Homology
BLAST of mRNA_M-pyrifera_M_contig75934.17916.1 vs. uniprot
Match: D7FH00_ECTSI (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH00_ECTSI) HSP 1 Score: 59.7 bits (143), Expect = 4.450e-9 Identity = 30/52 (57.69%), Postives = 36/52 (69.23%), Query Frame = 1 Query: 1 IGLSVTFFSALALVGPNRAFTCALRLWLWSFGFDLAFGALVLKLWHALNAVE 156
+G+ VTF S AL+G TCALRLW +S GFDLAFGAL LK+ A +A E
Sbjct: 176 VGIGVTFLSIFALLGATTDLTCALRLWGYSAGFDLAFGALTLKMRSACSAAE 227
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | signal peptide |
Exons | 1 |
Model size | 156 |
Cds size | 156 |
Stop | 0 |
Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816658.5399697-CDS-M-pyrifera_M_contig75934:664..820 | 1622816658.5399697-CDS-M-pyrifera_M_contig75934:664..820 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig75934 665..820 - |
1692278103.2120645-CDS-M-pyrifera_M_contig75934:664..820 | 1692278103.2120645-CDS-M-pyrifera_M_contig75934:664..820 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig75934 665..820 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig75934.17916.1 >prot_M-pyrifera_M_contig75934.17916.1 ID=prot_M-pyrifera_M_contig75934.17916.1|Name=mRNA_M-pyrifera_M_contig75934.17916.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=52bp
IGLSVTFFSALALVGPNRAFTCALRLWLWSFGFDLAFGALVLKLWHALNA VE back to topmRNA from alignment at M-pyrifera_M_contig75934:665..820- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_M-pyrifera_M_contig75934.17916.1 ID=mRNA_M-pyrifera_M_contig75934.17916.1|Name=mRNA_M-pyrifera_M_contig75934.17916.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=156bp|location=Sequence derived from alignment at M-pyrifera_M_contig75934:665..820- (Macrocystis pyrifera P11B4 male) ATTGGCCTTAGTGTGACGTTTTTCTCGGCGCTTGCCCTCGTCGGGCCGAA
CCGAGCGTTTACCTGCGCCTTGAGGCTGTGGCTCTGGAGTTTTGGGTTCG
ACCTGGCCTTCGGCGCGCTGGTGTTGAAGCTGTGGCACGCGCTCAATGCC
GTCGAG back to topCoding sequence (CDS) from alignment at M-pyrifera_M_contig75934:665..820- >mRNA_M-pyrifera_M_contig75934.17916.1 ID=mRNA_M-pyrifera_M_contig75934.17916.1|Name=mRNA_M-pyrifera_M_contig75934.17916.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig75934:665..820- (Macrocystis pyrifera P11B4 male) ATTGGCCTTAGTGTGACGTTTTTCTCGGCGCTTGCCCTCGTCGGGCCGAA CCGAGCGTTTACCTGCGCCTTGAGGCTGTGGCTCTGGAGTTTTGGGTTCG ACCTGGCCTTCGGCGCGCTGGTGTTGAAGCTGTGGCACGCGCTCAATGCC GTCGAGATTGGCCTTAGTGTGACGTTTTTCTCGGCGCTTGCCCTCGTCGG GCCGAACCGAGCGTTTACCTGCGCCTTGAGGCTGTGGCTCTGGAGTTTTG GGTTCGACCTGGCCTTCGGCGCGCTGGTGTTGAAGCTGTGGCACGCGCTC AATGCCGTCGAG back to top
|