mRNA_M-pyrifera_M_contig75821.17886.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75821.17886.1
Unique NamemRNA_M-pyrifera_M_contig75821.17886.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig75821.17886.1 vs. uniprot
Match: A0A534Q683_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534Q683_9DELT)

HSP 1 Score: 48.9 bits (115), Expect = 1.020e-5
Identity = 27/71 (38.03%), Postives = 36/71 (50.70%), Query Frame = 1 
Query:    1 PQASGTVRGTLEVGGWILRPEDGTAPLQDAKSTLATYVVISDPGGGIPTFLVERVLAGQMRLGEALAKAIK 213
            P   G +R  +  G W + P DG       K TLATY +++DPGG IPTF+  +  A    L E  A+  K
Sbjct:   28 PPEDGVIRLKVNTGSWTMEPIDG------GKRTLATYQLLTDPGGSIPTFIANK--ANTKALPELFARVRK 90
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75821.17886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A534Q683_9DELT1.020e-538.03Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75821contigM-pyrifera_M_contig75821:599..865 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816656.8609264-CDS-M-pyrifera_M_contig75821:598..6601622816656.8609264-CDS-M-pyrifera_M_contig75821:598..660Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75821 599..660 +
1692278102.2548385-CDS-M-pyrifera_M_contig75821:598..6601692278102.2548385-CDS-M-pyrifera_M_contig75821:598..660Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75821 599..660 +
1622816656.8721826-CDS-M-pyrifera_M_contig75821:699..8651622816656.8721826-CDS-M-pyrifera_M_contig75821:699..865Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75821 700..865 +
1692278102.271507-CDS-M-pyrifera_M_contig75821:699..8651692278102.271507-CDS-M-pyrifera_M_contig75821:699..865Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75821 700..865 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75821.17886.1prot_M-pyrifera_M_contig75821.17886.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75821 599..865 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75821.17886.1

>prot_M-pyrifera_M_contig75821.17886.1 ID=prot_M-pyrifera_M_contig75821.17886.1|Name=mRNA_M-pyrifera_M_contig75821.17886.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=76bp
PQASGTVRGTLEVGGWILRPEDGTAPLQDAKSTLATYVVISDPGGGIPTF
LVERVLAGQMRLGEALAKAIKTHGPS
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mRNA from alignment at M-pyrifera_M_contig75821:599..865+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75821.17886.1 ID=mRNA_M-pyrifera_M_contig75821.17886.1|Name=mRNA_M-pyrifera_M_contig75821.17886.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=267bp|location=Sequence derived from alignment at M-pyrifera_M_contig75821:599..865+ (Macrocystis pyrifera P11B4 male)
CCTCAGGCTTCTGGCACTGTGAGGGGTACGTTGGAGGTAGGGGGTTGGAT
TTTGAGGCCAGAGTGGACACAGGATGATGTGAGAGATGTGAGAGATGTGA
GAGATGGCACAGCGCCACTGCAAGATGCGAAATCGACTCTTGCAACATAC
GTCGTGATTTCTGATCCTGGAGGAGGTATTCCTACATTCCTTGTGGAACG
AGTGTTGGCAGGGCAAATGAGACTTGGAGAAGCATTAGCCAAAGCCATCA
AAACACATGGACCATCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75821:599..865+

>mRNA_M-pyrifera_M_contig75821.17886.1 ID=mRNA_M-pyrifera_M_contig75821.17886.1|Name=mRNA_M-pyrifera_M_contig75821.17886.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig75821:599..865+ (Macrocystis pyrifera P11B4 male)
CCTCAGGCTTCTGGCACTGTGAGGGGTACGTTGGAGGTAGGGGGTTGGAT
TTTGAGGCCAGACCTCAGGCTTCTGGCACTGTGAGGGGTACGTTGGAGGT
AGGGGGTTGGATTTTGAGGCCAGAAGATGGCACAGCGCCACTGCAAGATG
CGAAATCGACTCTTGCAACATACGTCGTGATTTCTGATCCTGGAGGAGGT
ATTCCTACATTCCTTGTGGAACGAGTGTTGGCAGGGCAAATGAGACTTGG
AGAAGCATTAGCCAAAGCCATCAAAACACATGGACCATCTAGATGGCACA
GCGCCACTGCAAGATGCGAAATCGACTCTTGCAACATACGTCGTGATTTC
TGATCCTGGAGGAGGTATTCCTACATTCCTTGTGGAACGAGTGTTGGCAG
GGCAAATGAGACTTGGAGAAGCATTAGCCAAAGCCATCAAAACACATGGA
CCATCT
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