mRNA_M-pyrifera_M_contig74848.17694.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74848.17694.1
Unique NamemRNA_M-pyrifera_M_contig74848.17694.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74848.17694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74848contigM-pyrifera_M_contig74848:747..1010 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.3
Seed ortholog evalue2.5e-16
Seed eggNOG ortholog157072.XP_008863971.1
KEGG koko:K14404
KEGG Pathwayko03015,ko05164,map03015,map05164
Hectar predicted targeting categoryother localisation
GOsGO:0002682,GO:0002684,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005847,GO:0005849,GO:0006139,GO:0006378,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009966,GO:0009987,GO:0010363,GO:0010467,GO:0010468,GO:0010646,GO:0010941,GO:0010942,GO:0016070,GO:0016071,GO:0016787,GO:0016788,GO:0019219,GO:0019222,GO:0023051,GO:0031123,GO:0031124,GO:0031323,GO:0031347,GO:0031349,GO:0031440,GO:0031974,GO:0031981,GO:0032991,GO:0034052,GO:0034641,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045088,GO:0045089,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050684,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1900363,GO:1901360,GO:1901363,GO:1903311,GO:2000031,GO:2001023,GO:2001038
EggNOG free text desc.pre-mRNA cleavage required for polyadenylation
EggNOG OGsCOG5084@1,KOG1040@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_004850.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03021
Exons1
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816646.8200018-CDS-M-pyrifera_M_contig74848:746..10101622816646.8200018-CDS-M-pyrifera_M_contig74848:746..1010Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74848 747..1010 -
1692278096.861351-CDS-M-pyrifera_M_contig74848:746..10101692278096.861351-CDS-M-pyrifera_M_contig74848:746..1010Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74848 747..1010 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74848.17694.1prot_M-pyrifera_M_contig74848.17694.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74848 747..1010 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74848.17694.1

>prot_M-pyrifera_M_contig74848.17694.1 ID=prot_M-pyrifera_M_contig74848.17694.1|Name=mRNA_M-pyrifera_M_contig74848.17694.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=88bp
VCKFWLQGKCRKDTKCEFLHLYELPLMPECRNGRSCGTRDCPFRHTGVDA
SLEPPALCLRFLDGYCPEGDRCGYLHVQLPPHERPLVS
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mRNA from alignment at M-pyrifera_M_contig74848:747..1010-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74848.17694.1 ID=mRNA_M-pyrifera_M_contig74848.17694.1|Name=mRNA_M-pyrifera_M_contig74848.17694.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig74848:747..1010- (Macrocystis pyrifera P11B4 male)
GTATGCAAGTTTTGGTTGCAAGGGAAATGCCGGAAGGATACCAAGTGTGA
ATTCCTCCATTTGTATGAATTACCATTGATGCCAGAATGTCGGAACGGTA
GGAGTTGTGGGACACGAGATTGTCCCTTTCGACACACTGGAGTAGATGCT
AGCTTGGAACCTCCAGCTTTGTGTCTTCGTTTCTTGGATGGATATTGCCC
TGAAGGGGATCGGTGTGGGTATTTGCATGTCCAACTTCCACCGCATGAAC
GCCCATTGGTGTCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74848:747..1010-

>mRNA_M-pyrifera_M_contig74848.17694.1 ID=mRNA_M-pyrifera_M_contig74848.17694.1|Name=mRNA_M-pyrifera_M_contig74848.17694.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig74848:747..1010- (Macrocystis pyrifera P11B4 male)
GTATGCAAGTTTTGGTTGCAAGGGAAATGCCGGAAGGATACCAAGTGTGA
ATTCCTCCATTTGTATGAATTACCATTGATGCCAGAATGTCGGAACGGTA
GGAGTTGTGGGACACGAGATTGTCCCTTTCGACACACTGGAGTAGATGCT
AGCTTGGAACCTCCAGCTTTGTGTCTTCGTTTCTTGGATGGATATTGCCC
TGAAGGGGATCGGTGTGGGTATTTGCATGTCCAACTTCCACCGCATGAAC
GCCCATTGGTGTCAGTATGCAAGTTTTGGTTGCAAGGGAAATGCCGGAAG
GATACCAAGTGTGAATTCCTCCATTTGTATGAATTACCATTGATGCCAGA
ATGTCGGAACGGTAGGAGTTGTGGGACACGAGATTGTCCCTTTCGACACA
CTGGAGTAGATGCTAGCTTGGAACCTCCAGCTTTGTGTCTTCGTTTCTTG
GATGGATATTGCCCTGAAGGGGATCGGTGTGGGTATTTGCATGTCCAACT
TCCACCGCATGAACGCCCATTGGTGTCA
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