mRNA_M-pyrifera_M_contig76105.17952.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76105.17952.1
Unique NamemRNA_M-pyrifera_M_contig76105.17952.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig76105.17952.1 vs. uniprot
Match: UPI00092FBCE9 (E3 ISG15--protein ligase HERC5-like isoform X1 n=4 Tax=Longirostres TaxID=1298654 RepID=UPI00092FBCE9)

HSP 1 Score: 85.5 bits (210), Expect = 2.800e-17
Identity = 47/109 (43.12%), Postives = 60/109 (55.05%), Query Frame = 1
Query:    7 SEDGRLFVWGS------GARMSWT----PELVRGFEGLHVSQCALGSVHCVAIAWEGESAAVYGWGNNRLGQLGLGHGKDCHTPTRITALDCHDIVEVDCGFQHSTAVT 303
            S+ G LF WG       GAR   T    P+LV+  +G+ V+Q A G  HC+ ++  G   AVY WG N  GQLGLGH KD   P  ITAL+    V V CG +HS  ++
Sbjct:  170 SKGGELFTWGKNSHGQLGARSQITFPKMPQLVKDLQGIPVAQIAAGGAHCLVLSLSG---AVYSWGKNSFGQLGLGHTKDMALPQYITALEHKKTVFVSCGGEHSAVLS 275          
BLAST of mRNA_M-pyrifera_M_contig76105.17952.1 vs. uniprot
Match: A0A151NMV5_ALLMI (E3 ISG15--protein ligase HERC5 isoform C n=3 Tax=Alligator mississippiensis TaxID=8496 RepID=A0A151NMV5_ALLMI)

HSP 1 Score: 84.7 bits (208), Expect = 5.330e-17
Identity = 45/109 (41.28%), Postives = 63/109 (57.80%), Query Frame = 1
Query:    7 SEDGRLFVWGS--------GARMSWT--PELVRGFEGLHVSQCALGSVHCVAIAWEGESAAVYGWGNNRLGQLGLGHGKDCHTPTRITALDCHDIVEVDCGFQHSTAVT 303
            S+ G LF WG         G+++++T  P+LV+  +G+ V+Q A G  HC+ ++  G   AVY WG N  GQLGLGH KD   P  ITAL+    V V CG +HS  ++
Sbjct: 1125 SKGGELFTWGKNSHGQLGVGSQITFTKMPQLVKDLQGIPVAQIAAGGAHCLVLSLSG---AVYSWGKNSFGQLGLGHTKDVAFPEYITALEHKKTVFVSCGGEHSAILS 1230          
BLAST of mRNA_M-pyrifera_M_contig76105.17952.1 vs. uniprot
Match: A0A3Q0G4M9_ALLSI (E3 ISG15--protein ligase HERC5-like isoform X1 n=4 Tax=Alligator TaxID=8495 RepID=A0A3Q0G4M9_ALLSI)

HSP 1 Score: 82.8 bits (203), Expect = 2.460e-16
Identity = 44/109 (40.37%), Postives = 63/109 (57.80%), Query Frame = 1
Query:    7 SEDGRLFVWGS--------GARMSWT--PELVRGFEGLHVSQCALGSVHCVAIAWEGESAAVYGWGNNRLGQLGLGHGKDCHTPTRITALDCHDIVEVDCGFQHSTAVT 303
            S+ G LF WG         G+++++T  P+LV+  +G+ V+Q A G  HC+ ++  G   AVY WG N  GQLGLG+ KD   P  ITAL+    V V CG +HS  ++
Sbjct:  171 SKGGELFTWGKNSHGQLGVGSQITFTKMPQLVKDLQGIPVAQIAAGGAHCLVLSLSG---AVYSWGKNSFGQLGLGYTKDVAFPEYITALEHKKTVFVSCGGEHSAVLS 276          
BLAST of mRNA_M-pyrifera_M_contig76105.17952.1 vs. uniprot
Match: R0LLU2_ANAPL (Putative E3 ubiquitin-protein ligase HERC5 (Fragment) n=1 Tax=Anas platyrhynchos TaxID=8839 RepID=R0LLU2_ANAPL)

HSP 1 Score: 79.7 bits (195), Expect = 3.770e-16
Identity = 41/106 (38.68%), Postives = 58/106 (54.72%), Query Frame = 1
Query:   16 GRLFVWGSGAR----------MSWTPELVRGFEGLHVSQCALGSVHCVAIAWEGESAAVYGWGNNRLGQLGLGHGKDCHTPTRITALDCHDIVEVDCGFQHSTAVT 303
            G LF WG   R          ++ TP+LV+G +G+ ++Q A G  H VA++  G   AVY WG N  GQLGLGH +D   P+ I AL+    V + CG  H+  ++
Sbjct:    2 GELFTWGQNTRGQLGVGRQVTLTSTPQLVKGLKGIPLAQIAAGGAHSVAVSLSG---AVYSWGKNDFGQLGLGHTEDKDYPSYIEALEHWKTVFISCGADHTAVLS 104          
BLAST of mRNA_M-pyrifera_M_contig76105.17952.1 vs. uniprot
Match: A0A093HEJ7_STRCA (E3 ISG15--protein ligase HERC5 (Fragment) n=1 Tax=Struthio camelus australis TaxID=441894 RepID=A0A093HEJ7_STRCA)

HSP 1 Score: 80.1 bits (196), Expect = 8.390e-16
Identity = 43/108 (39.81%), Postives = 61/108 (56.48%), Query Frame = 1
Query:   10 EDGRLFVWGS--------GARMSWTPE--LVRGFEGLHVSQCALGSVHCVAIAWEGESAAVYGWGNNRLGQLGLGHGKDCHTPTRITALDCHDIVEVDCGFQHSTAVT 303
            E+G LF WG         GA+++ TPE  LV G +G+ ++Q A G  H +A++  G   AVY WG N  GQLGLGH +D   P+ I AL+    V + CG  H+  ++
Sbjct:    1 EEGELFAWGQNTHGQLGVGAQVAHTPEPQLVEGLKGIALAQIAAGGAHSLAVSLSG---AVYSWGKNDFGQLGLGHTEDRDRPSYIRALEHWKTVFISCGADHTAVLS 105          
BLAST of mRNA_M-pyrifera_M_contig76105.17952.1 vs. uniprot
Match: A0A7K7V563_EUDEL (HERC5 ligase (Fragment) n=1 Tax=Eudromia elegans TaxID=8805 RepID=A0A7K7V563_EUDEL)

HSP 1 Score: 78.6 bits (192), Expect = 8.420e-16
Identity = 42/110 (38.18%), Postives = 57/110 (51.82%), Query Frame = 1
Query:    4 PSEDGRLFVWGSGAR----------MSWTPELVRGFEGLHVSQCALGSVHCVAIAWEGESAAVYGWGNNRLGQLGLGHGKDCHTPTRITALDCHDIVEVDCGFQHSTAVT 303
            P E G LF WG  A            +  P+LV G  G+ ++Q A G+ H +A++    S AVY WG N  GQLGLGH +D   P+ ITAL     V + CG  H+  ++
Sbjct:    2 PREGGELFAWGQNAHGQLGVGRQLCSARDPQLVEGLRGVALAQLAAGAAHSLAVS---VSGAVYSWGKNASGQLGLGHTEDRDCPSYITALQHWKTVFISCGEDHTAVLS 108          
BLAST of mRNA_M-pyrifera_M_contig76105.17952.1 vs. uniprot
Match: A0A7K9UZV2_ANSSE (HERC5 ligase (Fragment) n=1 Tax=Anseranas semipalmata TaxID=8851 RepID=A0A7K9UZV2_ANSSE)

HSP 1 Score: 80.1 bits (196), Expect = 9.560e-16
Identity = 41/108 (37.96%), Postives = 58/108 (53.70%), Query Frame = 1
Query:   10 EDGRLFVWGSGAR----------MSWTPELVRGFEGLHVSQCALGSVHCVAIAWEGESAAVYGWGNNRLGQLGLGHGKDCHTPTRITALDCHDIVEVDCGFQHSTAVT 303
            E+G LF WG  A           ++  P LV+G +G+ ++Q A G  H VA++  G   AVY WG N  GQLGLGH +D   P+ I AL+    V + CG  H+  ++
Sbjct:    4 EEGELFAWGQNAHGQLGVGSQVTLAHIPRLVQGLKGIPLAQIAAGGAHSVAVSLSG---AVYSWGKNNFGQLGLGHTEDKDCPSYIEALEHWKTVFISCGADHTAVLS 108          
BLAST of mRNA_M-pyrifera_M_contig76105.17952.1 vs. uniprot
Match: UPI002015453F (E3 ISG15--protein ligase HERC5-like isoform X1 n=5 Tax=Alosa TaxID=34772 RepID=UPI002015453F)

HSP 1 Score: 80.5 bits (197), Expect = 1.600e-15
Identity = 40/109 (36.70%), Postives = 60/109 (55.05%), Query Frame = 1
Query:    7 SEDGRLFVWGS----------GARMSWTPELVRGFEGLHVSQCALGSVHCVAIAWEGESAAVYGWGNNRLGQLGLGHGKDCHTPTRITALDCHDIVEVDCGFQHSTAVT 303
            +EDG++F WG           G   + +P+ ++   G+ +SQ + G  H  A++  G   AV+GWG N  GQLGLG+  DC  P +ITAL+   IV + CG  H+  +T
Sbjct:  177 TEDGQVFTWGQNSNGQLGLGKGEPSTMSPQPLKSLAGIPLSQISAGGDHSFALSLSG---AVFGWGKNSAGQLGLGNNIDCPEPVQITALNMKKIVHISCGEDHTAVLT 282          
BLAST of mRNA_M-pyrifera_M_contig76105.17952.1 vs. uniprot
Match: U3IWC6_ANAPP (HECT domain-containing protein n=5 Tax=Anatidae TaxID=8830 RepID=U3IWC6_ANAPP)

HSP 1 Score: 79.7 bits (195), Expect = 2.970e-15
Identity = 41/106 (38.68%), Postives = 58/106 (54.72%), Query Frame = 1
Query:   16 GRLFVWGSGAR----------MSWTPELVRGFEGLHVSQCALGSVHCVAIAWEGESAAVYGWGNNRLGQLGLGHGKDCHTPTRITALDCHDIVEVDCGFQHSTAVT 303
            G LF WG   R          ++ TP+LV+G +G+ ++Q A G  H VA++  G   AVY WG N  GQLGLGH +D   P+ I AL+    V + CG  H+  ++
Sbjct:  103 GELFTWGQNTRGQLGVGRQVTLTSTPQLVKGLKGIPLAQIAAGGAHSVAVSLSG---AVYSWGKNDFGQLGLGHTEDKDYPSYIEALEHWKTVFISCGADHTAVLS 205          
BLAST of mRNA_M-pyrifera_M_contig76105.17952.1 vs. uniprot
Match: UPI001B7DFF29 (probable E3 ubiquitin-protein ligase HERC3 n=1 Tax=Carcharodon carcharias TaxID=13397 RepID=UPI001B7DFF29)

HSP 1 Score: 75.1 bits (183), Expect = 3.150e-14
Identity = 40/106 (37.74%), Postives = 55/106 (51.89%), Query Frame = 1
Query:   16 GRLFVWGS--GARMSW--------TPELVRGFEGLHVSQCALGSVHCVAIAWEGESAAVYGWGNNRLGQLGLGHGKDCHTPTRITALDCHDIVEVDCGFQHSTAVT 303
            G++F WG   G ++           P+ V    G+ V+Q A G  H  A++    S AV+GWG N  GQLGLG  K  H PT +  L+C  IV + CG QH+  +T
Sbjct:  138 GQVFAWGQNVGDQLGLGRAGHHVLRPQCVVALTGIPVAQIAAGGTHSFALS---HSGAVFGWGRNNCGQLGLGDTKTRHLPTYVKQLECKKIVYISCGAQHTALLT 240          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76105.17952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00092FBCE92.800e-1743.12E3 ISG15--protein ligase HERC5-like isoform X1 n=4... [more]
A0A151NMV5_ALLMI5.330e-1741.28E3 ISG15--protein ligase HERC5 isoform C n=3 Tax=A... [more]
A0A3Q0G4M9_ALLSI2.460e-1640.37E3 ISG15--protein ligase HERC5-like isoform X1 n=4... [more]
R0LLU2_ANAPL3.770e-1638.68Putative E3 ubiquitin-protein ligase HERC5 (Fragme... [more]
A0A093HEJ7_STRCA8.390e-1639.81E3 ISG15--protein ligase HERC5 (Fragment) n=1 Tax=... [more]
A0A7K7V563_EUDEL8.420e-1638.18HERC5 ligase (Fragment) n=1 Tax=Eudromia elegans T... [more]
A0A7K9UZV2_ANSSE9.560e-1637.96HERC5 ligase (Fragment) n=1 Tax=Anseranas semipalm... [more]
UPI002015453F1.600e-1536.70E3 ISG15--protein ligase HERC5-like isoform X1 n=5... [more]
U3IWC6_ANAPP2.970e-1538.68HECT domain-containing protein n=5 Tax=Anatidae Ta... [more]
UPI001B7DFF293.150e-1437.74probable E3 ubiquitin-protein ligase HERC3 n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76105contigM-pyrifera_M_contig76105:197..499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score76.6
Seed ortholog evalue7.2e-12
Seed eggNOG ortholog7897.ENSLACP00000001182
KEGG koko:K10614,ko:K10615
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0000209,GO:0002682,GO:0002684,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010646,GO:0010647,GO:0010648,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019941,GO:0023051,GO:0023056,GO:0023057,GO:0030163,GO:0031347,GO:0031349,GO:0032446,GO:0032879,GO:0032880,GO:0034121,GO:0034123,GO:0034124,GO:0034126,GO:0035330,GO:0035331,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0045088,GO:0045089,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0051603,GO:0051865,GO:0060341,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0071704,GO:0080134,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902531,GO:1902532,GO:1903076,GO:1903078,GO:1903827,GO:1903829,GO:1904375,GO:1904377,GO:1905475,GO:1905477
EggNOG free text desc.ubiquitin-like protein ligase activity
EggNOG OGs38BET@33154,3BB1I@33208,3CRW4@33213,481J0@7711,48VPC@7742,COG5021@1,KOG0941@2759
EC2.3.2.26
COG Functional cat.O
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons1
Model size303
Cds size303
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816660.4235458-CDS-M-pyrifera_M_contig76105:196..4991622816660.4235458-CDS-M-pyrifera_M_contig76105:196..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76105 197..499 -
1692278104.2197304-CDS-M-pyrifera_M_contig76105:196..4991692278104.2197304-CDS-M-pyrifera_M_contig76105:196..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76105 197..499 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76105.17952.1prot_M-pyrifera_M_contig76105.17952.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76105 197..499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76105.17952.1

>prot_M-pyrifera_M_contig76105.17952.1 ID=prot_M-pyrifera_M_contig76105.17952.1|Name=mRNA_M-pyrifera_M_contig76105.17952.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=101bp
MPSEDGRLFVWGSGARMSWTPELVRGFEGLHVSQCALGSVHCVAIAWEGE
SAAVYGWGNNRLGQLGLGHGKDCHTPTRITALDCHDIVEVDCGFQHSTAV
T
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mRNA from alignment at M-pyrifera_M_contig76105:197..499-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76105.17952.1 ID=mRNA_M-pyrifera_M_contig76105.17952.1|Name=mRNA_M-pyrifera_M_contig76105.17952.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=303bp|location=Sequence derived from alignment at M-pyrifera_M_contig76105:197..499- (Macrocystis pyrifera P11B4 male)
ATGCCATCAGAGGACGGTCGACTGTTCGTCTGGGGCTCTGGCGCACGAAT GTCGTGGACTCCTGAGTTGGTGAGGGGATTCGAGGGCCTCCACGTCTCCC AGTGTGCACTGGGCAGTGTCCATTGCGTTGCCATTGCCTGGGAAGGAGAG AGTGCGGCGGTGTACGGCTGGGGCAACAACCGCCTCGGCCAACTGGGCCT GGGCCACGGCAAGGACTGCCACACACCCACAAGGATCACAGCTCTGGACT GCCATGATATCGTGGAAGTCGACTGTGGATTTCAGCACTCCACCGCTGTC ACA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76105:197..499-

>mRNA_M-pyrifera_M_contig76105.17952.1 ID=mRNA_M-pyrifera_M_contig76105.17952.1|Name=mRNA_M-pyrifera_M_contig76105.17952.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig76105:197..499- (Macrocystis pyrifera P11B4 male)
ATGCCATCAGAGGACGGTCGACTGTTCGTCTGGGGCTCTGGCGCACGAAT
GTCGTGGACTCCTGAGTTGGTGAGGGGATTCGAGGGCCTCCACGTCTCCC
AGTGTGCACTGGGCAGTGTCCATTGCGTTGCCATTGCCTGGGAAGGAGAG
AGTGCGGCGGTGTACGGCTGGGGCAACAACCGCCTCGGCCAACTGGGCCT
GGGCCACGGCAAGGACTGCCACACACCCACAAGGATCACAGCTCTGGACT
GCCATGATATCGTGGAAGTCGACTGTGGATTTCAGCACTCCACCGCTGTC
ACAATGCCATCAGAGGACGGTCGACTGTTCGTCTGGGGCTCTGGCGCACG
AATGTCGTGGACTCCTGAGTTGGTGAGGGGATTCGAGGGCCTCCACGTCT
CCCAGTGTGCACTGGGCAGTGTCCATTGCGTTGCCATTGCCTGGGAAGGA
GAGAGTGCGGCGGTGTACGGCTGGGGCAACAACCGCCTCGGCCAACTGGG
CCTGGGCCACGGCAAGGACTGCCACACACCCACAAGGATCACAGCTCTGG
ACTGCCATGATATCGTGGAAGTCGACTGTGGATTTCAGCACTCCACCGCT
GTCACA
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