mRNA_M-pyrifera_M_contig75367.17788.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75367.17788.1
Unique NamemRNA_M-pyrifera_M_contig75367.17788.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig75367.17788.1 vs. uniprot
Match: A0D7P8_PARTE (Uncharacterized protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0D7P8_PARTE)

HSP 1 Score: 60.8 bits (146), Expect = 3.500e-9
Identity = 30/68 (44.12%), Postives = 38/68 (55.88%), Query Frame = 1 
Query:    1 VHEIAEMESQLRSEVGPQFGFDLADVYRHFAHRLAVRDALPALSAGVLVPLQARHRYGDHHHVLTYAR 204
            +  IA  +   R EVGPQFGFDL  + +H+ H   +R     L  G +V L A H YG H HVL +AR
Sbjct:  936 ISNIATAQENFRREVGPQFGFDLQQIGKHYVHIRQMRKQHKVLRNGQMVSLSAEHMYGWHTHVLAFAR 1003
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BLAST of mRNA_M-pyrifera_M_contig75367.17788.1 vs. uniprot
Match: A0BEG4_PARTE (Uncharacterized protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0BEG4_PARTE)

HSP 1 Score: 57.0 bits (136), Expect = 7.730e-8
Identity = 28/68 (41.18%), Postives = 36/68 (52.94%), Query Frame = 1 
Query:    1 VHEIAEMESQLRSEVGPQFGFDLADVYRHFAHRLAVRDALPALSAGVLVPLQARHRYGDHHHVLTYAR 204
            +  IA      R EVGPQFGFDL  + +H+ +   +R     L  G +V L A H YG H HVL + R
Sbjct:  381 ISNIATARENFRREVGPQFGFDLQQIGKHYVYIRQIRKQHKVLRNGQIVSLSAEHMYGWHTHVLAFGR 448
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75367.17788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0D7P8_PARTE3.500e-944.12Uncharacterized protein n=1 Tax=Paramecium tetraur... [more]
A0BEG4_PARTE7.730e-841.18Uncharacterized protein n=1 Tax=Paramecium tetraur... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75367contigM-pyrifera_M_contig75367:274..477 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue4.3e-07
Seed eggNOG ortholog5888.CAK79065
KEGG rclassRC00005
KEGG koko:K00703,ko:K07199
KEGG ReactionR02421
KEGG Pathwayko00500,ko01100,ko01110,ko02026,ko04068,ko04152,ko04211,ko04213,ko04371,ko04530,ko04710,ko04714,ko04910,ko04920,ko04921,ko04922,ko04931,ko04932,ko05410,map00500,map01100,map01110,map02026,map04068,map04152,map04211,map04213,map04371,map04530,map04710,map04714,map04910,map04920,map04921,map04922,map04931,map04932,map05410
KEGG ModuleM00565
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515
EggNOG free text desc.Starch synthase catalytic domain
EggNOG OGs3ZBHD@5878,KOG1616@1,KOG1616@2759
EC2.4.1.21
COG Functional cat.S
CAZyGT5
Best tax levelCiliophora
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Exons1
Model size204
Cds size186
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816651.8092384-CDS-M-pyrifera_M_contig75367:273..4591622816651.8092384-CDS-M-pyrifera_M_contig75367:273..459Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75367 274..459 -
1692278099.6214545-CDS-M-pyrifera_M_contig75367:273..4591692278099.6214545-CDS-M-pyrifera_M_contig75367:273..459Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75367 274..459 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816651.8205938-UTR-M-pyrifera_M_contig75367:459..4771622816651.8205938-UTR-M-pyrifera_M_contig75367:459..477Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig75367 460..477 -
1692278099.6368058-UTR-M-pyrifera_M_contig75367:459..4771692278099.6368058-UTR-M-pyrifera_M_contig75367:459..477Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig75367 460..477 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75367.17788.1prot_M-pyrifera_M_contig75367.17788.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75367 274..459 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75367.17788.1

>prot_M-pyrifera_M_contig75367.17788.1 ID=prot_M-pyrifera_M_contig75367.17788.1|Name=mRNA_M-pyrifera_M_contig75367.17788.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=62bp
MESQLRSEVGPQFGFDLADVYRHFAHRLAVRDALPALSAGVLVPLQARHR
YGDHHHVLTYAR
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mRNA from alignment at M-pyrifera_M_contig75367:274..477-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75367.17788.1 ID=mRNA_M-pyrifera_M_contig75367.17788.1|Name=mRNA_M-pyrifera_M_contig75367.17788.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig75367:274..477- (Macrocystis pyrifera P11B4 male)
GTGCATGAGATTGCGGAGATGGAGAGTCAGTTGCGATCTGAGGTTGGTCC
TCAGTTTGGGTTTGACCTCGCTGATGTGTACCGCCACTTTGCACATCGAT
TGGCTGTGCGTGATGCTCTCCCAGCTCTCTCTGCAGGCGTGTTGGTGCCT
CTTCAGGCAAGACACCGCTATGGAGATCACCACCATGTGCTCACCTATGC
CAGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75367:274..477-

>mRNA_M-pyrifera_M_contig75367.17788.1 ID=mRNA_M-pyrifera_M_contig75367.17788.1|Name=mRNA_M-pyrifera_M_contig75367.17788.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig75367:274..477- (Macrocystis pyrifera P11B4 male)
ATGGAGAGTCAGTTGCGATCTGAGGTTGGTCCTCAGTTTGGGTTTGACCT
CGCTGATGTGTACCGCCACTTTGCACATCGATTGGCTGTGCGTGATGCTC
TCCCAGCTCTCTCTGCAGGCGTGTTGGTGCCTCTTCAGGCAAGACACCGC
TATGGAGATCACCACCATGTGCTCACCTATGCCAGAATGGAGAGTCAGTT
GCGATCTGAGGTTGGTCCTCAGTTTGGGTTTGACCTCGCTGATGTGTACC
GCCACTTTGCACATCGATTGGCTGTGCGTGATGCTCTCCCAGCTCTCTCT
GCAGGCGTGTTGGTGCCTCTTCAGGCAAGACACCGCTATGGAGATCACCA
CCATGTGCTCACCTATGCCAGA
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