mRNA_M-pyrifera_M_contig76282.17984.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76282.17984.1
Unique NamemRNA_M-pyrifera_M_contig76282.17984.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig76282.17984.1 vs. uniprot
Match: A0A812UPQ0_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812UPQ0_9DINO)

HSP 1 Score: 53.9 bits (128), Expect = 8.010e-6
Identity = 43/125 (34.40%), Postives = 64/125 (51.20%), Query Frame = 1 
Query:   10 WAKFSASPVLLRALAICCALLSAVLLWCELAQALVLGSTEARHTNVSAIAALLHSLAPQPGATFFCATLFLLYLAGCTYFGLFSVRVFSMVELTGRRQTDSYALFINATVLSRLQFSLAFNFLSL 384
            W     +PV+ R +AI  AL S ++L  EL       S   R   +  IA +  + +P    T     + L Y++   Y  LF +R F M+EL     TD+  L +NA +L RLQF+LAFN+L++
Sbjct:  365 WWHVRLAPVVFRVVAIVAALASVLVLVSELMLPFSANSPS-RINPIGRIAYIDETASP---GTVLAVAVVLAYMSAAMYSALFKLRAFGMLELCPGGNTDATTLLLNAGILCRLQFALAFNYLNM 485
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BLAST of mRNA_M-pyrifera_M_contig76282.17984.1 vs. uniprot
Match: A0A8J5JVR1_HOMAM (LMBR1 domain-containing protein 2-like n=4 Tax=Homarus americanus TaxID=6706 RepID=A0A8J5JVR1_HOMAM)

HSP 1 Score: 53.1 bits (126), Expect = 1.490e-5
Identity = 43/119 (36.13%), Postives = 64/119 (53.78%), Query Frame = 1 
Query:   37 LLRALAICCALLSAVLLWCELAQALVLGSTEARHTNVSAIAALLHSLAPQPGATF---FCATLFLLYLAGCTYFGLFSVRVFSMVELTGRRQTDSYALFINATVLSRLQFSLAFNFLSL 384
            LLRALA+CCAL+S V++W EL       +  + +  +S  A  ++ LA      F     ++L + Y+A C Y  LF +RV ++  L    QTD Y+L  +  +L RL   +  NFLSL
Sbjct:  400 LLRALAVCCALVSVVVVWSEL-------TFFSTNPTISLFAVFVN-LAKANYDYFTIEMISSLSMAYIALCAYSTLFKIRVLNLYYLAPHHQTDEYSLIFSGMMLCRLTPPMCLNFLSL 510
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76282.17984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A812UPQ0_9DINO8.010e-634.40Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A8J5JVR1_HOMAM1.490e-536.13LMBR1 domain-containing protein 2-like n=4 Tax=Hom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76282contigM-pyrifera_M_contig76282:47..430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size384
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816661.9767401-CDS-M-pyrifera_M_contig76282:46..4301622816661.9767401-CDS-M-pyrifera_M_contig76282:46..430Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76282 47..430 -
1692278105.02027-CDS-M-pyrifera_M_contig76282:46..4301692278105.02027-CDS-M-pyrifera_M_contig76282:46..430Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76282 47..430 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76282.17984.1prot_M-pyrifera_M_contig76282.17984.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76282 47..430 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76282.17984.1

>prot_M-pyrifera_M_contig76282.17984.1 ID=prot_M-pyrifera_M_contig76282.17984.1|Name=mRNA_M-pyrifera_M_contig76282.17984.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=128bp
VAKWAKFSASPVLLRALAICCALLSAVLLWCELAQALVLGSTEARHTNVS
AIAALLHSLAPQPGATFFCATLFLLYLAGCTYFGLFSVRVFSMVELTGRR
QTDSYALFINATVLSRLQFSLAFNFLSL
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mRNA from alignment at M-pyrifera_M_contig76282:47..430-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76282.17984.1 ID=mRNA_M-pyrifera_M_contig76282.17984.1|Name=mRNA_M-pyrifera_M_contig76282.17984.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig76282:47..430- (Macrocystis pyrifera P11B4 male)
GTGGCGAAATGGGCGAAATTCTCGGCCTCTCCTGTGCTCCTCCGTGCCCT
CGCCATTTGCTGTGCTCTCCTCTCCGCAGTCCTCCTCTGGTGTGAGCTGG
CTCAAGCACTCGTGCTGGGATCCACAGAAGCAAGACACACCAACGTGAGT
GCTATCGCTGCTCTCCTCCACTCCCTCGCCCCACAACCAGGCGCCACATT
CTTCTGCGCCACCCTCTTCCTCCTCTACCTCGCCGGCTGCACCTACTTCG
GCCTCTTCTCCGTCAGAGTCTTCAGCATGGTCGAGCTCACGGGAAGGAGG
CAGACGGATTCCTACGCGCTCTTCATCAACGCCACCGTCCTCTCCAGACT
CCAATTCTCGCTCGCCTTCAACTTCCTCTCCCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76282:47..430-

>mRNA_M-pyrifera_M_contig76282.17984.1 ID=mRNA_M-pyrifera_M_contig76282.17984.1|Name=mRNA_M-pyrifera_M_contig76282.17984.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig76282:47..430- (Macrocystis pyrifera P11B4 male)
GTGGCGAAATGGGCGAAATTCTCGGCCTCTCCTGTGCTCCTCCGTGCCCT
CGCCATTTGCTGTGCTCTCCTCTCCGCAGTCCTCCTCTGGTGTGAGCTGG
CTCAAGCACTCGTGCTGGGATCCACAGAAGCAAGACACACCAACGTGAGT
GCTATCGCTGCTCTCCTCCACTCCCTCGCCCCACAACCAGGCGCCACATT
CTTCTGCGCCACCCTCTTCCTCCTCTACCTCGCCGGCTGCACCTACTTCG
GCCTCTTCTCCGTCAGAGTCTTCAGCATGGTCGAGCTCACGGGAAGGAGG
CAGACGGATTCCTACGCGCTCTTCATCAACGCCACCGTCCTCTCCAGACT
CCAATTCTCGCTCGCCTTCAACTTCCTCTCCCTCGTGGCGAAATGGGCGA
AATTCTCGGCCTCTCCTGTGCTCCTCCGTGCCCTCGCCATTTGCTGTGCT
CTCCTCTCCGCAGTCCTCCTCTGGTGTGAGCTGGCTCAAGCACTCGTGCT
GGGATCCACAGAAGCAAGACACACCAACGTGAGTGCTATCGCTGCTCTCC
TCCACTCCCTCGCCCCACAACCAGGCGCCACATTCTTCTGCGCCACCCTC
TTCCTCCTCTACCTCGCCGGCTGCACCTACTTCGGCCTCTTCTCCGTCAG
AGTCTTCAGCATGGTCGAGCTCACGGGAAGGAGGCAGACGGATTCCTACG
CGCTCTTCATCAACGCCACCGTCCTCTCCAGACTCCAATTCTCGCTCGCC
TTCAACTTCCTCTCCCTC
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