mRNA_M-pyrifera_M_contig76105.17952.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig76105.17952.1 vs. uniprot
Match: UPI00092FBCE9 (E3 ISG15--protein ligase HERC5-like isoform X1 n=4 Tax=Longirostres TaxID=1298654 RepID=UPI00092FBCE9) HSP 1 Score: 85.5 bits (210), Expect = 2.800e-17 Identity = 47/109 (43.12%), Postives = 60/109 (55.05%), Query Frame = 1 Query: 7 SEDGRLFVWGS------GARMSWT----PELVRGFEGLHVSQCALGSVHCVAIAWEGESAAVYGWGNNRLGQLGLGHGKDCHTPTRITALDCHDIVEVDCGFQHSTAVT 303 S+ G LF WG GAR T P+LV+ +G+ V+Q A G HC+ ++ G AVY WG N GQLGLGH KD P ITAL+ V V CG +HS ++ Sbjct: 170 SKGGELFTWGKNSHGQLGARSQITFPKMPQLVKDLQGIPVAQIAAGGAHCLVLSLSG---AVYSWGKNSFGQLGLGHTKDMALPQYITALEHKKTVFVSCGGEHSAVLS 275
BLAST of mRNA_M-pyrifera_M_contig76105.17952.1 vs. uniprot
Match: A0A151NMV5_ALLMI (E3 ISG15--protein ligase HERC5 isoform C n=3 Tax=Alligator mississippiensis TaxID=8496 RepID=A0A151NMV5_ALLMI) HSP 1 Score: 84.7 bits (208), Expect = 5.330e-17 Identity = 45/109 (41.28%), Postives = 63/109 (57.80%), Query Frame = 1 Query: 7 SEDGRLFVWGS--------GARMSWT--PELVRGFEGLHVSQCALGSVHCVAIAWEGESAAVYGWGNNRLGQLGLGHGKDCHTPTRITALDCHDIVEVDCGFQHSTAVT 303 S+ G LF WG G+++++T P+LV+ +G+ V+Q A G HC+ ++ G AVY WG N GQLGLGH KD P ITAL+ V V CG +HS ++ Sbjct: 1125 SKGGELFTWGKNSHGQLGVGSQITFTKMPQLVKDLQGIPVAQIAAGGAHCLVLSLSG---AVYSWGKNSFGQLGLGHTKDVAFPEYITALEHKKTVFVSCGGEHSAILS 1230
BLAST of mRNA_M-pyrifera_M_contig76105.17952.1 vs. uniprot
Match: A0A3Q0G4M9_ALLSI (E3 ISG15--protein ligase HERC5-like isoform X1 n=4 Tax=Alligator TaxID=8495 RepID=A0A3Q0G4M9_ALLSI) HSP 1 Score: 82.8 bits (203), Expect = 2.460e-16 Identity = 44/109 (40.37%), Postives = 63/109 (57.80%), Query Frame = 1 Query: 7 SEDGRLFVWGS--------GARMSWT--PELVRGFEGLHVSQCALGSVHCVAIAWEGESAAVYGWGNNRLGQLGLGHGKDCHTPTRITALDCHDIVEVDCGFQHSTAVT 303 S+ G LF WG G+++++T P+LV+ +G+ V+Q A G HC+ ++ G AVY WG N GQLGLG+ KD P ITAL+ V V CG +HS ++ Sbjct: 171 SKGGELFTWGKNSHGQLGVGSQITFTKMPQLVKDLQGIPVAQIAAGGAHCLVLSLSG---AVYSWGKNSFGQLGLGYTKDVAFPEYITALEHKKTVFVSCGGEHSAVLS 276
BLAST of mRNA_M-pyrifera_M_contig76105.17952.1 vs. uniprot
Match: R0LLU2_ANAPL (Putative E3 ubiquitin-protein ligase HERC5 (Fragment) n=1 Tax=Anas platyrhynchos TaxID=8839 RepID=R0LLU2_ANAPL) HSP 1 Score: 79.7 bits (195), Expect = 3.770e-16 Identity = 41/106 (38.68%), Postives = 58/106 (54.72%), Query Frame = 1 Query: 16 GRLFVWGSGAR----------MSWTPELVRGFEGLHVSQCALGSVHCVAIAWEGESAAVYGWGNNRLGQLGLGHGKDCHTPTRITALDCHDIVEVDCGFQHSTAVT 303 G LF WG R ++ TP+LV+G +G+ ++Q A G H VA++ G AVY WG N GQLGLGH +D P+ I AL+ V + CG H+ ++ Sbjct: 2 GELFTWGQNTRGQLGVGRQVTLTSTPQLVKGLKGIPLAQIAAGGAHSVAVSLSG---AVYSWGKNDFGQLGLGHTEDKDYPSYIEALEHWKTVFISCGADHTAVLS 104
BLAST of mRNA_M-pyrifera_M_contig76105.17952.1 vs. uniprot
Match: A0A093HEJ7_STRCA (E3 ISG15--protein ligase HERC5 (Fragment) n=1 Tax=Struthio camelus australis TaxID=441894 RepID=A0A093HEJ7_STRCA) HSP 1 Score: 80.1 bits (196), Expect = 8.390e-16 Identity = 43/108 (39.81%), Postives = 61/108 (56.48%), Query Frame = 1 Query: 10 EDGRLFVWGS--------GARMSWTPE--LVRGFEGLHVSQCALGSVHCVAIAWEGESAAVYGWGNNRLGQLGLGHGKDCHTPTRITALDCHDIVEVDCGFQHSTAVT 303 E+G LF WG GA+++ TPE LV G +G+ ++Q A G H +A++ G AVY WG N GQLGLGH +D P+ I AL+ V + CG H+ ++ Sbjct: 1 EEGELFAWGQNTHGQLGVGAQVAHTPEPQLVEGLKGIALAQIAAGGAHSLAVSLSG---AVYSWGKNDFGQLGLGHTEDRDRPSYIRALEHWKTVFISCGADHTAVLS 105
BLAST of mRNA_M-pyrifera_M_contig76105.17952.1 vs. uniprot
Match: A0A7K7V563_EUDEL (HERC5 ligase (Fragment) n=1 Tax=Eudromia elegans TaxID=8805 RepID=A0A7K7V563_EUDEL) HSP 1 Score: 78.6 bits (192), Expect = 8.420e-16 Identity = 42/110 (38.18%), Postives = 57/110 (51.82%), Query Frame = 1 Query: 4 PSEDGRLFVWGSGAR----------MSWTPELVRGFEGLHVSQCALGSVHCVAIAWEGESAAVYGWGNNRLGQLGLGHGKDCHTPTRITALDCHDIVEVDCGFQHSTAVT 303 P E G LF WG A + P+LV G G+ ++Q A G+ H +A++ S AVY WG N GQLGLGH +D P+ ITAL V + CG H+ ++ Sbjct: 2 PREGGELFAWGQNAHGQLGVGRQLCSARDPQLVEGLRGVALAQLAAGAAHSLAVS---VSGAVYSWGKNASGQLGLGHTEDRDCPSYITALQHWKTVFISCGEDHTAVLS 108
BLAST of mRNA_M-pyrifera_M_contig76105.17952.1 vs. uniprot
Match: A0A7K9UZV2_ANSSE (HERC5 ligase (Fragment) n=1 Tax=Anseranas semipalmata TaxID=8851 RepID=A0A7K9UZV2_ANSSE) HSP 1 Score: 80.1 bits (196), Expect = 9.560e-16 Identity = 41/108 (37.96%), Postives = 58/108 (53.70%), Query Frame = 1 Query: 10 EDGRLFVWGSGAR----------MSWTPELVRGFEGLHVSQCALGSVHCVAIAWEGESAAVYGWGNNRLGQLGLGHGKDCHTPTRITALDCHDIVEVDCGFQHSTAVT 303 E+G LF WG A ++ P LV+G +G+ ++Q A G H VA++ G AVY WG N GQLGLGH +D P+ I AL+ V + CG H+ ++ Sbjct: 4 EEGELFAWGQNAHGQLGVGSQVTLAHIPRLVQGLKGIPLAQIAAGGAHSVAVSLSG---AVYSWGKNNFGQLGLGHTEDKDCPSYIEALEHWKTVFISCGADHTAVLS 108
BLAST of mRNA_M-pyrifera_M_contig76105.17952.1 vs. uniprot
Match: UPI002015453F (E3 ISG15--protein ligase HERC5-like isoform X1 n=5 Tax=Alosa TaxID=34772 RepID=UPI002015453F) HSP 1 Score: 80.5 bits (197), Expect = 1.600e-15 Identity = 40/109 (36.70%), Postives = 60/109 (55.05%), Query Frame = 1 Query: 7 SEDGRLFVWGS----------GARMSWTPELVRGFEGLHVSQCALGSVHCVAIAWEGESAAVYGWGNNRLGQLGLGHGKDCHTPTRITALDCHDIVEVDCGFQHSTAVT 303 +EDG++F WG G + +P+ ++ G+ +SQ + G H A++ G AV+GWG N GQLGLG+ DC P +ITAL+ IV + CG H+ +T Sbjct: 177 TEDGQVFTWGQNSNGQLGLGKGEPSTMSPQPLKSLAGIPLSQISAGGDHSFALSLSG---AVFGWGKNSAGQLGLGNNIDCPEPVQITALNMKKIVHISCGEDHTAVLT 282
BLAST of mRNA_M-pyrifera_M_contig76105.17952.1 vs. uniprot
Match: U3IWC6_ANAPP (HECT domain-containing protein n=5 Tax=Anatidae TaxID=8830 RepID=U3IWC6_ANAPP) HSP 1 Score: 79.7 bits (195), Expect = 2.970e-15 Identity = 41/106 (38.68%), Postives = 58/106 (54.72%), Query Frame = 1 Query: 16 GRLFVWGSGAR----------MSWTPELVRGFEGLHVSQCALGSVHCVAIAWEGESAAVYGWGNNRLGQLGLGHGKDCHTPTRITALDCHDIVEVDCGFQHSTAVT 303 G LF WG R ++ TP+LV+G +G+ ++Q A G H VA++ G AVY WG N GQLGLGH +D P+ I AL+ V + CG H+ ++ Sbjct: 103 GELFTWGQNTRGQLGVGRQVTLTSTPQLVKGLKGIPLAQIAAGGAHSVAVSLSG---AVYSWGKNDFGQLGLGHTEDKDYPSYIEALEHWKTVFISCGADHTAVLS 205
BLAST of mRNA_M-pyrifera_M_contig76105.17952.1 vs. uniprot
Match: UPI001B7DFF29 (probable E3 ubiquitin-protein ligase HERC3 n=1 Tax=Carcharodon carcharias TaxID=13397 RepID=UPI001B7DFF29) HSP 1 Score: 75.1 bits (183), Expect = 3.150e-14 Identity = 40/106 (37.74%), Postives = 55/106 (51.89%), Query Frame = 1 Query: 16 GRLFVWGS--GARMSW--------TPELVRGFEGLHVSQCALGSVHCVAIAWEGESAAVYGWGNNRLGQLGLGHGKDCHTPTRITALDCHDIVEVDCGFQHSTAVT 303 G++F WG G ++ P+ V G+ V+Q A G H A++ S AV+GWG N GQLGLG K H PT + L+C IV + CG QH+ +T Sbjct: 138 GQVFAWGQNVGDQLGLGRAGHHVLRPQCVVALTGIPVAQIAAGGTHSFALS---HSGAVFGWGRNNCGQLGLGDTKTRHLPTYVKQLECKKIVYISCGAQHTALLT 240 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76105.17952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig76105.17952.1 >prot_M-pyrifera_M_contig76105.17952.1 ID=prot_M-pyrifera_M_contig76105.17952.1|Name=mRNA_M-pyrifera_M_contig76105.17952.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=101bp MPSEDGRLFVWGSGARMSWTPELVRGFEGLHVSQCALGSVHCVAIAWEGEback to top mRNA from alignment at M-pyrifera_M_contig76105:197..499- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig76105.17952.1 ID=mRNA_M-pyrifera_M_contig76105.17952.1|Name=mRNA_M-pyrifera_M_contig76105.17952.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=303bp|location=Sequence derived from alignment at M-pyrifera_M_contig76105:197..499- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig76105:197..499- >mRNA_M-pyrifera_M_contig76105.17952.1 ID=mRNA_M-pyrifera_M_contig76105.17952.1|Name=mRNA_M-pyrifera_M_contig76105.17952.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig76105:197..499- (Macrocystis pyrifera P11B4 male)back to top |