Homology
BLAST of mRNA_M-pyrifera_M_contig75821.17886.1 vs. uniprot
Match: A0A534Q683_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534Q683_9DELT) HSP 1 Score: 48.9 bits (115), Expect = 1.020e-5 Identity = 27/71 (38.03%), Postives = 36/71 (50.70%), Query Frame = 1 Query: 1 PQASGTVRGTLEVGGWILRPEDGTAPLQDAKSTLATYVVISDPGGGIPTFLVERVLAGQMRLGEALAKAIK 213
P G +R + G W + P DG K TLATY +++DPGG IPTF+ + A L E A+ K
Sbjct: 28 PPEDGVIRLKVNTGSWTMEPIDG------GKRTLATYQLLTDPGGSIPTFIANK--ANTKALPELFARVRK 90
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 2 |
Model size | 228 |
Cds size | 228 |
Stop | 0 |
Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816656.8609264-CDS-M-pyrifera_M_contig75821:598..660 | 1622816656.8609264-CDS-M-pyrifera_M_contig75821:598..660 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig75821 599..660 + |
1692278102.2548385-CDS-M-pyrifera_M_contig75821:598..660 | 1692278102.2548385-CDS-M-pyrifera_M_contig75821:598..660 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig75821 599..660 + |
1622816656.8721826-CDS-M-pyrifera_M_contig75821:699..865 | 1622816656.8721826-CDS-M-pyrifera_M_contig75821:699..865 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig75821 700..865 + |
1692278102.271507-CDS-M-pyrifera_M_contig75821:699..865 | 1692278102.271507-CDS-M-pyrifera_M_contig75821:699..865 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig75821 700..865 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig75821.17886.1 >prot_M-pyrifera_M_contig75821.17886.1 ID=prot_M-pyrifera_M_contig75821.17886.1|Name=mRNA_M-pyrifera_M_contig75821.17886.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=76bp
PQASGTVRGTLEVGGWILRPEDGTAPLQDAKSTLATYVVISDPGGGIPTF LVERVLAGQMRLGEALAKAIKTHGPS back to topmRNA from alignment at M-pyrifera_M_contig75821:599..865+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_M-pyrifera_M_contig75821.17886.1 ID=mRNA_M-pyrifera_M_contig75821.17886.1|Name=mRNA_M-pyrifera_M_contig75821.17886.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=267bp|location=Sequence derived from alignment at M-pyrifera_M_contig75821:599..865+ (Macrocystis pyrifera P11B4 male) CCTCAGGCTTCTGGCACTGTGAGGGGTACGTTGGAGGTAGGGGGTTGGAT
TTTGAGGCCAGAGTGGACACAGGATGATGTGAGAGATGTGAGAGATGTGA
GAGATGGCACAGCGCCACTGCAAGATGCGAAATCGACTCTTGCAACATAC
GTCGTGATTTCTGATCCTGGAGGAGGTATTCCTACATTCCTTGTGGAACG
AGTGTTGGCAGGGCAAATGAGACTTGGAGAAGCATTAGCCAAAGCCATCA
AAACACATGGACCATCT back to topCoding sequence (CDS) from alignment at M-pyrifera_M_contig75821:599..865+ >mRNA_M-pyrifera_M_contig75821.17886.1 ID=mRNA_M-pyrifera_M_contig75821.17886.1|Name=mRNA_M-pyrifera_M_contig75821.17886.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig75821:599..865+ (Macrocystis pyrifera P11B4 male) CCTCAGGCTTCTGGCACTGTGAGGGGTACGTTGGAGGTAGGGGGTTGGAT TTTGAGGCCAGACCTCAGGCTTCTGGCACTGTGAGGGGTACGTTGGAGGT AGGGGGTTGGATTTTGAGGCCAGAAGATGGCACAGCGCCACTGCAAGATG CGAAATCGACTCTTGCAACATACGTCGTGATTTCTGATCCTGGAGGAGGT ATTCCTACATTCCTTGTGGAACGAGTGTTGGCAGGGCAAATGAGACTTGG AGAAGCATTAGCCAAAGCCATCAAAACACATGGACCATCTAGATGGCACA GCGCCACTGCAAGATGCGAAATCGACTCTTGCAACATACGTCGTGATTTC TGATCCTGGAGGAGGTATTCCTACATTCCTTGTGGAACGAGTGTTGGCAG GGCAAATGAGACTTGGAGAAGCATTAGCCAAAGCCATCAAAACACATGGA CCATCT back to top
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