prot_M-pyrifera_M_contig76282.17984.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig76282.17984.1
Unique Nameprot_M-pyrifera_M_contig76282.17984.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length128
Homology
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BLAST of mRNA_M-pyrifera_M_contig76282.17984.1 vs. uniprot
Match: A0A812UPQ0_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812UPQ0_9DINO)

HSP 1 Score: 53.9 bits (128), Expect = 8.010e-6
Identity = 43/125 (34.40%), Postives = 64/125 (51.20%), Query Frame = 0 
Query:    4 WAKFSASPVLLRALAICCALLSAVLLWCELAQALVLGSTEARHTNVSAIAALLHSLAPQPGATFFCATLFLLYLAGCTYFGLFSVRVFSMVELTGRRQTDSYALFINATVLSRLQFSLAFNFLSL 128
            W     +PV+ R +AI  AL S ++L  EL       S   R   +  IA +  + +P    T     + L Y++   Y  LF +R F M+EL     TD+  L +NA +L RLQF+LAFN+L++
Sbjct:  365 WWHVRLAPVVFRVVAIVAALASVLVLVSELMLPFSANSPS-RINPIGRIAYIDETASP---GTVLAVAVVLAYMSAAMYSALFKLRAFGMLELCPGGNTDATTLLLNAGILCRLQFALAFNYLNM 485
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BLAST of mRNA_M-pyrifera_M_contig76282.17984.1 vs. uniprot
Match: A0A8J5JVR1_HOMAM (LMBR1 domain-containing protein 2-like n=4 Tax=Homarus americanus TaxID=6706 RepID=A0A8J5JVR1_HOMAM)

HSP 1 Score: 53.1 bits (126), Expect = 1.490e-5
Identity = 43/119 (36.13%), Postives = 64/119 (53.78%), Query Frame = 0 
Query:   13 LLRALAICCALLSAVLLWCELAQALVLGSTEARHTNVSAIAALLHSLAPQPGATF---FCATLFLLYLAGCTYFGLFSVRVFSMVELTGRRQTDSYALFINATVLSRLQFSLAFNFLSL 128
            LLRALA+CCAL+S V++W EL       +  + +  +S  A  ++ LA      F     ++L + Y+A C Y  LF +RV ++  L    QTD Y+L  +  +L RL   +  NFLSL
Sbjct:  400 LLRALAVCCALVSVVVVWSEL-------TFFSTNPTISLFAVFVN-LAKANYDYFTIEMISSLSMAYIALCAYSTLFKIRVLNLYYLAPHHQTDEYSLIFSGMMLCRLTPPMCLNFLSL 510
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76282.17984.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A812UPQ0_9DINO8.010e-634.40Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A8J5JVR1_HOMAM1.490e-536.13LMBR1 domain-containing protein 2-like n=4 Tax=Hom... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006876LMBR1-like membrane proteinPFAMPF04791LMBR1coord: 9..128
e-value: 2.3E-17
score: 63.1
NoneNo IPR availablePANTHERPTHR21355:SF0LMBR1 DOMAIN-CONTAINING PROTEIN 2coord: 10..128
NoneNo IPR availablePANTHERPTHR21355UNCHARACTERIZEDcoord: 10..128
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..36
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 105..126
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 86..104
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 32..36
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 65..85
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 16..31
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 127..128
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 37..64
NoneNo IPR availableTMHMMTMhelixcoord: 12..34
NoneNo IPR availableTMHMMTMhelixcoord: 64..86
NoneNo IPR availableTMHMMTMhelixcoord: 107..126

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76282contigM-pyrifera_M_contig76282:47..430 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76282.17984.1mRNA_M-pyrifera_M_contig76282.17984.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig76282 47..430 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig76282.17984.1 ID=prot_M-pyrifera_M_contig76282.17984.1|Name=mRNA_M-pyrifera_M_contig76282.17984.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=128bp
VAKWAKFSASPVLLRALAICCALLSAVLLWCELAQALVLGSTEARHTNVS
AIAALLHSLAPQPGATFFCATLFLLYLAGCTYFGLFSVRVFSMVELTGRR
QTDSYALFINATVLSRLQFSLAFNFLSL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006876LMBR1-like_membr_prot