mRNA_M-pyrifera_M_contig75653.17845.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75653.17845.1
Unique NamemRNA_M-pyrifera_M_contig75653.17845.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig75653.17845.1 vs. uniprot
Match: A0A7I8W1M3_9ANNE (Hypothetical protein n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8W1M3_9ANNE)

HSP 1 Score: 49.7 bits (117), Expect = 2.150e-5
Identity = 26/52 (50.00%), Postives = 32/52 (61.54%), Query Frame = 1 
Query:   22 KRGWGVDEGVFYVGDGRGDLCPAMVLRKGDMVCAREKFPLAEELKRSPPPLE 177
            K   G D+ V YVGDG  DLCPA+ LRK D+VC R  F L + ++   PP E
Sbjct:  166 KTNGGYDK-VMYVGDGYNDLCPALRLRKSDVVCPRIGFSLKKSIENLAPPHE 216
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BLAST of mRNA_M-pyrifera_M_contig75653.17845.1 vs. uniprot
Match: A0A7C9EWX3_OPUST (Uncharacterized protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9EWX3_OPUST)

HSP 1 Score: 47.0 bits (110), Expect = 7.750e-5
Identity = 20/42 (47.62%), Postives = 26/42 (61.90%), Query Frame = 1 
Query:   40 DEGVFYVGDGRGDLCPAMVLRKGDMVCAREKFPLAEELKRSP 165
            D+   Y+GDG GD CP+M LRKGD    R+ FPL   +  +P
Sbjct:   36 DQTFIYLGDGNGDYCPSMKLRKGDYCMPRKNFPLWHVISSNP 77
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75653.17845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7I8W1M3_9ANNE2.150e-550.00Hypothetical protein n=1 Tax=Dimorphilus gyrocilia... [more]
A0A7C9EWX3_OPUST7.750e-547.62Uncharacterized protein (Fragment) n=1 Tax=Opuntia... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75653contigM-pyrifera_M_contig75653:757..951 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816654.4899507-CDS-M-pyrifera_M_contig75653:756..9511622816654.4899507-CDS-M-pyrifera_M_contig75653:756..951Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75653 757..951 -
1692278100.9958572-CDS-M-pyrifera_M_contig75653:756..9511692278100.9958572-CDS-M-pyrifera_M_contig75653:756..951Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75653 757..951 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75653.17845.1prot_M-pyrifera_M_contig75653.17845.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75653 757..951 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75653.17845.1

>prot_M-pyrifera_M_contig75653.17845.1 ID=prot_M-pyrifera_M_contig75653.17845.1|Name=mRNA_M-pyrifera_M_contig75653.17845.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=65bp
DDLVDGRKRGWGVDEGVFYVGDGRGDLCPAMVLRKGDMVCAREKFPLAEE
LKRSPPPLEPSLGVE
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mRNA from alignment at M-pyrifera_M_contig75653:757..951-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75653.17845.1 ID=mRNA_M-pyrifera_M_contig75653.17845.1|Name=mRNA_M-pyrifera_M_contig75653.17845.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=195bp|location=Sequence derived from alignment at M-pyrifera_M_contig75653:757..951- (Macrocystis pyrifera P11B4 male)
GATGATCTCGTCGATGGAAGGAAACGGGGTTGGGGGGTAGATGAGGGAGT
TTTCTATGTTGGTGATGGTAGGGGTGATTTGTGTCCTGCAATGGTGCTCC
GTAAGGGAGATATGGTTTGTGCAAGGGAGAAGTTTCCATTGGCCGAGGAA
CTAAAGCGTTCACCACCTCCTTTGGAGCCAAGCTTGGGGGTTGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75653:757..951-

>mRNA_M-pyrifera_M_contig75653.17845.1 ID=mRNA_M-pyrifera_M_contig75653.17845.1|Name=mRNA_M-pyrifera_M_contig75653.17845.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig75653:757..951- (Macrocystis pyrifera P11B4 male)
GATGATCTCGTCGATGGAAGGAAACGGGGTTGGGGGGTAGATGAGGGAGT
TTTCTATGTTGGTGATGGTAGGGGTGATTTGTGTCCTGCAATGGTGCTCC
GTAAGGGAGATATGGTTTGTGCAAGGGAGAAGTTTCCATTGGCCGAGGAA
CTAAAGCGTTCACCACCTCCTTTGGAGCCAAGCTTGGGGGTTGAGGATGA
TCTCGTCGATGGAAGGAAACGGGGTTGGGGGGTAGATGAGGGAGTTTTCT
ATGTTGGTGATGGTAGGGGTGATTTGTGTCCTGCAATGGTGCTCCGTAAG
GGAGATATGGTTTGTGCAAGGGAGAAGTTTCCATTGGCCGAGGAACTAAA
GCGTTCACCACCTCCTTTGGAGCCAAGCTTGGGGGTTGAG
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