17997.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1608bp|location=Sequence derived from alignment at M-pyrifera_M_contig76341:213..1016- (Macrocystis pyrifera P11B4 male)
TCGCAGGTTGCAAAGAACTTGGCATTGAGCGGGTTTAGTATTACAGTTGC
TGATGAGAGGCCTGCAACCAAAGCACCAGGTTTGGCACTTCTTTCGGGGC
TTCCGTTGACTGATGGTGTATGTGGGGGTGTTGAAGAGGGGTTGACTGTT
GGAGAAATGGCTGTACGCTCACTATCAGCGTTGAACCCGCTTGCTAAGAT
GGCAGCCGTCTCTTTCGAGGACCATAGTGATGAATTTCTAAAGTCCTTTG
ACTTGATTGTTGCTTCCCGCATGTCATTGTCAGAGGCTGTTGCGTTGGGG
TCTCGATGTCGGCACCTAGGGGTGAATTTTACTACCATTCGAAGCCATGG
ACCTTTTTCCGTTGTGATACAAGACCATGGATCAGATTTTGCATATGTTT
TGGATGAAAAACAAGGAGTGGATGGAGCAGAGGGGAAGAAAGGTGATGAG
AGTAGCGAGGTGCGTCATGTTTCCTTCCCAACCATCGAAGACGCAGTTGC
GTTCTCTGCATGGAGTTCTATCTCACATCGACTATCTCACCCACTATTTC
TTGCATTGTGTGTTCTTGATGACAGTATTAGGGTGGATGATGACGTGGAA
GGCCGATATCATGAGGAACGAGTGCGGGAAAAGCTTTGTGCCAAAGGCTG
TGATGATGCTTGGCATGACTCTACCATATCCTTTCTTTCTGAACTTCTTC
CAGTATGGTCCACTGTAGACTATGCAGCAGCTGCCATTGCTGGTGGAGAA
ATTGCTCTTGACCTCATTCGTCTCGTATCACACCGTGGTGAACCTGCATG
CAATTCGCAGGTTGCAAAGAACTTGGCATTGAGCGGGTTTAGTATTACAG
TTGCTGATGAGAGGCCTGCAACCAAAGCACCAGGTTTGGCACTTCTTTCG
GGGCTTCCGTTGACTGATGGTGTATGTGGGGGTGTTGAAGAGGGGTTGAC
TGTTGGAGAAATGGCTGTACGCTCACTATCAGCGTTGAACCCGCTTGCTA
AGATGGCAGCCGTCTCTTTCGAGGACCATAGTGATGAATTTCTAAAGTCC
TTTGACTTGATTGTTGCTTCCCGCATGTCATTGTCAGAGGCTGTTGCGTT
GGGGTCTCGATGTCGGCACCTAGGGGTGAATTTTACTACCATTCGAAGCC
ATGGACCTTTTTCCGTTGTGATACAAGACCATGGATCAGATTTTGCATAT
GTTTTGGATGAAAAACAAGGAGTGGATGGAGCAGAGGGGAAGAAAGGTGA
TGAGAGTAGCGAGGTGCGTCATGTTTCCTTCCCAACCATCGAAGACGCAG
TTGCGTTCTCTGCATGGAGTTCTATCTCACATCGACTATCTCACCCACTA
TTTCTTGCATTGTGTGTTCTTGATGACAGTATTAGGGTGGATGATGACGT
GGAAGGCCGATATCATGAGGAACGAGTGCGGGAAAAGCTTTGTGCCAAAG
GCTGTGATGATGCTTGGCATGACTCTACCATATCCTTTCTTTCTGAACTT
CTTCCAGTATGGTCCACTGTAGACTATGCAGCAGCTGCCATTGCTGGTGG
AGAAATTGCTCTTGACCTCATTCGTCTCGTATCACACCGTGGTGAACCTG
CATGCAAT
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