mRNA_M-pyrifera_M_contig75557.17822.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75557.17822.1
Unique NamemRNA_M-pyrifera_M_contig75557.17822.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig75557.17822.1 vs. uniprot
Match: A0A0S8E1U3_9BACT (GEVED domain-containing protein n=1 Tax=Phycisphaerae bacterium SG8_4 TaxID=1703409 RepID=A0A0S8E1U3_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 1.500e-7
Identity = 36/95 (37.89%), Postives = 51/95 (53.68%), Query Frame = 1
Query:   22 GTRRFVFSPNY--------SDRVKVDVCTTNFDTVLAVVDSCNSL----GCIASNDDGCNYDASYVVVNVVAGRDYLICVGGWSTSTGNFRLNIA 270
            G    ++SPN         + R  + +C + FDT+LAV D C         IA NDD C+   S V ++VVAGR YLI VGG+ + TG   L+++
Sbjct:  212 GQGHCMYSPNIWYCYTAACTGRATISLCGSGFDTMLAVYDGCQCNPGQDDMIACNDDACDRQ-SEVTIDVVAGRQYLIEVGGYGSDTGQGVLSVS 305          
BLAST of mRNA_M-pyrifera_M_contig75557.17822.1 vs. uniprot
Match: A0A532UNE4_9BACT (GEVED domain-containing protein n=1 Tax=Planctomycetes bacterium B3_Pla TaxID=2012488 RepID=A0A532UNE4_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 3.820e-7
Identity = 34/97 (35.05%), Postives = 53/97 (54.64%), Query Frame = 1
Query:   13 TSSGTRRFVFSPNY--------SDRVKVDVCTTNFDTVLAVVDSC----NSLGCIASNDDGCNYDASYVVVNVVAGRDYLICVGGWSTSTGNFRLNI 267
            T  G+   + SPN         +    + +C ++FDT+LAV + C         IA NDD C++  S + ++VVAG DYLI +GG+++ TG   L+I
Sbjct:  184 TFDGSGHCMSSPNIWYCYTAPCTGEATISLCGSSFDTILAVYEGCVCYPKQDDLIACNDDACDFQ-SELTIDVVAGEDYLIEIGGYASETGKGVLSI 279          
BLAST of mRNA_M-pyrifera_M_contig75557.17822.1 vs. uniprot
Match: A0A532UQG8_9BACT (GEVED domain-containing protein n=1 Tax=Planctomycetes bacterium B3_Pla TaxID=2012488 RepID=A0A532UQG8_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 2.520e-6
Identity = 33/96 (34.38%), Postives = 51/96 (53.12%), Query Frame = 1
Query:    4 GLYTSSGTRRFVFSPNYSDRVKVDVCTTNFDTVLAVVDSCNSLGCIASNDD--GCNYDASY-----VVVNVVAGRDYLICVGGWSTSTGNFRLNIA 270
            GL  +S    + ++ + +  + V +  ++FDT+LAV D C   GC  + DD   CN D+ Y     +    +AGR YLI +GG+   TG   LNI+
Sbjct:  330 GLCMTSPNIWYCYTASCTGDITVSLAGSSFDTMLAVYDGC---GCYLTEDDLIECNDDSGYDTTSEITFTAIAGRRYLIEIGGYDIETGRGVLNIS 422          
BLAST of mRNA_M-pyrifera_M_contig75557.17822.1 vs. uniprot
Match: A0A532UMA0_9BACT (GEVED domain-containing protein n=1 Tax=Planctomycetes bacterium B3_Pla TaxID=2012488 RepID=A0A532UMA0_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 8.790e-6
Identity = 33/93 (35.48%), Postives = 49/93 (52.69%), Query Frame = 1
Query:    4 GLYTSSGTRRFVFSPNYSDRVKVDVCTTNFDTVLAVVDSC----NSLGCIASNDDGCNYDASYVVVNVVAGRDYLICVGGWSTSTGNFRLNIA 270
            GL  +S    + ++   +  V V +  + +DT+LAV + C    NS   IA NDD      S +    +AGR YLI +GG+S+ TG   LNI+
Sbjct:   58 GLCMTSPNLWYCYTAPCTGDVTVSLRGSGYDTMLAVYNGCQCYPNSADLIACNDDAPGSFQSEITFAAIAGRQYLIEIGGYSSETGRGILNIS 150          
BLAST of mRNA_M-pyrifera_M_contig75557.17822.1 vs. uniprot
Match: UPI00198B8B0D (Uncharacterized protein n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=UPI00198B8B0D)

HSP 1 Score: 51.6 bits (122), Expect = 1.580e-5
Identity = 32/82 (39.02%), Postives = 45/82 (54.88%), Query Frame = 1
Query:   34 FVFSPNYSDRVKVDVCTTNFDTVLAV-VDSCNSL-----GCIASNDDGCNYDASYVVVNVVAGRDYLICVGGWSTSTGNFRL 261
            F ++ + +DRV+V +C + FDTVLAV   SC +L     GC   N   C    S V  + +AG  Y I VGG  ++TG+  L
Sbjct:  346 FTYTADCTDRVRVSLCDSTFDTVLAVYAGSCGALDLVAGGCNDDNGPACPGSRSSVEFDGLAGTSYTIRVGGVGSATGSGTL 427          
BLAST of mRNA_M-pyrifera_M_contig75557.17822.1 vs. uniprot
Match: A0A1G3AMY5_9BACT (GEVED domain-containing protein n=1 Tax=Planctomycetes bacterium RBG_19FT_COMBO_48_8 TaxID=1801972 RepID=A0A1G3AMY5_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 1.610e-5
Identity = 33/98 (33.67%), Postives = 49/98 (50.00%), Query Frame = 1
Query:   13 TSSGTRRFVFSPNY--------SDRVKVDVCTTNFDTVLAVVDSCNSL----GCIASNDDGCNYDASYVVVNVVAGRDYLICVGGWSTSTGNFRLNIA 270
            T  G  + ++SPN         + +V +    ++FDT+LAV   CN        I  NDD      S +V+N VAG  YLI VGG++  TG   L+++
Sbjct:   38 TLDGPYKCMYSPNIWYCYTASCTGKVNISTVGSSFDTMLAVYQGCNCTTAWQNLIECNDDTNAAGQSKIVINAVAGSQYLIEVGGYALETGQGVLSVS 135          
BLAST of mRNA_M-pyrifera_M_contig75557.17822.1 vs. uniprot
Match: A0A532UN08_9BACT (GEVED domain-containing protein n=1 Tax=Planctomycetes bacterium B3_Pla TaxID=2012488 RepID=A0A532UN08_9BACT)

HSP 1 Score: 50.8 bits (120), Expect = 3.030e-5
Identity = 34/93 (36.56%), Postives = 50/93 (53.76%), Query Frame = 1
Query:    4 GLYTSSGTRRFVFSPNYSDRVKVDVCTTNFDTVLAVVDSCN----SLGCIASNDDGCNYDASYVVVNVVAGRDYLICVGGWSTSTGNFRLNIA 270
            GL  +S    + ++ + +  V V +  + +DT+LAV + C     S   IA NDD  N   S V    +AGR YLI VGG+S+ TG   L+I+
Sbjct:  208 GLCMTSPNIWYCYTASCTGDVTVSLLGSGYDTMLAVYNGCGCFPTSADMIACNDDFGNGFQSQVTFAAIAGRRYLIEVGGYSSETGQGVLSIS 300          
BLAST of mRNA_M-pyrifera_M_contig75557.17822.1 vs. uniprot
Match: A0A1G2YTG1_9BACT (GEVED domain-containing protein n=1 Tax=Planctomycetes bacterium RBG_13_50_24 TaxID=1801962 RepID=A0A1G2YTG1_9BACT)

HSP 1 Score: 50.8 bits (120), Expect = 3.100e-5
Identity = 29/83 (34.94%), Postives = 45/83 (54.22%), Query Frame = 1
Query:   34 FVFSPNYSDRVKVDVCTTNFDTVLAVVDSCN----SLGCIASNDDGCNYDASYVVVNVVAGRDYLICVGGWSTSTGNFRLNIA 270
            + ++ + +    V +  +++DT+LAV D C     S   I  NDD  N   S +V + VAG  YLI VGG+S+ TG   L ++
Sbjct:  361 YCYTASCTGEATVSLAGSSYDTMLAVYDGCECYPTSSDMIECNDDAGNSYQSEIVFDAVAGNQYLIEVGGYSSETGQGLLTVS 443          
BLAST of mRNA_M-pyrifera_M_contig75557.17822.1 vs. uniprot
Match: A0A1G2YXI8_9BACT (GEVED domain-containing protein n=1 Tax=Planctomycetes bacterium RBG_13_50_24 TaxID=1801962 RepID=A0A1G2YXI8_9BACT)

HSP 1 Score: 50.4 bits (119), Expect = 4.230e-5
Identity = 32/92 (34.78%), Postives = 46/92 (50.00%), Query Frame = 1
Query:    4 GLYTSSGTRRFVFSPNYSDRVKVDVCTTNFDTVLAVVDSCN----SLGCIASNDDGCNYDASYVVVNVVAGRDYLICVGGWSTSTGNFRLNI 267
            GL  +S    + ++   + +  V +  +NFDT+LAV D C     S   I  NDD      S V  N +AG+ YLI VGG+ T  G   ++I
Sbjct:  452 GLCMTSPNIWYCYTATCTGQATVSLAGSNFDTMLAVYDGCECDPTSNDLIECNDDAGGDYQSAVTFNAIAGKQYLIEVGGYGTEKGAGLISI 543          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75557.17822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A0S8E1U3_9BACT1.500e-737.89GEVED domain-containing protein n=1 Tax=Phycisphae... [more]
A0A532UNE4_9BACT3.820e-735.05GEVED domain-containing protein n=1 Tax=Planctomyc... [more]
A0A532UQG8_9BACT2.520e-634.38GEVED domain-containing protein n=1 Tax=Planctomyc... [more]
A0A532UMA0_9BACT8.790e-635.48GEVED domain-containing protein n=1 Tax=Planctomyc... [more]
UPI00198B8B0D1.580e-539.02Uncharacterized protein n=1 Tax=Pyrinomonadaceae b... [more]
A0A1G3AMY5_9BACT1.610e-533.67GEVED domain-containing protein n=1 Tax=Planctomyc... [more]
A0A532UN08_9BACT3.030e-536.56GEVED domain-containing protein n=1 Tax=Planctomyc... [more]
A0A1G2YTG1_9BACT3.100e-534.94GEVED domain-containing protein n=1 Tax=Planctomyc... [more]
A0A1G2YXI8_9BACT4.230e-534.78GEVED domain-containing protein n=1 Tax=Planctomyc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75557contigM-pyrifera_M_contig75557:228..506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size279
Cds size279
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816653.3217838-CDS-M-pyrifera_M_contig75557:227..5061622816653.3217838-CDS-M-pyrifera_M_contig75557:227..506Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75557 228..506 +
1692278100.3607821-CDS-M-pyrifera_M_contig75557:227..5061692278100.3607821-CDS-M-pyrifera_M_contig75557:227..506Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75557 228..506 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75557.17822.1prot_M-pyrifera_M_contig75557.17822.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75557 228..506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75557.17822.1

>prot_M-pyrifera_M_contig75557.17822.1 ID=prot_M-pyrifera_M_contig75557.17822.1|Name=mRNA_M-pyrifera_M_contig75557.17822.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp
CGLYTSSGTRRFVFSPNYSDRVKVDVCTTNFDTVLAVVDSCNSLGCIASN
DDGCNYDASYVVVNVVAGRDYLICVGGWSTSTGNFRLNIASY*
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mRNA from alignment at M-pyrifera_M_contig75557:228..506+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75557.17822.1 ID=mRNA_M-pyrifera_M_contig75557.17822.1|Name=mRNA_M-pyrifera_M_contig75557.17822.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=279bp|location=Sequence derived from alignment at M-pyrifera_M_contig75557:228..506+ (Macrocystis pyrifera P11B4 male)
TGTGGCCTCTACACAAGCTCTGGCACCCGCAGGTTTGTGTTCTCCCCCAA CTACAGCGACCGTGTCAAGGTCGACGTGTGCACAACCAACTTCGACACCG TTCTTGCTGTTGTGGACAGCTGTAACTCGCTGGGGTGCATTGCGAGCAAC GATGATGGCTGTAATTACGATGCTAGCTACGTCGTCGTGAATGTGGTTGC CGGCAGAGACTACCTCATCTGCGTCGGCGGCTGGAGCACCAGCACAGGCA ATTTCCGCCTGAACATTGCCTCCTACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75557:228..506+

>mRNA_M-pyrifera_M_contig75557.17822.1 ID=mRNA_M-pyrifera_M_contig75557.17822.1|Name=mRNA_M-pyrifera_M_contig75557.17822.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig75557:228..506+ (Macrocystis pyrifera P11B4 male)
TGTGGCCTCTACACAAGCTCTGGCACCCGCAGGTTTGTGTTCTCCCCCAA
CTACAGCGACCGTGTCAAGGTCGACGTGTGCACAACCAACTTCGACACCG
TTCTTGCTGTTGTGGACAGCTGTAACTCGCTGGGGTGCATTGCGAGCAAC
GATGATGGCTGTAATTACGATGCTAGCTACGTCGTCGTGAATGTGGTTGC
CGGCAGAGACTACCTCATCTGCGTCGGCGGCTGGAGCACCAGCACAGGCA
ATTTCCGCCTGAACATTGCCTCCTACTGATGTGGCCTCTACACAAGCTCT
GGCACCCGCAGGTTTGTGTTCTCCCCCAACTACAGCGACCGTGTCAAGGT
CGACGTGTGCACAACCAACTTCGACACCGTTCTTGCTGTTGTGGACAGCT
GTAACTCGCTGGGGTGCATTGCGAGCAACGATGATGGCTGTAATTACGAT
GCTAGCTACGTCGTCGTGAATGTGGTTGCCGGCAGAGACTACCTCATCTG
CGTCGGCGGCTGGAGCACCAGCACAGGCAATTTCCGCCTGAACATTGCCT
CCTACTGA
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